Gss (glutathione synthetase) - Rat Genome Database

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Gene: Gss (glutathione synthetase) Rattus norvegicus
Analyze
Symbol: Gss
Name: glutathione synthetase
RGD ID: 2752
Description: Enables several functions, including anion binding activity; glutathione synthase activity; and identical protein binding activity. Involved in several processes, including glutathione biosynthetic process; response to amino acid; and response to tumor necrosis factor. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Alzheimer's disease; congenital nonspherocytic hemolytic anemia 6; glutathione synthetase deficiency; and glutatione synthetase deficiency with 5-oxoprolinuria. Orthologous to human GSS (glutathione synthetase); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; glutamic acid/glutamate metabolic pathway; glutathione metabolic pathway; INTERACTS WITH (R)-lipoic acid; 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glutathione synthase; Glutathione synthetase gene; GSH synthetase; GSH-S
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,508,005 - 164,538,343 (-)NCBIGRCr8
mRatBN7.23144,047,849 - 144,078,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,047,850 - 144,078,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,914,375 - 147,944,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,531,652 - 156,561,750 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,271,186 - 154,301,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,076,254 - 151,106,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,076,254 - 151,106,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,443,738 - 157,474,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,057,517 - 146,087,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,963,138 - 145,993,442 (-)NCBI
Celera3142,772,407 - 142,802,700 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatAcute Experimental Pancreatitis  IEP 11353819 RGD 
GssRatAlzheimer's disease  ISOGSS (Homo sapiens)5508441 RGD 
GssRatglutathione synthetase deficiency  ISOGSS (Homo sapiens)1302516DNA:missense mutations:cds:multiple (human)RGD 
GssRatglutathione synthetase deficiency  ISOGSS (Homo sapiens)1599324DNA:mutations: :multiple (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatcongenital nonspherocytic hemolytic anemia 6  ISOGSS (Homo sapiens)8554872ClinVar Annotator: match by term: Glutathione synthetase deficiency without 5-oxoprolinuriaClinVarPMID:10369661 more ...
GssRatgenetic disease  ISOGSS (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:15717202 more ...
GssRatglutathione synthetase deficiency  ISOGSS (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10369661 more ...
GssRatglutatione synthetase deficiency with 5-oxoprolinuria  ISOGSS (Homo sapiens)8554872ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCYClinVarPMID:10369661 more ...
GssRatlong QT syndrome  ISOGSS (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:28492532
GssRatschizophrenia  ISOGSS (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatAnimal Mammary Neoplasms  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
GssRatcarcinoma  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
GssRatcontact dermatitis  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25724174
GssRatExperimental Mammary Neoplasms  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
GssRatglutathione synthetase deficiency  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
GssRatmouth disease  ISOGSS (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17682004
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatcongenital nonspherocytic hemolytic anemia 6  ISOGSS (Homo sapiens)7240710 OMIM 
GssRatglutatione synthetase deficiency with 5-oxoprolinuria  ISOGSS (Homo sapiens)7240710 OMIM 

1 to 20 of 239 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRat(-)-epigallocatechin 3-gallate decreases expressionISOGSS (Homo sapiens)6480464epigallocatechin gallate results in decreased expression of GSS mRNACTDPMID:18851785
GssRat(-)-epigallocatechin 3-gallate increases expressionISOGss (Mus musculus)6480464epigallocatechin gallate results in increased expression of GSS mRNACTDPMID:25585349
GssRat(-)-quinic acid multiple interactionsISOGSS (Homo sapiens)6480464[Hydrogen Peroxide co-treated with Quinic Acid analog] results in increased expression of GSS mRNACTDPMID:21751221
GssRat(1->4)-beta-D-glucan multiple interactionsISOGss (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of GSS mRNACTDPMID:36331819
GssRat(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [methylmercuric chloride results in decreased activity of GSS protein]CTDPMID:32061141
GssRat1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of GSS mRNACTDPMID:32387197
GssRat1,2-dimethylhydrazine multiple interactionsISOGss (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of GSS mRNA]CTDPMID:22206623
GssRat1,2-dimethylhydrazine increases expressionISOGss (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of GSS mRNACTDPMID:22206623
GssRat1,4-benzoquinone increases expressionISOGSS (Homo sapiens)6480464quinone results in increased expression of GSS proteinCTDPMID:21059386
GssRat1,4-benzoquinone multiple interactionsISOGSS (Homo sapiens)6480464NFE2L2 mRNA affects the reaction [quinone results in increased expression of GSS protein]CTDPMID:21059386
GssRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of GSS mRNACTDPMID:20551477
GssRat17alpha-ethynylestradiol increases expressionISOGss (Mus musculus)6480464Ethinyl Estradiol results in increased expression of GSS mRNACTDPMID:17942748
GssRat17alpha-ethynylestradiol multiple interactionsISOGss (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GSS mRNACTDPMID:17942748
GssRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of GSS mRNACTDPMID:17108234 and PMID:29097150
GssRat17beta-estradiol decreases expressionISOGSS (Homo sapiens)6480464Estradiol results in decreased expression of GSS mRNACTDPMID:16705744
GssRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of GSS mRNACTDPMID:32145629
GssRat17beta-estradiol multiple interactionsISOGss (Mus musculus)6480464[Polyphenols co-treated with Estradiol] results in decreased expression of GSS mRNACTDPMID:30077407
GssRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOGSS (Homo sapiens)6480464Metribolone results in increased expression of GSS proteinCTDPMID:17152098
GssRat1H-pyrazole increases expressionISOGss (Mus musculus)6480464pyrazole results in increased expression of GSS mRNACTDPMID:17945193
GssRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOGss (Mus musculus)64804642 more ...CTDPMID:32352317

