Itpr3 (inositol 1,4,5-trisphosphate receptor, type 3) - Rat Genome Database

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Gene: Itpr3 (inositol 1,4,5-trisphosphate receptor, type 3) Rattus norvegicus
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Symbol: Itpr3
Name: inositol 1,4,5-trisphosphate receptor, type 3
RGD ID: 2934
Description: Enables several functions, including alcohol binding activity; identical protein binding activity; and inositol 1,4,5-trisphosphate-gated calcium channel activity. Involved in G protein-coupled receptor signaling pathway; cellular response to cAMP; and positive regulation of cytosolic calcium ion concentration. Located in several cellular components, including apical plasma membrane; brush border; and nuclear outer membrane. Is active in endoplasmic reticulum membrane and presynapse. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease and type 1 diabetes mellitus. Orthologous to human ITPR3 (inositol 1,4,5-trisphosphate receptor type 3); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; Alzheimer's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inositol 1, 4, 5-triphosphate receptor 3; inositol 1,4,5-triphosphate receptor 3; inositol 1,4,5-triphosphate receptor, type 3; inositol 1,4,5-trisphosphate receptor type 3; inositol 1,4,5-trisphosphate-gated calcium channel ITPR3; insP3R3; IP3 receptor; IP3R 3; IP3R-3; IP3R3; IP3R3X; type 3 inositol 1,4,5-trisphosphate receptor; type 3 InsP3 receptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,138,553 - 5,204,189 (+)NCBIGRCr8
mRatBN7.2205,136,968 - 5,202,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,136,441 - 5,202,337 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,862,755 - 5,927,561 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,224,499 - 5,289,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,702,534 - 5,768,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,645,894 - 5,711,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,646,097 - 5,711,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,711,508 - 7,775,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,292,430 - 5,357,502 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,292,656 - 5,357,727 (+)NCBI
Celera206,717,488 - 6,781,775 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Itpr3Ratgestational diabetes  ISOITPR3 (Homo sapiens)401901174mRNA:decreased expression:placenta (human)RGD 
Itpr3Ratpre-eclampsia  ISOITPR3 (Homo sapiens)401901174mRNA:decreased expression:placenta (human)RGD 
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Itpr3Ratautosomal dominant intellectual developmental disorder 5  ISOITPR3 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disability and autosomal dominant 5ClinVarPMID:20683986 more ...
Itpr3RatCharcot-Marie-Tooth Disease Type 1J  ISOITPR3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24627108 more ...
Itpr3Ratlong QT syndrome  ISOITPR3 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital long QT syndromeClinVar 
Itpr3Ratproteasome-associated autoinflammatory syndrome 1  ISOITPR3 (Homo sapiens)8554872ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1ClinVarPMID:28492532
Itpr3Rattype 1 diabetes mellitus  ISOITPR3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24627108 more ...
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Itpr3Ratacrodermatitis  ISOITPR3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27258892
Itpr3RatAnimal Disease Models  ISOITPR3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:37047547 and PMID:38679149
Itpr3Ratautism spectrum disorder  ISOITPR3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:37047547 and PMID:38679149
Itpr3Ratautistic disorder  ISOITPR3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:33166615
Itpr3Rattype 1 diabetes mellitus  ISOITPR3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
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Itpr3Ratautism spectrum disorder  ISSItpr3 (Mus musculus)13592920 MouseDO 
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Itpr3RatCharcot-Marie-Tooth Disease Type 1J susceptibilityISOITPR3 (Homo sapiens)7240710 OMIM 
Itpr3Rattype 1 diabetes mellitus susceptibilityISOITPR3 (Homo sapiens)7240710 OMIM 

