Me1 (malic enzyme 1) - Rat Genome Database

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Gene: Me1 (malic enzyme 1) Rattus norvegicus
Analyze
Symbol: Me1
Name: malic enzyme 1
RGD ID: 3074
Description: Enables NADP binding activity and malate dehydrogenase (decarboxylating) (NADP+) activity. Involved in response to hormone. Located in cytosol and mitochondrion. Orthologous to human ME1 (malic enzyme 1); PARTICIPATES IN Leigh disease pathway; primary hyperoxaluria type 2 pathway; pyruvate decarboxylase deficiency pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytosolic malic enzyme 1; malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+); Malic enzyme 1 soluble; malic enzyme 1, NADP(+)-dependent, cytosolic; Malic enzyme 1, soluble; MOD1; NADP-dependent malic enzyme; NADP-ME
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,429,057 - 96,540,244 (-)NCBIGRCr8
mRatBN7.2887,549,043 - 87,660,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl887,549,043 - 87,660,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx893,229,577 - 93,340,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0891,428,778 - 91,540,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0889,270,059 - 89,381,778 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0894,256,830 - 94,368,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl894,256,839 - 94,368,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,769,078 - 93,863,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,839,845 - 91,955,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,860,614 - 91,975,372 (-)NCBI
Celera887,151,761 - 87,246,579 (-)NCBICelera
RH 3.4 Map8999.69RGD
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Me1RatCOVID-19  ISOME1 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Me1RatRight Ventricular Hypertrophy  IEP 151361111mRNA:increased expression:right ventricleRGD 
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Original Reference(s)
Me1Ratimmunodeficiency 23  ISOME1 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 23ClinVarPMID:17548465 more ...
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Original Reference(s)
Me1Ratacute promyelocytic leukemia  ISOME1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:32929351
Me1RatChemical and Drug Induced Liver Injury  ISOME1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25231249
Me1Rathepatocellular carcinoma  ISOME1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21147110
Me1Ratobesity  ISOME1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19270708
Me1RatWeight Gain  ISOME1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19030233

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Original Reference(s)
Me1Rat(1->4)-beta-D-glucan multiple interactionsISOMe1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ME1 mRNACTDPMID:36331819
Me1Rat(E)-cinnamyl alcohol increases expressionISOME1 (Homo sapiens)6480464cinnamyl alcohol results in increased expression of ME1 mRNACTDPMID:20566472
Me1Rat(S)-nicotine multiple interactionsISOMe1 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Me1Rat1,1-dichloroethene decreases expressionISOMe1 (Mus musculus)6480464vinylidene chloride results in decreased expression of ME1 mRNACTDPMID:26682919
Me1Rat1,2-dichloroethane decreases expressionISOMe1 (Mus musculus)6480464ethylene dichloride results in decreased expression of ME1 mRNACTDPMID:28189721 and PMID:28960355
Me1Rat1,2-dimethylhydrazine multiple interactionsISOMe1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ME1 mRNACTDPMID:22206623
Me1Rat1,4-phenylenediamine increases expressionISOME1 (Homo sapiens)64804644-phenylenediamine results in increased expression of ME1 mRNACTDPMID:16314067
Me1Rat1-chloro-2,4-dinitrobenzene increases expressionISOME1 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of ME1 mRNACTDPMID:20566472
Me1Rat1-chloro-2,4-dinitrobenzene affects bindingISOME1 (Homo sapiens)6480464Dinitrochlorobenzene binds to ME1 proteinCTDPMID:32991956
Me1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOMe1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Me1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOMe1 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Me1Rat17alpha-ethynylestradiol affects expressionISOME1 (Homo sapiens)6480464Ethinyl Estradiol affects the expression of ME1 mRNACTDPMID:20170705 and PMID:26865667
