Itpr1 (inositol 1,4,5-trisphosphate receptor, type 1) - Rat Genome Database

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Gene: Itpr1 (inositol 1,4,5-trisphosphate receptor, type 1) Rattus norvegicus
Analyze
Symbol: Itpr1
Name: inositol 1,4,5-trisphosphate receptor, type 1
RGD ID: 2933
Description: Enables several functions, including anion binding activity; inositol 1,4,5-trisphosphate-gated calcium channel activity; and transmembrane transporter binding activity. Involved in several processes, including calcium ion transmembrane transport; cellular response to cAMP; and regulation of apoptotic process. Located in several cellular components, including endoplasmic reticulum; neuronal cell body; and synaptic membrane. Part of protein-containing complex. Is active in several cellular components, including GABA-ergic synapse; postsynapse; and smooth endoplasmic reticulum membrane. Used to study asthma. Biomarker of Huntington's disease; cardiac arrest; and transient cerebral ischemia. Human ortholog(s) of this gene implicated in Gillespie syndrome; spinocerebellar ataxia type 15; and spinocerebellar ataxia type 29. Orthologous to human ITPR1 (inositol 1,4,5-trisphosphate receptor type 1); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: I145TR; inositol 1,4,5-triphosphate receptor 1; inositol 1,4,5-triphosphate receptor type 1; inositol 1,4,5-triphosphate receptor, type 1; inositol 1,4,5-trisphosphate receptor type 1; inositol 1,4,5-trisphosphate-gated calcium channel ITPR1; inositol 145-triphosphate receptor type 1; InsP3R; InsP3R1; IP-3-R; IP3 receptor; IP3R 1; IP3R1; P400; type 1 inositol 1,4,5-trisphosphate receptor; type 1 InsP3 receptor
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bp116
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84142,743,401 - 143,066,505 (+)NCBIGRCr8
mRatBN7.24141,187,377 - 141,554,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4141,187,418 - 141,510,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4146,609,417 - 146,932,882 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04142,390,143 - 142,713,600 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04141,034,101 - 141,357,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04140,247,297 - 140,580,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4140,247,313 - 140,580,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04204,714,729 - 205,047,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44143,705,360 - 144,030,051NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4129,839,611 - 130,162,657 (+)NCBICelera
RH 3.4 Map4 RGD
Cytogenetic Map4q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
Itpr1RatAlzheimer's disease  ISOITPR1 (Homo sapiens)6482821protein:decreased expression:temporal cortex and frontal cortex (human)RGD 
Itpr1Ratasthma  IDA 5147661 RGD 
Itpr1RatAtaxia  ISOItpr1 (Mus musculus)6482816 RGD 
Itpr1RatBrain Hypoxia  ISOItpr1 (Mus musculus)6482794mRNA and protein:increased expression:cerebellum (mouse)RGD 
Itpr1Ratcardiac arrest  IEP 6480675protein:increased expression:cerebellum (rat)RGD 
Itpr1Ratdiabetes mellitus susceptibilityISOItpr1 (Mus musculus)6480678DNA:deletion:exon:p.Q1715_R1731del (mouse)RGD 
Itpr1Ratdilated cardiomyopathy no_associationISOITPR1 (Homo sapiens)1556475 RGD 
Itpr1Ratepilepsy  ISOItpr1 (Mus musculus)6482816 RGD 
Itpr1Ratgestational diabetes  ISOITPR1 (Homo sapiens)401901174mRNA:decreased expression:placenta (human)RGD 
Itpr1RatHuntington's disease  ISOItpr1 (Mus musculus)6480875 RGD 
Itpr1RatHuntington's disease  IEP 6483009protein:decreased expression:neostriatum (rat)RGD 
Itpr1RatHuntington's disease  ISOItpr1 (Mus musculus)6480685protein:decreased activity:cerebellum and striatum (mouse)RGD 
Itpr1RatHyperalgesia  IEP 13793383 RGD 
Itpr1RatHypoxia  IEP 13793382mRNA:decreased expression:hippocampusRGD 
Itpr1Ratnephrotoxicity treatmentIEP 329853759 RGD 
Itpr1Ratneurodegenerative disease onsetISOItpr1 (Mus musculus)6480870mRNA:decreased expression:cerebellum (mouse)RGD 
Itpr1RatNiemann-Pick disease type A disease_progressionISOItpr1 (Mus musculus)6482797protein:decreased expression:cerebellum (mouse)RGD 
Itpr1Ratpre-eclampsia  ISOITPR1 (Homo sapiens)401901174mRNA:decreased expression:placenta (human)RGD 
Itpr1Ratspinocerebellar ataxia type 15  ISOITPR1 (Homo sapiens)6480871DNA:deletions:exons more ...RGD 
Itpr1Ratspinocerebellar ataxia type 15  ISOITPR1 (Homo sapiens)6480683DNA:deletions:multiple (human)RGD 
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Original Reference(s)
Itpr1Ratanterior segment dysgenesis  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Anterior segment dysgenesisClinVarPMID:25741868 more ...