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Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatglutathione biosynthetic process  IDA 1599340 RGD 
GssRatglutathione biosynthetic process involved_inIEAInterPro:IPR004887 more ...1600115GO_REF:0000002InterProGO_REF:0000002
GssRatglutathione biosynthetic process involved_inIEAUniProtKB-KW:KW-03171600115GO_REF:0000043UniProtGO_REF:0000043
GssRatglutathione biosynthetic process involved_inIEAUniPathway:UPA001421600115GO_REF:0000041UniProtGO_REF:0000041
GssRatresponse to amino acid  IEP 2307430 RGD 
GssRatresponse to cadmium ion acts_upstream_of_or_withinISOGss (Mus musculus)1624291 PMID:8660701RGDPMID:8660701
GssRatresponse to cadmium ion acts_upstream_of_or_withinIEAUniProtKB:P51855 and ensembl:ENSMUSP000000786301600115GO_REF:0000107EnsemblGO_REF:0000107
GssRatresponse to nutrient levels  IEP 2307430 RGD 
GssRatresponse to tumor necrosis factor  IEP 2316556 RGD 
GssRatresponse to xenobiotic stimulus  IEP 2301454 RGD 
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatcytosol is_active_inIBAPANTHER:PTN000122964 and TAIR:locus:21463951600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 20 of 40 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatATP binding  IDA 1599340 RGD 
GssRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
GssRatATP binding enablesIEAUniProtKB:P48637 and ensembl:ENSP000004983031600115GO_REF:0000107EnsemblGO_REF:0000107
GssRatATP binding enablesIEAInterPro:IPR004887 more ...1600115GO_REF:0000002InterProGO_REF:0000002
GssRatATP binding enablesISOGSS (Homo sapiens)1624291 PMID:10369661RGDPMID:10369661
GssRatATP binding enablesIEAUniRule:UR0001317681600115GO_REF:0000104UniProtGO_REF:0000104
GssRatATP binding enablesISSUniProtKB:P486371600115GO_REF:0000024UniProtGO_REF:0000024
GssRatglutathione binding  IDA 1599340 RGD 
GssRatglutathione binding enablesIEAUniProtKB:P48637 and ensembl:ENSP000004983031600115GO_REF:0000107EnsemblGO_REF:0000107
GssRatglutathione binding enablesIBAPANTHER:PTN000122964 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GssRatglutathione binding enablesISOGSS (Homo sapiens)1624291 PMID:10369661RGDPMID:10369661
GssRatglutathione binding enablesISSUniProtKB:P486371600115GO_REF:0000024UniProtGO_REF:0000024
GssRatglutathione binding enablesIEAUniRule:UR0001317681600115GO_REF:0000104UniProtGO_REF:0000104
GssRatglutathione synthase activity  IDA 69853 RGD 
GssRatglutathione synthase activity enablesIEAEC:6.3.2.31600115GO_REF:0000003UniProtGO_REF:0000003
GssRatglutathione synthase activity enablesISOGss (Mus musculus)1624291 PMID:8660701RGDPMID:8660701
GssRatglutathione synthase activity enablesIBAMGI:95852 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GssRatglutathione synthase activity enablesIEARHEA:135571600115GO_REF:0000116RHEAGO_REF:0000116
GssRatglutathione synthase activity enablesIEAInterPro:IPR004887 more ...1600115GO_REF:0000002InterProGO_REF:0000002
GssRatglutathione synthase activity enablesIEAUniProtKB:P51855 and ensembl:ENSMUSP000000786301600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 40 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GssRatglutathione metabolic pathway  IEA 6907045 KEGGrno:00480