Me1Rat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of ME1 mRNACTDPMID:20170705 and PMID:26865667
Me1Rat17beta-estradiol multiple interactionsISOME1 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of ME1 mRNACTDPMID:19619570
Me1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ME1 mRNACTDPMID:32145629
Me1Rat17beta-estradiol decreases expressionISOMe1 (Mus musculus)6480464Estradiol results in decreased expression of ME1 mRNACTDPMID:19484750 and PMID:39298647
Me1Rat17beta-estradiol increases expressionISOME1 (Homo sapiens)6480464Estradiol results in increased expression of ME1 mRNACTDPMID:19619570
Me1Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOME1 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of ME1 mRNACTDPMID:16631469
Me1Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:31826744
Me1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOME1 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of ME1 mRNACTDPMID:19619570

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Biological Process
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Original Reference(s)
Me1Ratmalate metabolic process involved_inISOME1 (Homo sapiens)1624291 PMID:7622060 and PMID:8187880RGDPMID:7622060 and PMID:8187880
Me1Ratmalate metabolic process involved_inIBAFB:FBgn0002719 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Me1Ratmalate metabolic process involved_inISSUniProtKB:P481638553596PMID:7622060UniProt 
Me1Ratmalate metabolic process involved_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratmalate metabolic process involved_inISSUniProtKB:P481638554832PMID:8187880UniProt 
Me1RatNADH metabolic process involved_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1RatNADH metabolic process involved_inISOME1 (Homo sapiens)1624291 PMID:34547241RGDPMID:34547241
Me1RatNADP metabolic process involved_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1RatNADP metabolic process involved_inISOME1 (Homo sapiens)1624291 PMID:34547241RGDPMID:34547241
Me1Ratprotein homotetramerization involved_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratprotein homotetramerization involved_inISOME1 (Homo sapiens)1624291 PMID:7757881RGDPMID:7757881
Me1Ratprotein homotetramerization involved_inISSUniProtKB:P481631600115GO_REF:0000024UniProtGO_REF:0000024
Me1Ratregulation of NADP metabolic process involved_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratregulation of NADP metabolic process involved_inISOME1 (Homo sapiens)1624291 PMID:23334421RGDPMID:23334421
Me1Ratresponse to hormone involved_inIDA 8554490PMID:2416344UniProt 
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Cellular Component

  
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Original Reference(s)
Me1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Me1Ratcytoplasm located_inIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Me1Ratcytoplasm located_inISOME1 (Homo sapiens)1624291 PMID:34547241RGDPMID:34547241
Me1Ratcytosol located_inIDA 8554490PMID:2416344UniProt 
Me1Ratmitochondrion part_ofIDA 10047338PMID:9681477CACAO 
Me1Ratmitochondrion is_active_inIBAMGI:1916679 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
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Original Reference(s)
Me1Ratidentical protein binding enablesIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratidentical protein binding enablesISOME1 (Homo sapiens)1624291UniProtKB:P48163 more ...RGDPMID:32296183 and PMID:34547241
Me1Ratmagnesium ion binding enablesIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratmagnesium ion binding enablesISOME1 (Homo sapiens)1624291 PMID:7757881RGDPMID:7757881
Me1Ratmagnesium ion binding enablesISSUniProtKB:P481631600115GO_REF:0000024UniProtGO_REF:0000024
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIEAUniProtKB:P06801 and ensembl:ENSMUSP000000349891600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIEARHEA:182531600115GO_REF:0000116RHEAGO_REF:0000116
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIEAEC:1.1.1.401600115GO_REF:0000003UniProtGO_REF:0000003
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesISOMe1 (Mus musculus)1624291 PMID:18802677 and PMID:6838491RGDPMID:18802677 and PMID:6838491
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIBAFB:FBgn0002719 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesISOME1 (Homo sapiens)1624291 PMID:7757881 more ...RGDPMID:7757881 more ...