Itpr1Ratautosomal dominant cerebellar ataxia  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal dominant cerebellar ataxiaClinVarPMID:19423733 more ...
Itpr1Ratcerebellar ataxia  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Cerebellar ataxiaClinVar 
Itpr1RatCongenital Mydriasis  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Bilateral congenital mydriasisClinVarPMID:25741868
Itpr1Ratgenetic disease  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10664581 more ...
Itpr1RatGillespie syndrome  ISOITPR1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10664581 more ...
Itpr1Ratintellectual disability  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:21367767 more ...
Itpr1Ratmovement disease  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Movement disorderClinVarPMID:25741868
Itpr1Ratmucosulfatidosis  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple sulfatase deficiencyClinVarPMID:28492532
Itpr1Ratmultiple sclerosis  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple sclerosisClinVarPMID:25741868 more ...
Itpr1RatNeurodevelopmental Disorders  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:10664581 more ...
Itpr1Ratspastic ataxia  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic ataxiaClinVarPMID:25741868 more ...
Itpr1Ratspinocerebellar ataxia type 15  ISOITPR1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10664581 more ...
Itpr1Ratspinocerebellar ataxia type 29  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spinocerebellar ataxia type 29ClinVarPMID:10664581 more ...
Itpr1RatSpinocerebellar Ataxias  ISOITPR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Spinocerebellar Ataxia and DominantClinVarPMID:20437544 more ...
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Original Reference(s)
Itpr1RatBrain Hypoxia  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17285299
Itpr1RatChemical and Drug Induced Liver Injury  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25226513
Itpr1RatGillespie syndrome  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Itpr1RatNeurodevelopmental Disorders  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28191889
Itpr1RatProstatic Neoplasms  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17199135
Itpr1Ratspinocerebellar ataxia type 15  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22986007
Itpr1Ratspinocerebellar ataxia type 29  ISOITPR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22986007
Object Symbol
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Original Reference(s)
Itpr1RatGillespie syndrome  ISOITPR1 (Homo sapiens)7240710 OMIM 
Itpr1Ratspinocerebellar ataxia type 15  ISOITPR1 (Homo sapiens)7240710 OMIM 
Itpr1Ratspinocerebellar ataxia type 29  ISOITPR1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Itpr1Rat(-)-demecolcine increases expressionISOITPR1 (Homo sapiens)6480464Demecolcine results in increased expression of ITPR1 mRNACTDPMID:23649840
Itpr1Rat(1->4)-beta-D-glucan multiple interactionsISOItpr1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ITPR1 mRNACTDPMID:36331819
Itpr1Rat(E)-thiamethoxam decreases expressionISOItpr1 (Mus musculus)6480464Thiamethoxam results in decreased expression of ITPR1 mRNACTDPMID:33533595
Itpr1Rat1,2-dimethylhydrazine decreases expressionISOItpr1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ITPR1 mRNACTDPMID:22206623
Itpr1Rat1,2-dimethylhydrazine multiple interactionsISOItpr1 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in decreased expression of ITPR1 mRNA]CTDPMID:22206623
Itpr1Rat17alpha-ethynylestradiol affects expressionISOItpr1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of ITPR1 mRNACTDPMID:17555576
Itpr1Rat17alpha-ethynylestradiol multiple interactionsISOItpr1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ITPR1 mRNACTDPMID:17942748
Itpr1Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of ITPR1 mRNACTDPMID:17557909
Itpr1Rat17beta-estradiol multiple interactionsISOITPR1 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in decreased expression of ITPR1 mRNA more ...CTDPMID:19426747 more ...
Itpr1Rat17beta-estradiol increases expressionISOITPR1 (Homo sapiens)6480464Estradiol results in increased expression of ITPR1 mRNACTDPMID:31614463
Itpr1Rat17beta-estradiol decreases expressionISOItpr1 (Mus musculus)6480464Estradiol results in decreased expression of ITPR1 mRNACTDPMID:39298647
Itpr1Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of ITPR1 mRNACTDPMID:26496021
Itpr1Rat17beta-estradiol affects expressionISOITPR1 (Homo sapiens)6480464Estradiol affects the expression of ITPR1 mRNACTDPMID:22574217
Itpr1Rat17beta-estradiol decreases expressionISOITPR1 (Homo sapiens)6480464Estradiol results in decreased expression of ITPR1 mRNACTDPMID:19167446 more ...
