Dnajb9 (DnaJ heat shock protein family (Hsp40) member B9) - Rat Genome Database

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Gene: Dnajb9 (DnaJ heat shock protein family (Hsp40) member B9) Rattus norvegicus
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Symbol: Dnajb9
Name: DnaJ heat shock protein family (Hsp40) member B9
RGD ID: 3070
Description: Predicted to enable Hsp70 protein binding activity and misfolded protein binding activity. Predicted to be involved in several processes, including ERAD pathway; negative regulation of IRE1-mediated unfolded protein response; and positive regulation of immunoglobulin production. Located in cytoplasm and nucleolus. Orthologous to human DNAJB9 (DnaJ heat shock protein family (Hsp40) member B9); INTERACTS WITH (+)-schisandrin B; 1,4-dithiothreitol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog subfamily B member 9; DnaJ (Hsp40) homolog, subfamily B, member 9; dnaJ homolog subfamily B member 9; dnaJ homolog, subfamily b, member 9; endoplasmic reticulum DNA J domain-containing protein 4; ER-resident protein ERdj4; ERdj4; mdg-1; Mdg1; Microvascular endothelial differentiation gene 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8666,997,842 - 67,007,371 (-)NCBIGRCr8
mRatBN7.2661,270,385 - 61,276,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,269,913 - 61,275,063 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx661,606,994 - 61,611,192 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0661,921,985 - 61,926,183 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0661,394,475 - 61,398,675 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0664,165,913 - 64,170,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl664,165,913 - 64,170,151 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0673,754,560 - 73,770,497 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,583,033 - 63,587,247 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1663,586,159 - 63,590,373 (-)NCBI
Celera660,267,249 - 60,271,433 (-)NCBICelera
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb9Ratpleomorphic xanthoastrocytoma  ISODNAJB9 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb9RatChemical and Drug Induced Liver Injury  ISODNAJB9 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26881866
Dnajb9Ratcholestasis  ISODNAJB9 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26881866

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb9Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of DNAJB9 mRNA]CTDPMID:31150632
Dnajb9Rat(-)-epigallocatechin 3-gallate increases expressionISODNAJB9 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of DNAJB9 mRNACTDPMID:16084531
Dnajb9Rat(S)-nicotine multiple interactionsISODnajb9 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Dnajb9Rat1,2-dimethylhydrazine multiple interactionsISODnajb9 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of DNAJB9 mRNACTDPMID:22206623
Dnajb9Rat1,2-dimethylhydrazine decreases expressionISODnajb9 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of DNAJB9 mRNACTDPMID:22206623
Dnajb9Rat1,4-dithiothreitol increases expressionEXP 6480464Dithiothreitol results in increased expression of DNAJB9 mRNACTDPMID:23123503
Dnajb9Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine increases expressionISODnajb9 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Dnajb9Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISODnajb9 (Mus musculus)6480464[Caffeine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Dnajb9Rat1-naphthyl isothiocyanate multiple interactionsISODNAJB9 (Homo sapiens)6480464[1-Naphthylisothiocyanate co-treated with Cholic Acids] affects the expression of DNAJB9 mRNACTDPMID:27344345
Dnajb9Rat17beta-estradiol increases expressionISODNAJB9 (Homo sapiens)6480464Estradiol results in increased expression of DNAJB9 mRNACTDPMID:20106945
Dnajb9Rat17beta-estradiol increases expressionISODnajb9 (Mus musculus)6480464Estradiol results in increased expression of DNAJB9 mRNACTDPMID:39298647
Dnajb9Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of DNAJB9 mRNACTDPMID:32145629
Dnajb9Rat17beta-estradiol multiple interactionsISODNAJB9 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of DNAJB9 mRNACTDPMID:30165855
Dnajb9Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISODNAJB9 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of DNAJB9 mRNACTDPMID:29581250
Dnajb9Rat1H-pyrazole increases expressionISODnajb9 (Mus musculus)6480464pyrazole results in increased expression of DNAJB9 mRNACTDPMID:17945193
Dnajb9Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISODNAJB9 (Homo sapiens)64804642 more ...CTDPMID:19095052
Dnajb9Rat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISODnajb9 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
Dnajb9Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISODnajb9 (Mus musculus)64804642 more ...CTDPMID:30294300
Dnajb9Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:27291303
Dnajb9Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODnajb9 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with EGF protein] inhibits the reaction [[Dexamethasone co-treated with rosiglitazone co-treated with 1-Methyl-3-isobutylxanthine co-treated with INS1 protein] results in increased expression of DNAJB9 mRNA] more ...CTDPMID:16054899