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#
Reference Title
Reference Citation
1. Glutathione synthesis in normal liver and in Yoshida AH-130 hepatoma. Biocca ME, etal., Toxicol Pathol. 1986;14(4):415-6.
2. Missense mutations in the human glutathione synthetase gene result in severe metabolic acidosis, 5-oxoprolinuria, hemolytic anemia and neurological dysfunction. Dahl N, etal., Hum Mol Genet 1997 Jul;6(7):1147-52.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Effects of chondroitin sulfate on alteration of actin cytoskeleton in rats with acute necrotizing pancreatitis. He ZY and Guo RX, Hepatobiliary Pancreat Dis Int. 2007 Oct;6(5):537-43.
6. Amino acid sequence of rat kidney glutathione synthetase. Huang CS, etal., Proc Natl Acad Sci U S A 1995 Feb 14;92(4):1232-6.
7. High fat feeding and dietary L-arginine supplementation differentially regulate gene expression in rat white adipose tissue. Jobgen W, etal., Amino Acids. 2009 May;37(1):187-98. Epub 2009 Feb 12.
8. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
9. Coordinated changes in xenobiotic metabolizing enzyme gene expression in aging male rats. Lee JS, etal., Toxicol Sci. 2008 Nov;106(1):263-83. Epub 2008 Jul 24.
10. Gender differences in glutathione metabolism in Alzheimer's disease. Liu H, etal., J Neurosci Res. 2005 Mar 15;79(6):861-7.
11. Novel kinetics of mammalian glutathione synthetase: characterization of gamma-glutamyl substrate cooperative binding. Luo JL, etal., Biochem Biophys Res Commun. 2000 Aug 28;275(2):577-81.
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Mutations in the glutathione synthetase gene cause 5-oxoprolinuria. Shi ZZ, etal., Nat Genet. 1996 Nov;14(3):361-5.
20. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:8660701   PMID:10369661   PMID:15489334   PMID:19056867   PMID:21988832   PMID:23376485   PMID:23533145   PMID:25416956   PMID:26871637  



Gss
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,508,005 - 164,538,343 (-)NCBIGRCr8
mRatBN7.23144,047,849 - 144,078,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,047,850 - 144,078,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,914,375 - 147,944,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,531,652 - 156,561,750 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,271,186 - 154,301,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,076,254 - 151,106,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,076,254 - 151,106,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,443,738 - 157,474,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,057,517 - 146,087,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,963,138 - 145,993,442 (-)NCBI
Celera3142,772,407 - 142,802,700 (-)NCBICelera
Cytogenetic Map3q42NCBI
GSS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,928,432 - 34,956,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,928,432 - 34,956,027 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,516,235 - 33,543,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,979,897 - 33,007,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 342032,979,897 - 33,007,262NCBI
Celera2030,265,329 - 30,292,695 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,294,556 - 30,321,979 (-)NCBIHuRef
CHM1_12033,417,456 - 33,444,826 (-)NCBICHM1_1
T2T-CHM13v2.02036,649,086 - 36,676,682 (-)NCBIT2T-CHM13v2.0
Gss
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,405,101 - 155,434,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,405,101 - 155,434,730 (-)EnsemblGRCm39 Ensembl
GRCm382155,563,181 - 155,592,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,563,181 - 155,592,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,388,919 - 155,418,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,254,624 - 155,284,147 (-)NCBIMGSCv36mm8
Celera2161,495,432 - 161,524,969 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Gss
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,427,581 - 26,463,781 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,427,581 - 26,483,380 (+)NCBIChiLan1.0ChiLan1.0
GSS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,661,205 - 40,688,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,654,308 - 40,682,219 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,256,734 - 31,284,356 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,381,745 - 32,409,327 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,381,745 - 32,409,297 (-)Ensemblpanpan1.1panPan2
GSS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,973,807 - 24,000,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,901,045 - 23,997,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,619,971 - 23,646,466 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,665,657 - 24,692,375 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,665,043 - 24,692,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,952,937 - 23,979,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,048,251 - 24,074,736 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,487,171 - 24,513,688 (-)NCBIUU_Cfam_GSD_1.0
Gss
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,955,595 - 172,983,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,765,610 - 5,793,567 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,765,637 - 5,793,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,312,720 - 38,342,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,316,199 - 38,342,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,511,098 - 43,539,281 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,230,629 - 39,258,511 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,230,487 - 39,254,648 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,554,278 - 87,582,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gss
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,446,721 - 4,478,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,445,015 - 4,470,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gss
137 total Variants