Itpr1Rat1D-myo-inositol 1,4,5-trisphosphate multiple interactionsISOITPR1 (Homo sapiens)6480464Inositol 1 more ...CTDPMID:33408296
Itpr1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOItpr1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Itpr1Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOItpr1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Itpr1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOITPR1 (Homo sapiens)6480464[Tetrachlorodibenzodioxin co-treated with 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide] results in decreased expression of ITPR1 mRNA more ...CTDPMID:11007951 more ...
Itpr1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ITPR1 mRNACTDPMID:34747641
Itpr1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOItpr1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of ITPR1 mRNACTDPMID:33956508

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Biological Process
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Original Reference(s)
Itpr1Ratapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratcalcium import into the mitochondrion involved_inIMP 405650386PMID:17178908UniProt 
Itpr1Ratcalcium ion transmembrane transport involved_inIEAInterPro:IPR0006991600115GO_REF:0000002InterProGO_REF:0000002
Itpr1Ratcalcium ion transmembrane transport involved_inIEAUniProtKB-KW:KW-01071600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratcalcium ion transport involved_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr1Ratcalcium ion transport acts_upstream_of_or_withinIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratcalcium ion transport involved_inIEAUniProtKB-KW:KW-01091600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratcalcium ion transport acts_upstream_of_or_withinISOItpr1 (Mus musculus)1624291 PMID:16014380RGDPMID:16014380
Itpr1Ratcalcium ion transport involved_inIEAInterPro:IPR000493 and InterPro:IPR0159251600115GO_REF:0000002InterProGO_REF:0000002
Itpr1Ratcalcium-mediated signaling involved_inIEAGO:00152781600115GO_REF:0000108GOCGO_REF:0000108
Itpr1Ratcalcium-mediated signaling involved_inIEAGO:00052201600115GO_REF:0000108GOCGO_REF:0000108
Itpr1Ratcell morphogenesis involved_inIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratcell morphogenesis involved_inISOItpr1 (Mus musculus)1624291 PMID:32675284RGDPMID:32675284
Itpr1Ratcellular response to cAMP  IDA 7242277 RGD 
Itpr1Ratcellular response to hypoxia  IEP 6482794 RGD 
Itpr1Ratdendrite development  IEP 13793388 RGD 
Itpr1Ratendoplasmic reticulum calcium ion homeostasis acts_upstream_of_or_withinISOItpr1 (Mus musculus)1624291MGI:1097161 more ...RGDPMID:15613488
Itpr1Ratendoplasmic reticulum calcium ion homeostasis acts_upstream_of_or_withinIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratepithelial fluid transport involved_inIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratepithelial fluid transport involved_inISOItpr1 (Mus musculus)1624291 PMID:23542070RGDPMID:23542070
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Cellular Component
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Original Reference(s)
Itpr1Ratcalcineurin complex part_ofIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratcalcineurin complex part_ofISOItpr1 (Mus musculus)1624291 PMID:12617961RGDPMID:12617961
Itpr1Ratcytoplasm located_inISOItpr1 (Mus musculus)1624291 PMID:9858485RGDPMID:9858485
Itpr1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratcytoplasm located_inIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratdendrite  IDA 6482792 RGD 
Itpr1Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratendoplasmic reticulum located_inIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratendoplasmic reticulum located_inIEAInterPro:IPR0004931600115GO_REF:0000002InterProGO_REF:0000002
Itpr1Ratendoplasmic reticulum located_inISOItpr1 (Mus musculus)1624291 PMID:24374158 and PMID:25368151RGDPMID:24374158 and PMID:25368151
Itpr1Ratendoplasmic reticulum located_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr1Ratendoplasmic reticulum membrane  IDA 1582340 RGD 
Itpr1Ratendoplasmic reticulum membrane located_inIEAUniProtKB:Q14643 and ensembl:ENSP000004976051600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratendoplasmic reticulum membrane located_inISOItpr1 (Mus musculus)1624291 PMID:15613488 and PMID:28416699RGDPMID:15613488 and PMID:28416699
Itpr1Ratendoplasmic reticulum membrane located_inIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-00971600115GO_REF:0000044UniProtGO_REF:0000044
Itpr1Ratendoplasmic reticulum membrane located_inIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr1Ratendoplasmic reticulum membrane located_inIEAARBA:ARBA000286851600115GO_REF:0000117UniProtGO_REF:0000117
Itpr1Ratendoplasmic reticulum membrane is_active_inIBAMGI:96623 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
Itpr1RatATP binding enablesIDA 405650379PMID:36376291UniProt 
Itpr1Ratcalcium channel activity enablesIEAInterPro:IPR0006991600115GO_REF:0000002InterProGO_REF:0000002
Itpr1Ratcalcium channel activity enablesIEAUniProtKB-KW:KW-01071600115GO_REF:0000043UniProtGO_REF:0000043
Itpr1Ratcalcium channel inhibitor activity enablesIEAUniProtKB:Q14643 and ensembl:ENSP000004976051600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratcalcium channel inhibitor activity enablesISOITPR1 (Homo sapiens)1624291 PMID:16793548RGDPMID:16793548
Itpr1Ratcalcium ion binding enablesIBAPANTHER:PTN001010185 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Itpr1Ratidentical protein binding  IPIItpr1 (Rattus norvegicus)13793385homotetramerizationRGD 
Itpr1Ratidentical protein binding enablesIPIUniProtKB:P29994-113432250PMID:26458101IntAct 
Itpr1Ratidentical protein binding enablesIPIUniProtKB:P29994-113432241PMID:21827954IntAct 
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesISSUniProtKB:P118811600115GO_REF:0000024UniProtGO_REF:0000024
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesIEAInterPro:IPR0004931600115GO_REF:0000002InterProGO_REF:0000002
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesIDA 405650379PMID:36376291UniProt 
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesIBAMGI:96623 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesISOItpr1 (Mus musculus)1624291 PMID:12442173 more ...RGDPMID:12442173 more ...