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Itpr3Rat(1->4)-beta-D-glucan multiple interactionsISOItpr3 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ITPR3 mRNACTDPMID:36331819
Itpr3Rat1,1-dichloroethene increases expressionISOItpr3 (Mus musculus)6480464vinylidene chloride results in increased expression of ITPR3 mRNACTDPMID:26682919
Itpr3Rat17beta-estradiol decreases expressionISOItpr3 (Mus musculus)6480464Estradiol results in decreased expression of ITPR3 mRNACTDPMID:39298647
Itpr3Rat2,3',4,4',5-Pentachlorobiphenyl decreases expressionISOItpr3 (Mus musculus)64804642 more ...CTDPMID:31388691
Itpr3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOItpr3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ITPR3 mRNACTDPMID:21570461
Itpr3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ITPR3 mRNACTDPMID:34747641
Itpr3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOITPR3 (Homo sapiens)64804642 more ...CTDPMID:26705709
Itpr3Rat2,6-dimethoxyphenol multiple interactionsISOITPR3 (Homo sapiens)6480464[pyrogallol 1 more ...CTDPMID:38598786
Itpr3Rat2-butoxyethanol decreases expressionISOItpr3 (Mus musculus)6480464n-butoxyethanol results in decreased expression of ITPR3 mRNACTDPMID:19812364
Itpr3Rat2-palmitoylglycerol increases expressionISOITPR3 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of ITPR3 mRNACTDPMID:37199045
Itpr3Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:23196670
Itpr3Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of ITPR3 proteinCTDPMID:34915118
Itpr3Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOITPR3 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of ITPR3 mRNA more ...CTDPMID:28628672
Itpr3Rat4,4'-sulfonyldiphenol multiple interactionsISOITPR3 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of ITPR3 mRNACTDPMID:28628672
Itpr3Rat4,4'-sulfonyldiphenol affects methylationISOItpr3 (Mus musculus)6480464bisphenol S affects the methylation of ITPR3 geneCTDPMID:31683443
Itpr3Rat4,4'-sulfonyldiphenol decreases expressionISOItpr3 (Mus musculus)6480464bisphenol S results in decreased expression of ITPR3 mRNACTDPMID:39298647
Itpr3Rat4,4'-sulfonyldiphenol increases expressionISOItpr3 (Mus musculus)6480464bisphenol S results in increased expression of ITPR3 mRNACTDPMID:30951980 and PMID:38908815
Itpr3Rat4-hydroxyphenyl retinamide increases expressionISOItpr3 (Mus musculus)6480464Fenretinide results in increased expression of ITPR3 mRNACTDPMID:28973697
Itpr3Rat5-aza-2'-deoxycytidine affects expressionISOITPR3 (Homo sapiens)6480464Decitabine affects the expression of ITPR3 mRNACTDPMID:23300844
Itpr3Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of ITPR3 mRNACTDPMID:31881176