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIDA 8554490PMID:2416344UniProt 
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesISSUniProtKB:P481638554832PMID:8187880UniProt 
Me1Ratmalate dehydrogenase (decarboxylating) (NADP+) activity enablesIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratmalic enzyme activity  IDA 2317316 RGD 
Me1Ratmalic enzyme activity enablesIEAInterPro:IPR001891 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Me1Ratmalic enzyme activity enablesIEAUniProtKB:P48163 and ensembl:ENSP000003587191600115GO_REF:0000107EnsemblGO_REF:0000107
Me1Ratmalic enzyme activity enablesISSUniProtKB:P481638554832PMID:8187880UniProt 
Me1Ratmalic enzyme activity enablesISSUniProtKB:P481638553596PMID:7622060UniProt 
Me1Ratmalic enzyme activity enablesISOME1 (Homo sapiens)1624291 PMID:23334421 more ...RGDPMID:23334421 more ...
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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Original Reference(s)
Me1Rateicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma  IEA 6907045 KEGGrno:03320
Me1Ratpyruvate metabolic pathway   IEA 6907045 KEGGrno:00620

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#
Reference Title
Reference Citation
1. Tissue-specific regulation of two functional malic enzyme mRNAs by triiodothyronine. Dozin B, etal., Biochemistry. 1985 Sep 24;24(20):5581-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Cloning, sequencing and functional expression of a cDNA encoding a NADP-dependent malic enzyme from human liver. Gonzalez-Manchon C, etal., Gene. 1995 Jul 4;159(2):255-60.
5. Dietary lipoic acid-dependent changes in the activity and mRNA levels of hepatic lipogenic enzymes in rats. Huong DT and Ide T, Br J Nutr. 2008 Jul;100(1):79-87. Epub 2007 Dec 7.
6. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
7. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
8. Characterization of cytosolic malic enzyme in human tumor cells. Loeber G, etal., FEBS Lett. 1994 May 16;344(2-3):181-6.
9. Coding nucleotide sequence of rat liver malic enzyme mRNA. Magnuson MA, etal., J Biol Chem 1986 Jan 25;261(3):1183-6.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Structural characterization of the rat malic enzyme gene. Morioka H, etal., Proc Natl Acad Sci U S A 1989 Jul;86(13):4912-6.
12. Effect of cold acclimation on brown adipose tissue fatty acid synthesis in rats adapted to a high-protein, carbohydrate-free diet. Moura MA, etal., Metabolism. 2001 Dec;50(12):1493-8.
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Cardiac glutaminolysis: a maladaptive cancer metabolism pathway in the right ventricle in pulmonary hypertension. Piao L, etal., J Mol Med (Berl). 2013 Oct;91(10):1185-97. doi: 10.1007/s00109-013-1064-7. Epub 2013 Jun 21.
15. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
16. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
17. GOA pipeline RGD automated data pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Kinetics of induction by thyroid hormone of the two hepatic mRNAs coding for cytosolic malic enzyme in the hypothyroid and euthyroid states. Evidence against an obligatory role of S14 protein in malic enzyme gene expression. Strait KA, etal., J Biol Chem 1989 Nov 25;264(33):19784-9.
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PMID:2699453   PMID:3211151   PMID:4385090   PMID:6838491   PMID:7667285   PMID:18614015   PMID:18755687   PMID:18802677   PMID:19293334   PMID:22871113   PMID:23334421  



Me1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,429,057 - 96,540,244 (-)NCBIGRCr8
mRatBN7.2887,549,043 - 87,660,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl887,549,043 - 87,660,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx893,229,577 - 93,340,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0891,428,778 - 91,540,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0889,270,059 - 89,381,778 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0894,256,830 - 94,368,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl894,256,839 - 94,368,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,769,078 - 93,863,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,839,845 - 91,955,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,860,614 - 91,975,372 (-)NCBI
Celera887,151,761 - 87,246,579 (-)NCBICelera