Itpr1Ratinositol 1,4,5 trisphosphate binding enablesIEAUniRule:UR0015277691600115GO_REF:0000104UniProtGO_REF:0000104
Itpr1Ratinositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels enablesIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
Itpr1Ratinositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels enablesISOItpr1 (Mus musculus)1624291 PMID:11117745RGDPMID:11117745
Itpr1Ratinositol 1,4,5-trisphosphate-gated calcium channel activity  IDA 6480876 RGD 
Itpr1Ratinositol 1,4,5-trisphosphate-gated calcium channel activity enablesIEAUniProtKB:P11881 and ensembl:ENSMUSP000000321921600115GO_REF:0000107EnsemblGO_REF:0000107
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RGD Manual Annotations


  
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Original Reference(s)
Itpr1Ratcalcium transport pathway   ISOITPR1 (Homo sapiens)7204693 RGD 
Itpr1Ratcalcium/calcium-mediated signaling pathway   ISOITPR1 (Homo sapiens)7204693 RGD 

Imported Annotations - SMPDB

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Original Reference(s)
Itpr1Ratacebutolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00296
Itpr1Ratadrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway   ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00296
Itpr1Ratamiodarone pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00665
Itpr1Ratamlodipine pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00376
Itpr1Ratatenolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00298
Itpr1Ratbetaxolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00299
Itpr1Ratbisoprolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00300
Itpr1Ratbupranolol drug pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00670
Itpr1Ratbupranolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00670
Itpr1Ratcarvedilol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00367
Itpr1Ratdiltiazem pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00359
Itpr1Ratdisopyramide pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00325
Itpr1Ratdobutamine pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00662
Itpr1Ratesmolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00301
Itpr1Ratflecainde pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00331
Itpr1Ratfosphenytoin pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00326
Itpr1Ratibutilide pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00332
Itpr1Ratisoprenaline pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00663
Itpr1Ratisradipine pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00378
Itpr1Ratlevobunolol pharmacodynamics pathway  ISOITPR1 (Homo sapiens)10402751 SMPDBSMP:00666
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Imported Annotations - KEGG (archival)

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Source
Original Reference(s)
Itpr1RatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Itpr1Ratcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020
Itpr1Ratglutamate signaling pathway  IEA 6907045 KEGGrno:04724
Itpr1Ratgonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGrno:04912
Itpr1RatHuntington's disease pathway   IEA 6907045 KEGGrno:05016
Itpr1Ratlong term depression  IEA 6907045 KEGGrno:04730
Itpr1Ratlong term potentiation  IEA 6907045 KEGGrno:04720
Itpr1Ratphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070

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Reference Title
Reference Citation
1. Involvement of the p97-Ufd1-Npl4 complex in the regulated endoplasmic reticulum-associated degradation of inositol 1,4,5-trisphosphate receptors. Alzayady KJ, etal., J Biol Chem. 2005 Oct 14;280(41):34530-7. Epub 2005 Aug 15.
2. Fragmented inositol 1,4,5-trisphosphate receptors retain tetrameric architecture and form functional Ca2+ release channels. Alzayady KJ, etal., J Biol Chem. 2013 Apr 19;288(16):11122-34. doi: 10.1074/jbc.M113.453241. Epub 2013 Mar 11.