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Biological Process
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Itpr3Ratcalcium ion homeostasis involved_inISOITPR3 (Homo sapiens)1624291 PMID:32949214RGDPMID:32949214
Itpr3Ratcalcium ion homeostasis involved_inISSUniProtKB:Q145731600115GO_REF:0000024UniProtGO_REF:0000024
Itpr3Ratcalcium ion transmembrane transport involved_inIEAUniProtKB-KW:KW-01071600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratcalcium ion transmembrane transport involved_inIEAInterPro:IPR0006991600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratcalcium ion transport involved_inIEAInterPro:IPR000493 and InterPro:IPR0159251600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratcalcium ion transport acts_upstream_of_or_withinISOItpr3 (Mus musculus)1624291 PMID:15890645 and PMID:16014380RGDPMID:15890645 and PMID:16014380
Itpr3Ratcalcium ion transport involved_inIEAUniProtKB-KW:KW-01091600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratcalcium ion transport involved_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr3Ratcalcium-mediated signaling involved_inIEAGO:00052201600115GO_REF:0000108GOCGO_REF:0000108
Itpr3Ratcalcium-mediated signaling involved_inIEAGO:00152781600115GO_REF:0000108GOCGO_REF:0000108
Itpr3Ratcellular response to cAMP  IDA 7242277 RGD 
Itpr3RatG protein-coupled receptor signaling pathway  IDA 619539 RGD 
Itpr3Ratlong-term synaptic potentiation acts_upstream_of_or_withinISOItpr3 (Mus musculus)1624291MGI:1857070 PMID:18417102RGDPMID:18417102
Itpr3Ratmemory acts_upstream_of_or_withinISOItpr3 (Mus musculus)1624291MGI:1857070 PMID:18417102RGDPMID:18417102
Itpr3Ratmonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-04071600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratmonoatomic ion transport involved_inIEAInterPro:IPR0058211600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratplatelet activation involved_inISOITPR3 (Homo sapiens)1624291 PMID:10828023RGDPMID:10828023
Itpr3Ratpositive regulation of cytosolic calcium ion concentration  IDA 7175265 RGD 
Itpr3Ratpositive regulation of cytosolic calcium ion concentration  IDA 619539 RGD 
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Cellular Component
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Itpr3Ratapical part of cell located_inIDA 8553539PMID:8288584BHF-UCL 
Itpr3Ratapical plasma membrane  IDA 329848959MMO:0000662RGD 
Itpr3Ratbrush border located_inIDA 8553539PMID:8288584BHF-UCL 
Itpr3Ratcytoplasm located_inISOItpr3 (Mus musculus)1624291 PMID:16014380RGDPMID:16014380
Itpr3Ratcytoplasmic side of endoplasmic reticulum membrane located_inISOItpr3 (Mus musculus)1624291 PMID:21030605RGDPMID:21030605
Itpr3Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratdendrite  IDA 6482792 RGD 
Itpr3Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratendoplasmic reticulum located_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr3Ratendoplasmic reticulum located_inIDA 7242196PMID:19116207BHF-UCL 
Itpr3Ratendoplasmic reticulum located_inIEAInterPro:IPR0004931600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratendoplasmic reticulum membrane  IDA 7175270 RGD 
Itpr3Ratendoplasmic reticulum membrane located_inIEAARBA:ARBA000286851600115GO_REF:0000117UniProtGO_REF:0000117
Itpr3Ratendoplasmic reticulum membrane located_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr3Ratendoplasmic reticulum membrane is_active_inIDA 13702443PMID:10096607SynGO 
Itpr3Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-00971600115GO_REF:0000044UniProtGO_REF:0000044
Itpr3Ratendoplasmic reticulum membrane is_active_inIBAMGI:96623 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Itpr3Ratendoplasmic reticulum membrane located_inISOITPR3 (Homo sapiens)1624291 PMID:21062895RGDPMID:21062895
Itpr3Ratendoplasmic reticulum membrane located_inTAS 1600115Reactome:R-RNO-182097ReactomeReactome:R-RNO-182097
Itpr3Ratendoplasmic reticulum membrane located_inTAS 1600115Reactome:R-RNO-182052ReactomeReactome:R-RNO-182052
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Molecular Function
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Itpr3RatATP binding enablesISSUniProtKB:Q145731600115GO_REF:0000024UniProtGO_REF:0000024
Itpr3RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3RatATP binding enablesISOITPR3 (Homo sapiens)1624291 PMID:37898605RGDPMID:37898605
Itpr3Ratcalcium channel activity enablesIEAUniProtKB-KW:KW-01071600115GO_REF:0000043UniProtGO_REF:0000043
Itpr3Ratcalcium channel activity enablesIEAInterPro:IPR0006991600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratcalcium ion binding  IDA 7175265 RGD 
Itpr3Ratcalcium ion binding enablesIBAPANTHER:PTN001010185 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Itpr3Ratcalcium ion binding enablesISOITPR3 (Homo sapiens)1624291 PMID:37898605RGDPMID:37898605
Itpr3Ratcalcium ion binding  IDA 7175268 RGD 
Itpr3Ratcalcium ion transmembrane transporter activity  TAS 619539 RGD 
Itpr3Ratidentical protein binding  IPIItpr3 (Rattus norvegicus)2290285homooligomerizationRGD 
Itpr3Ratinositol 1,3,4,5 tetrakisphosphate binding  IDA 729040 RGD 
Itpr3Ratinositol 1,4,5 trisphosphate binding  IDA 7175265 RGD 
Itpr3Ratinositol 1,4,5 trisphosphate binding enablesIEAInterPro:IPR0004931600115GO_REF:0000002InterProGO_REF:0000002
Itpr3Ratinositol 1,4,5 trisphosphate binding enablesIBAMGI:96623 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Itpr3Ratinositol 1,4,5 trisphosphate binding enablesISOITPR3 (Homo sapiens)1624291 PMID:8288584RGDPMID:8288584
Itpr3Ratinositol 1,4,5 trisphosphate binding enablesIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr3Ratinositol 1,4,5 trisphosphate binding  IDA 7175268 RGD 
Itpr3Ratinositol 1,4,5-trisphosphate-gated calcium channel activity  IDA 7175265 RGD 
Itpr3Ratinositol 1,4,5-trisphosphate-gated calcium channel activity  TAS 619539 RGD 
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RGD Manual Annotations


  
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Itpr3Ratcalcium transport pathway   ISOITPR3 (Homo sapiens)7204693 RGD 
Itpr3Ratcalcium/calcium-mediated signaling pathway   ISOITPR3 (Homo sapiens)7204693 RGD 