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Biological Process
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb9Ratcytoplasm located_inIDA 1300442PMID:11525638UniProt 
Dnajb9Ratendoplasmic reticulum located_inISODNAJB9 (Homo sapiens)1624291 PMID:21231916RGDGO_REF:0000054 and PMID:21231916
Dnajb9Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Dnajb9Ratendoplasmic reticulum is_active_inIBAMGI:1351618 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb9Ratendoplasmic reticulum located_inISSUniProtKB:Q9QYI61600115GO_REF:0000024UniProtGO_REF:0000024
Dnajb9Ratendoplasmic reticulum located_inISODnajb9 (Mus musculus)1624291 PMID:11836248RGDPMID:11836248
Dnajb9Ratendoplasmic reticulum lumen located_inISSUniProtKB:Q9QYI61600115GO_REF:0000024UniProtGO_REF:0000024
Dnajb9Ratendoplasmic reticulum lumen located_inIEAUniProtKB-SubCell:SL-00961600115GO_REF:0000044UniProtGO_REF:0000044
Dnajb9Ratendoplasmic reticulum lumen located_inISODnajb9 (Mus musculus)1624291 PMID:22267725RGDPMID:22267725
Dnajb9Ratnucleolus located_inIDA 1300442PMID:11525638UniProt 
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Molecular Function

  


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#
Reference Title
Reference Citation
1. High levels of the molecular chaperone Mdg1/ERdj4 reflect the activation state of endothelial cells. Berger BJ, etal., Exp Cell Res 2003 Oct 15;290(1):82-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Upregulation of the cochaperone Mdg1 in endothelial cells is induced by stress and during in vitro angiogenesis. Prols F, etal., Exp Cell Res 2001 Sep 10;269(1):42-53.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
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PMID:11836248   PMID:15489334   PMID:18400946   PMID:19199708   PMID:21231916   PMID:22267725   PMID:25222125  



Dnajb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8666,997,842 - 67,007,371 (-)NCBIGRCr8
mRatBN7.2661,270,385 - 61,276,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,269,913 - 61,275,063 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx661,606,994 - 61,611,192 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0661,921,985 - 61,926,183 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0661,394,475 - 61,398,675 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0664,165,913 - 64,170,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl664,165,913 - 64,170,151 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0673,754,560 - 73,770,497 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,583,033 - 63,587,247 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1663,586,159 - 63,590,373 (-)NCBI
Celera660,267,249 - 60,271,433 (-)NCBICelera
Cytogenetic Map6q21NCBI
DNAJB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387108,569,874 - 108,574,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7108,569,867 - 108,574,850 (+)EnsemblGRCh38hg38GRCh38
GRCh377108,210,318 - 108,215,294 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,997,592 - 108,002,530 (+)NCBINCBI36Build 36hg18NCBI36
Build 347107,804,306 - 107,809,245NCBI
Celera7103,023,727 - 103,028,665 (+)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7102,578,406 - 102,583,511 (+)NCBIHuRef
CHM1_17108,143,475 - 108,148,580 (+)NCBICHM1_1
T2T-CHM13v2.07109,894,482 - 109,899,458 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27107,577,403 - 107,582,508 (+)NCBI
Dnajb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,252,680 - 44,256,851 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,252,342 - 44,257,109 (-)EnsemblGRCm39 Ensembl
GRCm381244,205,897 - 44,210,068 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,205,559 - 44,210,326 (-)EnsemblGRCm38mm10GRCm38
MGSCv371245,306,884 - 45,311,055 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361245,076,183 - 45,080,354 (-)NCBIMGSCv36mm8
Celera1245,576,005 - 45,580,176 (-)NCBICelera
Cytogenetic Map12B2NCBI
cM Map1220.71NCBI
Dnajb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,814,479 - 12,822,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,814,993 - 12,820,852 (+)NCBIChiLan1.0ChiLan1.0
DNAJB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26145,419,483 - 145,424,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,689,453 - 193,694,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07100,555,527 - 100,560,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17113,273,844 - 113,279,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7113,274,015 - 113,279,105 (+)Ensemblpanpan1.1panPan2
DNAJB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11448,879,963 - 48,885,616 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1448,879,914 - 48,884,361 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1448,323,737 - 48,329,124 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01448,829,357 - 48,834,752 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1448,829,970 - 48,834,742 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11448,926,451 - 48,931,836 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01448,610,313 - 48,615,689 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01448,983,891 - 48,989,289 (+)NCBIUU_Cfam_GSD_1.0
Dnajb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511868,402,977 - 68,407,460 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366531,554,553 - 1,559,170 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366531,554,534 - 1,558,832 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1836,579,453 - 36,584,130 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11836,578,928 - 36,584,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21840,219,853 - 40,224,716 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12177,477,177 - 77,482,190 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2177,479,112 - 77,482,571 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604226,381,126 - 26,386,050 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473921,187,581 - 21,193,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473921,187,581 - 21,193,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dnajb9
36 total Variants