3. The homocysteine-inducible endoplasmic reticulum (ER) stress protein Herp counteracts mutant alpha-synuclein-induced ER stress via the homeostatic regulation of ER-resident calcium release channel proteins. Belal C, etal., Hum Mol Genet. 2012 Mar 1;21(5):963-77. doi: 10.1093/hmg/ddr502. Epub 2011 Nov 1.
4. Enhanced hypoxic preconditioning by isoflurane: signaling gene expression and requirement of intracellular Ca2+ and inositol triphosphate receptors. Bickler PE and Fahlman CS, Brain Res. 2010 Jun 22;1340:86-95. Epub 2010 Apr 29.
5. Nuclear inositol 1,4,5-trisphosphate receptors regulate local Ca2+ transients and modulate cAMP response element binding protein phosphorylation. Cardenas C, etal., J Cell Sci. 2005 Jul 15;118(Pt 14):3131-40.
6. Deranged calcium signaling and neurodegeneration in spinocerebellar ataxia type 3. Chen X, etal., J Neurosci. 2008 Nov 26;28(48):12713-24.
7. Ins(1,4,5)P3 receptor type 1 associates with AKAP9 (AKAP450 variant) and protein kinase A type IIbeta in the Golgi apparatus in cerebellar granule cells. Collado-Hilly M and Coquil JF, Biol Cell. 2009 Jun 4;101(8):469-80. doi: 10.1042/BC20080184.
8. Inositol 1,4,5-trisphosphate receptors: distinct neuronal and nonneuronal forms derived by alternative splicing differ in phosphorylation. Danoff SK, etal., Proc Natl Acad Sci U S A 1991 Apr 1;88(7):2951-5.
9. Two Italian families with ITPR1 gene deletion presenting a broader phenotype of SCA15. Di Gregorio E, etal., Cerebellum. 2010 Mar;9(1):115-23.
10. Domoic acid enhances Bcl-2-calcineurin-inositol-1,4,5-trisphosphate receptor interactions and delayed neuronal death in rat brain slices. Erin N and Billingsley ML, Brain Res. 2004 Jul 16;1014(1-2):45-52.
11. Conformational motions and ligand-binding underlying gating and regulation in IP3R channel. Fan G, etal., Nat Commun. 2022 Nov 14;13(1):6942. doi: 10.1038/s41467-022-34574-1.
12. Gating machinery of InsP3R channels revealed by electron cryomicroscopy. Fan G, etal., Nature. 2015 Nov 19;527(7578):336-41. doi: 10.1038/nature15249. Epub 2015 Oct 12.
13. Subunit oligomerization, and topology of the inositol 1,4, 5-trisphosphate receptor. Galvan DL, etal., J Biol Chem. 1999 Oct 8;274(41):29483-92. doi: 10.1074/jbc.274.41.29483.
14. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
15. Defective calcium homeostasis in the cerebellum in a mouse model of Niemann-Pick A disease. Ginzburg L and Futerman AH, J Neurochem. 2005 Dec;95(6):1619-28. Epub 2005 Nov 8.
16. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
17. Intracerebroventricular administration of quinolinic acid induces a selective decrease of inositol(1,4,5)-trisphosphate receptor in rat brain. Haug LS, etal., Neurochem Int. 1998 Aug;33(2):109-19.
18. Decreased inositol (1,4,5)-trisphosphate receptor levels in Alzheimer's disease cerebral cortex: selectivity of changes and possible correlation to pathological severity. Haug LS, etal., Neurodegeneration. 1996 Jun;5(2):169-76.
19. Mechanism of ER stress-induced brain damage by IP(3) receptor. Higo T, etal., Neuron. 2010 Dec 9;68(5):865-78.
20. Regulation of Ca(2+) signaling in rat bile duct epithelia by inositol 1,4,5-trisphosphate receptor isoforms. Hirata K, etal., Hepatology 2002 Aug;36(2):284-96.