Imported Annotations - KEGG (archival)

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Itpr3RatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Itpr3Ratcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020
Itpr3Ratglutamate signaling pathway  IEA 6907045 KEGGrno:04724
Itpr3Ratgonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGrno:04912
Itpr3Ratlong term depression  IEA 6907045 KEGGrno:04730
Itpr3Ratlong term potentiation  IEA 6907045 KEGGrno:04720
Itpr3Ratphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070

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#
Reference Title
Reference Citation
1. Sequence and functional characterization of a third inositol trisphosphate receptor subtype, IP3R-3, expressed in pancreatic islets, kidney, gastrointestinal tract, and other tissues. Blondel O, etal., J Biol Chem 1993 May 25;268(15):11356-63.
2. Protein kinase C decreases the apparent affinity of the inositol 1,4,5-trisphosphate receptor type 3 in RINm5F cells. Caron AZ, etal., Cell Calcium. 2007 Sep;42(3):323-31. Epub 2007 Feb 23.
3. Protein kinase A increases the binding affinity and the Ca2+ release activity of the inositol 1,4,5-trisphosphate receptor type 3 in RINm5F cells. Chaloux B, etal., Biol Cell. 2007 Jul;99(7):379-88.
4. Translational mobility of the type 3 inositol 1,4,5-trisphosphate receptor Ca2+ release channel in endoplasmic reticulum membrane. Ferreri-Jacobia M, etal., J Biol Chem. 2005 Feb 4;280(5):3824-31. Epub 2004 Nov 10.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Regulation of Ca(2+) signaling in rat bile duct epithelia by inositol 1,4,5-trisphosphate receptor isoforms. Hirata K, etal., Hepatology 2002 Aug;36(2):284-96.
8. Proteasomal activation mediates down-regulation of inositol 1,4,5-trisphosphate receptor and calcium mobilization in rat pancreatic islets. Lee B, etal., Endocrinology 2001 May;142(5):1744-51.
9. Characterization of inositol 1,4,5-trisphosphate receptor isoform mRNA expression and regulation in rat pancreatic islets, RINm5F cells and betaHC9 cells. Lee B, etal., J Mol Endocrinol 1998 Aug;21(1):31-9.
10. Single-channel properties in endoplasmic reticulum membrane of recombinant type 3 inositol trisphosphate receptor. Mak DO, etal., J Gen Physiol. 2000 Mar;115(3):241-56.
11. Primary structure, ligand binding, and localization of the human type 3 inositol 1,4,5-trisphosphate receptor expressed in intestinal epithelium. Maranto AR J Biol Chem. 1994 Jan 14;269(2):1222-30.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Selective phosphorylation of the IP3R-I in vivo by cGMP-dependent protein kinase in smooth muscle. Murthy KS and Zhou H, Am J Physiol Gastrointest Liver Physiol 2003 Feb;284(2):G221-30.
14. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
15. Selective recognition of inositol phosphates by subtypes of the inositol trisphosphate receptor. Nerou EP, etal., Biochem J 2001 Apr 1;355(Pt 1):59-69.
16. Inositol 1,4,5 trisphosphate receptor and chromogranin B are concentrated in different regions of the hippocampus. Nicolay NH, etal., J Neurosci Res. 2007 Jul;85(9):2026-36.
17. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
18. Differential distribution, clustering, and lateral diffusion of subtypes of the inositol 1,4,5-trisphosphate receptor. Pantazaka E and Taylor CW, J Biol Chem. 2011 Jul 1;286(26):23378-87. doi: 10.1074/jbc.M111.236372. Epub 2011 May 5.
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. Characterization of ryanodine receptors in rat colonic epithelium. Prinz G and Diener M, Acta Physiol (Oxf). 2008 Jun;193(2):151-62. doi: 10.1111/j.1748-1716.2007.01802.x. Epub 2007 Nov 15.
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PMID:9139693   PMID:10191279   PMID:10828023   PMID:11149946   PMID:11285228   PMID:11875073   PMID:11939501   PMID:12088506   PMID:14681927   PMID:14983008   PMID:14983009   PMID:15175012  
PMID:15184066   PMID:15890645   PMID:16014380   PMID:16107208   PMID:16122796   PMID:16840702   PMID:17257671   PMID:17327232   PMID:17636122   PMID:17916355   PMID:17925404   PMID:18417102  
PMID:18434513   PMID:18535093   PMID:19052258   PMID:19217932   PMID:19348050   PMID:19429061   PMID:19946888   PMID:20463231   PMID:20643058   PMID:20813840   PMID:21030605   PMID:21062895  
PMID:21071436   PMID:21302308   PMID:21700703   PMID:22878752   PMID:23137780   PMID:23382219   PMID:24469450   PMID:25242084   PMID:25482245   PMID:29476059  