RH 3.4 Map8999.69RGD
Cytogenetic Map8q31NCBI
ME1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38683,210,402 - 83,431,051 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl683,210,402 - 83,431,051 (-)EnsemblGRCh38hg38GRCh38
GRCh37683,920,121 - 84,140,770 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,976,827 - 84,197,498 (-)NCBINCBI36Build 36hg18NCBI36
Build 34683,977,975 - 84,197,499NCBI
Celera684,353,414 - 84,574,177 (-)NCBICelera
Cytogenetic Map6q14.2NCBI
HuRef681,148,328 - 81,370,879 (-)NCBIHuRef
CHM1_1684,017,801 - 84,238,482 (-)NCBICHM1_1
T2T-CHM13v2.0684,433,644 - 84,654,257 (-)NCBIT2T-CHM13v2.0
Me1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39986,463,416 - 86,577,967 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl986,463,424 - 86,578,006 (-)EnsemblGRCm39 Ensembl
GRCm38986,581,363 - 86,695,914 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl986,581,371 - 86,695,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv37986,474,970 - 86,589,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36987,524,432 - 87,639,643 (-)NCBIMGSCv36mm8
MGSCv36986,378,094 - 86,492,941 (-)NCBIMGSCv36mm8
Celera983,658,088 - 83,772,920 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.58NCBI
Me1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541110,938,944 - 11,065,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541110,938,580 - 11,084,171 (-)NCBIChiLan1.0ChiLan1.0
ME1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25103,312,102 - 103,524,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16101,204,935 - 101,421,593 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0681,107,569 - 81,320,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1684,382,732 - 84,595,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,382,732 - 84,595,701 (-)Ensemblpanpan1.1panPan2
ME1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11243,623,413 - 43,793,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1243,624,945 - 43,828,775 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1243,436,816 - 43,632,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01244,390,732 - 44,586,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1244,390,736 - 44,586,656 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11243,730,159 - 43,925,658 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01243,679,098 - 43,858,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01243,840,059 - 44,036,221 (-)NCBIUU_Cfam_GSD_1.0
Me1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,899,805 - 79,044,563 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365107,426,347 - 7,571,553 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365107,425,983 - 7,571,090 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ME1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,799,684 - 82,991,085 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,799,878 - 82,989,895 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2193,051,393 - 93,241,425 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1p12NCBI
ME1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,889,211 - 8,112,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,887,984 - 8,112,533 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040184,102,580 - 184,333,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Me1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479911,166,398 - 11,382,662 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Me1
896 total Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 91937838 91937839 T G snv SS/JrHsdMcwi (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:127
Interacting mature miRNAs:150
Transcripts:ENSRNOT00000013244
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat

1 to 10 of 42 rows
RH129138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,549,163 - 87,549,352 (+)MAPPERmRatBN7.2
Rnor_6.0894,256,960 - 94,257,148NCBIRnor6.0
Rnor_5.0893,769,199 - 93,769,387UniSTSRnor5.0
RGSC_v3.4891,839,966 - 91,840,154UniSTSRGSC3.4
Celera887,151,882 - 87,152,070UniSTS
Cytogenetic Map8q31UniSTS
AU048158  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,639,285 - 87,639,421 (+)MAPPERmRatBN7.2
Rnor_6.0894,347,354 - 94,347,489NCBIRnor6.0
Rnor_5.0893,858,715 - 93,858,850UniSTSRnor5.0
Celera887,241,607 - 87,241,743UniSTS
Cytogenetic Map8q31UniSTS