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PMID:8663526   PMID:8889548   PMID:9716504   PMID:9858485   PMID:10191279   PMID:10828023   PMID:11117745   PMID:11285228   PMID:11587548   PMID:11972451   PMID:12167631   PMID:12477932  
PMID:12617961   PMID:12820984   PMID:14517800   PMID:14593108   PMID:14982933   PMID:15364918   PMID:15579147   PMID:15613488   PMID:15739177   PMID:15774532   PMID:15843050   PMID:16118475  
PMID:16198415   PMID:16223514   PMID:16237118   PMID:16377004   PMID:16691292   PMID:16723353   PMID:16793548   PMID:16840702   PMID:17284437   PMID:17327232   PMID:17416589   PMID:17496801  
PMID:17502376   PMID:17590087   PMID:17636122   PMID:18799650   PMID:18835357   PMID:18955483   PMID:19120137   PMID:19141613   PMID:19292454   PMID:19386591   PMID:19752026   PMID:19845505  
PMID:19934645   PMID:19946888   PMID:20378853   PMID:20713546   PMID:20813840   PMID:21071436   PMID:21098487   PMID:21389686   PMID:22207335   PMID:22286060   PMID:22762283   PMID:22871113  
PMID:23009366   PMID:23045459   PMID:23137780   PMID:23542070   PMID:23555994   PMID:23650371   PMID:24097979   PMID:25201980   PMID:25262337   PMID:25368151   PMID:28336440   PMID:28526746  
PMID:28923351   PMID:29476059   PMID:30053369   PMID:30090007   PMID:30470765   PMID:32357304   PMID:33812310   PMID:34035440   PMID:35657697   PMID:38308199   PMID:38685831  



Itpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84142,743,401 - 143,066,505 (+)NCBIGRCr8
mRatBN7.24141,187,377 - 141,554,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4141,187,418 - 141,510,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4146,609,417 - 146,932,882 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04142,390,143 - 142,713,600 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04141,034,101 - 141,357,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04140,247,297 - 140,580,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4140,247,313 - 140,580,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04204,714,729 - 205,047,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44143,705,360 - 144,030,051NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4129,839,611 - 130,162,657 (+)NCBICelera
RH 3.4 Map4 RGD
Cytogenetic Map4q41NCBI
ITPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3834,493,348 - 4,847,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl34,493,345 - 4,847,506 (+)EnsemblGRCh38hg38GRCh38
GRCh3734,535,032 - 4,889,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3634,510,034 - 4,864,286 (+)NCBINCBI36Build 36hg18NCBI36
Build 3434,510,135 - 4,864,079NCBI
Celera34,473,120 - 4,827,522 (+)NCBICelera
Cytogenetic Map3p26.1NCBI
HuRef34,468,779 - 4,822,934 (+)NCBIHuRef
CHM1_134,485,103 - 4,839,760 (+)NCBICHM1_1
T2T-CHM13v2.034,487,354 - 4,841,309 (+)NCBIT2T-CHM13v2.0
Itpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,190,044 - 108,528,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6108,190,057 - 108,528,070 (+)EnsemblGRCm39 Ensembl
GRCm386108,213,083 - 108,551,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,213,096 - 108,551,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv376108,163,090 - 108,501,108 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366108,178,895 - 108,516,886 (+)NCBIMGSCv36mm8
Celera6110,018,018 - 110,348,287 (+)NCBICelera
Cytogenetic Map6E1- E2NCBI
cM Map649.74NCBI
ITPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v224,506,900 - 4,861,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan134,511,663 - 4,865,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v034,448,574 - 4,802,545 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.134,549,775 - 4,904,811 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl34,572,921 - 4,904,811 (+)Ensemblpanpan1.1panPan2
ITPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12012,746,171 - 13,065,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2012,747,315 - 13,064,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2012,719,920 - 13,038,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02012,789,247 - 13,108,309 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2012,789,627 - 13,108,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12012,494,231 - 12,813,462 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02012,835,196 - 13,153,754 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02012,821,769 - 13,140,816 (-)NCBIUU_Cfam_GSD_1.0
Itpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494210,941,137 - 11,243,016 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365773,896,390 - 4,198,411 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365773,896,455 - 4,198,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1361,068,126 - 61,398,912 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11361,068,131 - 61,398,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21367,499,295 - 67,702,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12240,574,569 - 40,925,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2240,574,374 - 40,926,842 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041125,743,247 - 126,095,217 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477314,856,804 - 15,193,168 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477314,856,803 - 15,193,173 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Itpr1