Itpr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,138,553 - 5,204,189 (+)NCBIGRCr8
mRatBN7.2205,136,968 - 5,202,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,136,441 - 5,202,337 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,862,755 - 5,927,561 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,224,499 - 5,289,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,702,534 - 5,768,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,645,894 - 5,711,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,646,097 - 5,711,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,711,508 - 7,775,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,292,430 - 5,357,502 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,292,656 - 5,357,727 (+)NCBI
Celera206,717,488 - 6,781,775 (+)NCBICelera
Cytogenetic Map20p12NCBI
ITPR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,621,322 - 33,696,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,620,365 - 33,696,574 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,589,099 - 33,664,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,697,139 - 33,772,329 (+)NCBINCBI36Build 36hg18NCBI36
Build 34633,697,321 - 33,772,317NCBI
Celera635,143,559 - 35,218,741 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef633,330,927 - 33,406,007 (+)NCBIHuRef
CHM1_1633,591,516 - 33,666,641 (+)NCBICHM1_1
T2T-CHM13v2.0633,442,464 - 33,517,747 (+)NCBIT2T-CHM13v2.0
Itpr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,275,976 - 27,341,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,276,278 - 27,341,197 (+)EnsemblGRCm39 Ensembl
GRCm381727,057,002 - 27,122,223 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,057,304 - 27,122,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,194,249 - 27,259,168 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,785,125 - 26,849,812 (+)NCBIMGSCv36mm8
Celera1727,593,736 - 27,658,505 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.68NCBI
Itpr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,055,805 - 2,106,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,055,782 - 2,106,709 (+)NCBIChiLan1.0ChiLan1.0
ITPR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2548,100,235 - 48,175,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,967,322 - 44,042,624 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0633,194,531 - 33,269,788 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,303,454 - 34,378,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,303,454 - 34,378,215 (+)Ensemblpanpan1.1panPan2
ITPR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,970,613 - 3,050,254 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,805,187 - 3,048,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,997,254 - 3,066,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,313,122 - 3,382,514 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,313,138 - 3,381,269 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,980,128 - 3,049,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,061,183 - 3,130,533 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,159,323 - 3,228,541 (+)NCBIUU_Cfam_GSD_1.0
Itpr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,254,932 - 25,318,491 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,254,937 - 25,318,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,835,922 - 29,901,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,835,922 - 29,901,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,443,858 - 34,509,094 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,381,862 - 38,456,505 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,381,743 - 38,456,499 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,459,448 - 33,535,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,229,281 - 23,281,621 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,228,690 - 23,281,552 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Itpr3
944 total Variants

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:56
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000011516
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat