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:87
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000005363
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

1 to 10 of 23 rows
RH140278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,271,115 - 61,271,332 (+)MAPPERmRatBN7.2
Rnor_6.0664,166,175 - 64,166,391NCBIRnor6.0
Rnor_5.0673,754,822 - 73,755,038UniSTSRnor5.0
RGSC_v3.4663,583,295 - 63,583,511UniSTSRGSC3.4
Celera660,267,511 - 60,267,727UniSTS
RH 3.4 Map6433.3UniSTS
Cytogenetic Map6q16-q23UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000005363   ⟹   ENSRNOP00000005363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,269,913 - 61,275,063 (-)Ensembl
Rnor_6.0 Ensembl664,165,913 - 64,170,151 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093248   ⟹   ENSRNOP00000076154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl664,167,798 - 64,170,122 (-)Ensembl
RefSeq Acc Id: NM_012699   ⟹   NP_036831
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8666,997,842 - 67,002,051 (-)NCBI
mRatBN7.2661,270,854 - 61,275,063 (-)NCBI
Rnor_6.0664,165,913 - 64,170,122 (-)NCBI
Rnor_5.0673,754,560 - 73,770,497 (-)NCBI
RGSC_v3.4663,583,033 - 63,587,247 (-)RGD
Celera660,267,249 - 60,271,433 (-)RGD
Sequence:
RefSeq Acc Id: XM_039111791   ⟹   XP_038967719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8666,997,842 - 67,007,371 (-)NCBI
mRatBN7.2661,270,385 - 61,276,795 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_036831 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967719 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH70915 (Get FASTA)   NCBI Sequence Viewer  
  CAA67434 (Get FASTA)   NCBI Sequence Viewer  
  EDM03348 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005363
  ENSRNOP00000005363.3
  ENSRNOP00000099445
GenBank Protein P97554 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_036831   ⟸   NM_012699
- Peptide Label: precursor
- UniProtKB: P97554 (UniProtKB/Swiss-Prot),   A6HBE3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005363   ⟸   ENSRNOT00000005363
Ensembl Acc Id: ENSRNOP00000076154   ⟸   ENSRNOT00000093248
RefSeq Acc Id: XP_038967719   ⟸   XM_039111791
- Peptide Label: isoform X1
J

Name Modeler Protein Id AA Range Protein Structure
AF-P97554-F1-model_v2 AlphaFold P97554 1-222 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694575
Promoter ID:EPDNEW_R5100
Type:initiation region
Name:Dnajb9_1
Description:DnaJ heat shock protein family member B9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0664,170,122 - 64,170,182EPDNEW


1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37710 BioCyc
Ensembl Genes ENSRNOG00000004006 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005363 ENTREZGENE
  ENSRNOT00000005363.6 UniProtKB/Swiss-Prot
  ENSRNOT00000160259 ENTREZGENE
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7104653 IMAGE-MGC_LOAD
InterPro DnaJ_domain UniProtKB/Swiss-Prot
  DnaJ_domain_CS UniProtKB/Swiss-Prot
  Hsp70_co-chaperone_J-domain UniProtKB/Swiss-Prot
  J_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:24908 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91708 IMAGE-MGC_LOAD
NCBI Gene 24908 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 9 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY B MEMBER 9 UniProtKB/Swiss-Prot
Pfam DnaJ UniProtKB/Swiss-Prot
PhenoGen Dnajb9 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot
PROSITE DNAJ_1 UniProtKB/Swiss-Prot
  DNAJ_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004006 RatGTEx
SMART DnaJ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot
TIGR TC229679
UniProt A6HBE3 ENTREZGENE, UniProtKB/TrEMBL
  DNJB9_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajb9  DnaJ heat shock protein family (Hsp40) member B9  Dnajb9  DnaJ (Hsp40) homolog, subfamily B, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Dnajb9  DnaJ (Hsp40) homolog, subfamily B, member 9    dnaJ homolog, subfamily b, member 9  Name updated 1299863 APPROVED
2002-06-10 Dnajb9  dnaJ homolog, subfamily b, member 9      Name updated 70584 APPROVED

Note Type Note Reference
gene_cellular_localization localizes to the cytoplasm, nucleus and nucleoli 1300442
gene_cellular_localization translocates to the nucleus after stress 1300442
gene_domains contains a J-domain 1300442
gene_function mammalian chaperone 1300443
gene_process protects endoplasmic reticulum stressed cells from apoptosis 1300443
gene_product member of the HSP40 protein family 1300443
gene_regulation upregulated in primary endothelial and mesangial cells by stress 1300442