2115 total Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
4 140446453 140446454 A C snv SHR/NHsd (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:2097
Count of miRNA genes:288
Interacting mature miRNAs:363
Transcripts:ENSRNOT00000040255, ENSRNOT00000041130, ENSRNOT00000043646, ENSRNOT00000064025
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 53 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat

1 to 10 of 53 rows
D4Rat195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,356,262 - 141,356,570 (+)MAPPERmRatBN7.2
mRatBN7.24141,356,262 - 141,356,469 (+)MAPPERmRatBN7.2
Rnor_6.04140,425,986 - 140,426,192NCBIRnor6.0
Rnor_6.04140,425,986 - 140,426,293NCBIRnor6.0
Rnor_5.04204,893,198 - 204,893,404UniSTSRnor5.0
Rnor_5.04204,893,198 - 204,893,505UniSTSRnor5.0
RGSC_v3.44143,875,116 - 143,875,322UniSTSRGSC3.4
RGSC_v3.44143,875,116 - 143,875,423UniSTSRGSC3.4
RGSC_v3.44143,875,115 - 143,875,322RGDRGSC3.4
RGSC_v3.14144,119,957 - 144,120,163RGD
Celera4130,008,518 - 130,008,825UniSTS
Celera4130,008,518 - 130,008,724UniSTS
RH 3.4 Map4890.8RGD
RH 3.4 Map4890.8UniSTS
RH 2.0 Map4897.9RGD
SHRSP x BN Map465.6899RGD
Cytogenetic Map4q41UniSTS
D4Rat196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,235,569 - 141,235,720 (+)MAPPERmRatBN7.2
Rnor_6.04140,295,371 - 140,295,521NCBIRnor6.0
Rnor_5.04204,762,862 - 204,763,012UniSTSRnor5.0
RGSC_v3.44143,753,495 - 143,753,646RGDRGSC3.4
RGSC_v3.44143,753,496 - 143,753,646UniSTSRGSC3.4
RGSC_v3.14143,998,336 - 143,998,487RGD
Celera4129,887,354 - 129,887,504UniSTS
SHRSP x BN Map465.65RGD
SHRSP x BN Map465.65UniSTS
Cytogenetic Map4q41UniSTS
D4Got259  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,480,540 - 141,480,804 (+)MAPPERmRatBN7.2
Rnor_6.04140,550,598 - 140,550,861NCBIRnor6.0
Rnor_5.04205,017,750 - 205,018,013UniSTSRnor5.0
RGSC_v3.44144,000,102 - 144,000,365UniSTSRGSC3.4
Celera4130,132,792 - 130,133,055UniSTS
Cytogenetic Map4q41UniSTS
RH133754  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84142,878,751 - 142,878,932 (+)Marker Load Pipeline
mRatBN7.24141,322,729 - 141,322,910 (+)MAPPERmRatBN7.2
Rnor_6.04140,382,763 - 140,382,943NCBIRnor6.0
Rnor_5.04204,850,254 - 204,850,434UniSTSRnor5.0
RGSC_v3.44143,841,369 - 143,841,549UniSTSRGSC3.4
Celera4129,974,518 - 129,974,698UniSTS
RH 3.4 Map4885.6UniSTS
Cytogenetic Map4q41UniSTS
RH94529  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,510,212 - 141,510,376 (+)MAPPERmRatBN7.2
Rnor_6.04140,580,470 - 140,580,633NCBIRnor6.0
Rnor_5.04205,047,622 - 205,047,785UniSTSRnor5.0
RGSC_v3.44144,029,773 - 144,029,936UniSTSRGSC3.4
Celera4130,162,378 - 130,162,541UniSTS
RH 3.4 Map4890.9UniSTS
Cytogenetic Map4q41UniSTS
RH140203  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84143,065,958 - 143,066,152 (+)Marker Load Pipeline
mRatBN7.24141,509,945 - 141,510,139 (+)MAPPERmRatBN7.2
Rnor_6.04140,580,203 - 140,580,396NCBIRnor6.0
Rnor_5.04205,047,355 - 205,047,548UniSTSRnor5.0
RGSC_v3.44144,029,506 - 144,029,699UniSTSRGSC3.4
Celera4130,162,111 - 130,162,304UniSTS
RH 3.4 Map4886.7UniSTS
Cytogenetic Map4q41UniSTS
AU048843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,306,952 - 141,307,250 (+)MAPPERmRatBN7.2
Rnor_6.04140,366,986 - 140,367,283NCBIRnor6.0
Rnor_5.04204,834,477 - 204,834,774UniSTSRnor5.0
RGSC_v3.44143,825,377 - 143,825,674UniSTSRGSC3.4
Celera4129,958,745 - 129,959,042UniSTS
Cytogenetic Map4q41UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 29 of 29 rows
RefSeq Transcripts NM_001007235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF402715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ233032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J05510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENSRNOT00000040255   ⟹   ENSRNOP00000043615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4140,247,313 - 140,579,675 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000041130   ⟹   ENSRNOP00000049540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4141,209,285 - 141,510,491 (+)Ensembl
Rnor_6.0 Ensembl4140,247,335 - 140,580,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043646   ⟹   ENSRNOP00000048661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4141,187,418 - 141,510,491 (+)Ensembl
Rnor_6.0 Ensembl4140,247,335 - 140,580,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000064025   ⟹   ENSRNOP00000063885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4141,187,418 - 141,510,491 (+)Ensembl