1 to 10 of 24 rows
RH129560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,202,073 - 5,202,262 (+)MAPPERmRatBN7.2
Rnor_6.0205,711,437 - 5,711,625NCBIRnor6.0
Rnor_5.0207,775,092 - 7,775,280UniSTSRnor5.0
RGSC_v3.4205,357,237 - 5,357,425UniSTSRGSC3.4
Celera206,781,510 - 6,781,698UniSTS
RH 3.4 Map2056.24UniSTS
Cytogenetic Map20p12UniSTS
RH129567  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,201,999 - 5,202,211 (+)MAPPERmRatBN7.2
Rnor_6.0205,711,363 - 5,711,574NCBIRnor6.0
Rnor_5.0207,775,018 - 7,775,229UniSTSRnor5.0
RGSC_v3.4205,357,163 - 5,357,374UniSTSRGSC3.4
Celera206,781,436 - 6,781,647UniSTS
RH 3.4 Map2056.24UniSTS
Cytogenetic Map20p12UniSTS
PMC275467P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,201,193 - 5,201,672 (+)MAPPERmRatBN7.2
Rnor_6.0205,710,557 - 5,711,035NCBIRnor6.0
Rnor_5.0207,774,212 - 7,774,690UniSTSRnor5.0
RGSC_v3.4205,356,357 - 5,356,835UniSTSRGSC3.4
Celera206,780,630 - 6,781,108UniSTS
Cytogenetic Map20p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000090925   ⟹   ENSRNOP00000075066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl205,136,441 - 5,202,337 (+)Ensembl
Rnor_6.0 Ensembl205,646,097 - 5,711,702 (+)Ensembl
RefSeq Acc Id: NM_013138   ⟹   NP_037270
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,138,812 - 5,204,184 (+)NCBI
mRatBN7.2205,136,968 - 5,202,339 (+)NCBI
Rnor_6.0205,646,097 - 5,711,702 (+)NCBI
Rnor_5.0207,711,508 - 7,775,357 (+)NCBI
RGSC_v3.4205,292,430 - 5,357,502 (+)RGD
Celera206,717,488 - 6,781,775 (+)RGD
Sequence:
RefSeq Acc Id: XM_063278985   ⟹   XP_063135055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,138,553 - 5,204,189 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_037270 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135055 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41446 (Get FASTA)   NCBI Sequence Viewer  
  ACT21452 (Get FASTA)   NCBI Sequence Viewer  
  EDL96876 (Get FASTA)   NCBI Sequence Viewer  
  EDL96877 (Get FASTA)   NCBI Sequence Viewer  
  EDL96878 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075066
GenBank Protein Q63269 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_037270   ⟸   NM_013138
- UniProtKB: Q63269 (UniProtKB/Swiss-Prot),   C7E1V1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075066   ⟸   ENSRNOT00000090925
RefSeq Acc Id: XP_063135055   ⟸   XM_063278985
- Peptide Label: isoform X1
- UniProtKB: Q63269 (UniProtKB/Swiss-Prot),   C7E1V1 (UniProtKB/TrEMBL)
MIR

Name Modeler Protein Id AA Range Protein Structure
AF-Q63269-F1-model_v2 AlphaFold Q63269 1-2670 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 37 of 37 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4496 BioCyc
Ensembl Genes ENSRNOG00000052795 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090925 ENTREZGENE
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  2.80.10.50 UniProtKB/Swiss-Prot
  IP3 receptor type 1 binding core, RIH domain UniProtKB/Swiss-Prot
InterPro Ins145_P3_rcpt UniProtKB/Swiss-Prot
  InsP3_rcpt UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot
  MIR_dom_sf UniProtKB/Swiss-Prot
  MIR_motif UniProtKB/Swiss-Prot
  RIH_assoc-dom UniProtKB/Swiss-Prot
  RIH_dom UniProtKB/Swiss-Prot
  Ryanodine_IP3_receptor UniProtKB/Swiss-Prot
  RyR/IP3R_RIH_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:25679 UniProtKB/Swiss-Prot
NCBI Gene 25679 ENTREZGENE
PANTHER INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR TYPE 3 UniProtKB/Swiss-Prot
  MIR DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam Ins145_P3_rec UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot
  MIR UniProtKB/Swiss-Prot
  RIH_assoc UniProtKB/Swiss-Prot
  RYDR_ITPR UniProtKB/Swiss-Prot
PhenoGen Itpr3 PhenoGen
PRINTS INSP3RECEPTR UniProtKB/Swiss-Prot
PROSITE MIR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000052795 RatGTEx
SMART MIR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100909 UniProtKB/Swiss-Prot
  SSF82109 UniProtKB/Swiss-Prot
TIGR TC218650
UniProt A0A0G2K9N6_RAT UniProtKB/TrEMBL
  A6JJL0_RAT UniProtKB/TrEMBL
  A6JJL2_RAT UniProtKB/TrEMBL
  C7E1V1 ENTREZGENE, UniProtKB/TrEMBL
  ITPR3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 37 of 37 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Itpr3  inositol 1,4,5-trisphosphate receptor, type 3  Itpr3  inositol 1,4,5-triphosphate receptor, type 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-17 Itpr3  inositol 1,4,5-triphosphate receptor, type 3  Itpr3  inositol 1,4,5-triphosphate receptor 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Itpr3  inositol 1, 4, 5-triphosphate receptor 3      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_cellular_localization localized to the endoplasmic reticulum 729040
gene_function ligand activated calcium ion selective channel 68695
gene_function ligand activated calcium ion selective channel 69501
gene_physical_interaction binds inositol 1,3,4,5-tetrakisphosphate and inositol hexakisphosphate 729040
gene_process responsible for initiating and propagating cytosolic Ca++ signals evoked by receptors linked to IP3 formation 68695