ME1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,614,953 - 87,615,108 (+)MAPPERmRatBN7.2
Rnor_6.0894,322,488 - 94,322,642NCBIRnor6.0
Rnor_5.0893,834,727 - 93,834,881UniSTSRnor5.0
RGSC_v3.4891,905,747 - 91,905,901UniSTSRGSC3.4
Celera887,217,631 - 87,217,785UniSTS
Cytogenetic Map8q31UniSTS
RH130391  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,550,091 - 87,550,287 (+)MAPPERmRatBN7.2
Rnor_6.0894,257,888 - 94,258,083NCBIRnor6.0
Rnor_5.0893,770,127 - 93,770,322UniSTSRnor5.0
RGSC_v3.4891,840,894 - 91,841,089UniSTSRGSC3.4
Celera887,152,810 - 87,153,005UniSTS
RH 3.4 Map8998.59UniSTS
Cytogenetic Map8q31UniSTS
RH94870  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8896,430,278 - 96,430,541 (+)Marker Load Pipeline
mRatBN7.2887,550,264 - 87,550,527 (+)MAPPERmRatBN7.2
Rnor_6.0894,258,061 - 94,258,323NCBIRnor6.0
Rnor_5.0893,770,300 - 93,770,562UniSTSRnor5.0
RGSC_v3.4891,841,067 - 91,841,329UniSTSRGSC3.4
Celera887,152,983 - 87,153,245UniSTS
RH 3.4 Map8999.69UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000013244   ⟹   ENSRNOP00000013244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl887,549,048 - 87,660,304 (-)Ensembl
Rnor_6.0 Ensembl894,256,839 - 94,352,246 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078977   ⟹   ENSRNOP00000071968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl887,549,043 - 87,659,923 (-)Ensembl
Rnor_6.0 Ensembl894,258,198 - 94,368,834 (-)Ensembl
RefSeq Acc Id: NM_012600   ⟹   NP_036732
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,429,057 - 96,540,244 (-)NCBI
mRatBN7.2887,549,043 - 87,660,251 (-)NCBI
Rnor_6.0894,256,839 - 94,368,834 (-)NCBI
Rnor_5.0893,769,078 - 93,863,611 (-)NCBI
RGSC_v3.4891,839,845 - 91,955,917 (-)RGD
Celera887,151,761 - 87,246,579 (-)RGD
Sequence:
Protein RefSeqs NP_036732 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41563 (Get FASTA)   NCBI Sequence Viewer  
  AAA41564 (Get FASTA)   NCBI Sequence Viewer  
  EDL77625 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013244
GenBank Protein P13697 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036732   ⟸   NM_012600
- UniProtKB: P13697 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013244   ⟸   ENSRNOT00000013244
Ensembl Acc Id: ENSRNOP00000071968   ⟸   ENSRNOT00000078977
Name Modeler Protein Id AA Range Protein Structure
AF-P13697-F1-model_v2 AlphaFold P13697 1-572 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696161
Promoter ID:EPDNEW_R6686
Type:initiation region
Name:Me1_1
Description:malic enzyme 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,368,867 - 94,368,927EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29639 BioCyc
Ensembl Genes ENSRNOG00000009715 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000013244 ENTREZGENE
Gene3D-CATH 3.40.50.10380 UniProtKB/Swiss-Prot
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro Aminiacid_DH-like_N_sf UniProtKB/Swiss-Prot
  Malic_enzyme_CS UniProtKB/Swiss-Prot
  Malic_N_dom UniProtKB/Swiss-Prot
  Malic_N_dom_sf UniProtKB/Swiss-Prot
  Malic_NAD-bd UniProtKB/Swiss-Prot
  Malic_OxRdtase UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 24552 ENTREZGENE
PANTHER MALIC ENZYME-RELATED UniProtKB/Swiss-Prot
  NADP-DEPENDENT MALIC ENZYME UniProtKB/Swiss-Prot
Pfam malic UniProtKB/Swiss-Prot
  Malic_M UniProtKB/Swiss-Prot
PhenoGen Me1 PhenoGen
PIRSF PIRSF000106 UniProtKB/Swiss-Prot
PRINTS MALOXRDTASE UniProtKB/Swiss-Prot
PROSITE MALIC_ENZYMES UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009715 RatGTEx
SMART malic UniProtKB/Swiss-Prot
  Malic_M UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot
  SSF53223 UniProtKB/Swiss-Prot
TIGR TC217846
UniProt A0A0G2K1S6_RAT UniProtKB/TrEMBL
  A6I1V2_RAT UniProtKB/TrEMBL
  F1LQQ1_RAT UniProtKB/TrEMBL
  MAOX_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-14 Me1  malic enzyme 1  Me1  malic enzyme 1, NADP(+)-dependent, cytosolic  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Me1  malic enzyme 1, NADP(+)-dependent, cytosolic  Me1  malic enzyme 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Me1  malic enzyme 1    Malic enzyme 1, soluble  Name updated 625702 APPROVED
2002-06-10 Me1  Malic enzyme 1, soluble      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_homology putative NADP-binding site is similar to the fatty acid synthetase enoyl reductase NADP-binding domain 633307