Rnor_6.0 Ensembl4140,247,335 - 140,580,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082723   ⟹   ENSRNOP00000075403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4141,317,533 - 141,510,491 (+)Ensembl
Rnor_6.0 Ensembl4140,377,565 - 140,579,477 (+)Ensembl
RefSeq Acc Id: NM_001007235   ⟹   NP_001007236
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84142,743,440 - 143,066,505 (+)NCBI
mRatBN7.24141,187,418 - 141,510,492 (+)NCBI
Rnor_6.04140,247,335 - 140,580,749 (+)NCBI
Rnor_5.04204,714,729 - 205,047,901 (+)NCBI
RGSC_v3.44143,705,360 - 144,030,051 (+)RGD
Celera4129,839,611 - 130,162,657 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270596   ⟹   NP_001257525
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84142,743,440 - 143,066,505 (+)NCBI
mRatBN7.24141,187,418 - 141,510,492 (+)NCBI
Rnor_6.04140,247,335 - 140,580,749 (+)NCBI
Rnor_5.04204,714,729 - 205,047,901 (+)NCBI
Celera4129,839,611 - 130,162,657 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270597   ⟹   NP_001257526
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84142,743,440 - 143,066,505 (+)NCBI
mRatBN7.24141,187,418 - 141,510,492 (+)NCBI
Rnor_6.04140,247,335 - 140,580,749 (+)NCBI
Rnor_5.04204,714,729 - 205,047,901 (+)NCBI
Celera4129,839,611 - 130,162,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063285577   ⟹   XP_063141647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84142,743,401 - 143,066,505 (+)NCBI
RefSeq Acc Id: NP_001007236   ⟸   NM_001007235
- Peptide Label: isoform 1
- UniProtKB: Q62869 (UniProtKB/Swiss-Prot),   P29994 (UniProtKB/Swiss-Prot),   C7E1V2 (UniProtKB/TrEMBL),   F1LQS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257526   ⟸   NM_001270597
- Peptide Label: isoform 3
- UniProtKB: A0A0A0MY31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257525   ⟸   NM_001270596
- Peptide Label: isoform 2
- UniProtKB: Q62869 (UniProtKB/Swiss-Prot),   P29994 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075403   ⟸   ENSRNOT00000082723
Ensembl Acc Id: ENSRNOP00000049540   ⟸   ENSRNOT00000041130

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13693288
Promoter ID:EPDNEW_R3807
Type:single initiation site
Name:Itpr1_1
Description:inositol 1,4,5-trisphosphate receptor, type 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04140,247,229 - 140,247,289EPDNEW


1 to 40 of 50 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43454 BioCyc
Ensembl Genes ENSRNOG00000007104 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000043646 ENTREZGENE
  ENSRNOT00000064025 ENTREZGENE
  ENSRNOT00000151720 ENTREZGENE
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  2.80.10.50 UniProtKB/Swiss-Prot
  IP3 receptor type 1 binding core, RIH domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7316579 IMAGE-MGC_LOAD
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  Ins145_P3_rcpt UniProtKB/Swiss-Prot
  InsP3_rcpt UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot
  MIR_dom_sf UniProtKB/Swiss-Prot
  MIR_motif UniProtKB/Swiss-Prot
  RIH_assoc-dom UniProtKB/Swiss-Prot
  RIH_dom UniProtKB/Swiss-Prot
  Ryanodine_IP3_receptor UniProtKB/Swiss-Prot
  RyR/IP3R_RIH_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:25262 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109369 IMAGE-MGC_LOAD
NCBI Gene 25262 ENTREZGENE
PANTHER INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR, TYPE 1A UniProtKB/Swiss-Prot
  MIR DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam Ins145_P3_rec UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot
  MIR UniProtKB/Swiss-Prot
  RIH_assoc UniProtKB/Swiss-Prot
  RYDR_ITPR UniProtKB/Swiss-Prot
PharmGKB ITPR1 RGD
PhenoGen Itpr1 PhenoGen
PRINTS INSP3RECEPTR UniProtKB/Swiss-Prot
PROSITE MIR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007104 RatGTEx
SMART MIR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100909 UniProtKB/Swiss-Prot
  SSF48371 UniProtKB/Swiss-Prot
  SSF82109 UniProtKB/Swiss-Prot
TIGR TC228573
UniProt A0A0A0MY31 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 50 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Itpr1  inositol 1,4,5-trisphosphate receptor, type 1  Itpr1  inositol 1,4,5-triphosphate receptor, type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-17 Itpr1  inositol 1,4,5-triphosphate receptor, type 1  Itpr1  inositol 1,4,5-triphosphate receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Itpr1  inositol 1,4,5-triphosphate receptor 1    inositol 1,4,5-triphosphate receptor type 1  Name updated 629478 APPROVED
2002-06-10 Itpr1  inositol 1,4,5-triphosphate receptor type 1      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_process mobilizes calcium ion permeability in insulin secreting cells 68695
gene_process plays a role in insulin secretion 68695
gene_regulation down regulated in response to muscarinic receptor activation by carbachol 68695
gene_transcript has two alternative splicing forms which are differentially expressed in a neuronal and non-neuronal manner 729259