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:69
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000025657
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat

1 to 10 of 33 rows
D3Got112  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,050,848 - 144,051,023 (+)MAPPERmRatBN7.2
Rnor_6.03151,079,253 - 151,079,427NCBIRnor6.0
Rnor_5.03157,446,738 - 157,446,912UniSTSRnor5.0
RGSC_v3.43146,060,515 - 146,060,690RGDRGSC3.4
RGSC_v3.43146,060,516 - 146,060,690UniSTSRGSC3.4
RGSC_v3.13145,966,138 - 145,966,312RGD
Celera3142,775,406 - 142,775,580UniSTS
RH 3.4 Map31298.6RGD
RH 3.4 Map31298.6UniSTS
Cytogenetic Map3q42UniSTS
RH127607  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,048,021 - 144,048,222 (+)MAPPERmRatBN7.2
Rnor_6.03151,076,426 - 151,076,626NCBIRnor6.0
Rnor_5.03157,443,911 - 157,444,111UniSTSRnor5.0
RGSC_v3.43146,057,689 - 146,057,889UniSTSRGSC3.4
Celera3142,772,579 - 142,772,779UniSTS
RH 3.4 Map31305.9UniSTS
Cytogenetic Map3q42UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000025657   ⟹   ENSRNOP00000025657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,047,852 - 144,078,198 (-)Ensembl
Rnor_6.0 Ensembl3151,076,254 - 151,106,557 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115033   ⟹   ENSRNOP00000094043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,047,850 - 144,078,028 (-)Ensembl
RefSeq Acc Id: NM_012962   ⟹   NP_037094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,508,005 - 164,538,306 (-)NCBI
mRatBN7.23144,047,850 - 144,078,154 (-)NCBI
Rnor_6.03151,076,254 - 151,106,557 (-)NCBI
Rnor_5.03157,443,738 - 157,474,042 (-)NCBI
RGSC_v3.43146,057,517 - 146,087,820 (-)RGD
Celera3142,772,407 - 142,802,700 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104373   ⟹   XP_038960301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,508,007 - 164,538,343 (-)NCBI
mRatBN7.23144,047,849 - 144,078,197 (-)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_037094 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960301 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA64618 (Get FASTA)   NCBI Sequence Viewer  
  AAH78700 (Get FASTA)   NCBI Sequence Viewer  
  EDL85908 (Get FASTA)   NCBI Sequence Viewer  
  EDL85909 (Get FASTA)   NCBI Sequence Viewer  
  EDL85910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025657
  ENSRNOP00000025657.2
  ENSRNOP00000107930
GenBank Protein P46413 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_037094   ⟸   NM_012962
- UniProtKB: P46413 (UniProtKB/Swiss-Prot),   A6KI44 (UniProtKB/TrEMBL),   A0A8I6AYD3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025657   ⟸   ENSRNOT00000025657
RefSeq Acc Id: XP_038960301   ⟸   XM_039104373
- Peptide Label: isoform X1
- UniProtKB: A6KI45 (UniProtKB/TrEMBL),   A0A8I6AYD3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094043   ⟸   ENSRNOT00000115033
Name Modeler Protein Id AA Range Protein Structure
AF-P46413-F1-model_v2 AlphaFold P46413 1-474 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692585
Promoter ID:EPDNEW_R3110
Type:initiation region
Name:Gss_1
Description:glutathione synthetase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03151,106,540 - 151,106,600EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47127 BioCyc
BioCyc Pathway GLUTATHIONESYN-PWY [glutathione biosynthesis] BioCyc
  PWY-8043 [ophthalmate biosynthesis] BioCyc
BioCyc Pathway Image GLUTATHIONESYN-PWY BioCyc
  PWY-8043 BioCyc
Ensembl Genes ENSRNOG00000018964 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025657 ENTREZGENE
  ENSRNOT00000025657.3 UniProtKB/Swiss-Prot
  ENSRNOT00000170884 ENTREZGENE
Gene3D-CATH 3.30.1490.50 UniProtKB/Swiss-Prot
  3.30.1490.80 UniProtKB/Swiss-Prot
  3.40.50.1760 UniProtKB/Swiss-Prot
  ATP-grasp fold, B domain UniProtKB/Swiss-Prot
  Glutathione Synthetase, Chain A, domain 3 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110971 IMAGE-MGC_LOAD
InterPro Glutathione_synthase UniProtKB/Swiss-Prot
  Glutathione_synthase_a-hlx UniProtKB/Swiss-Prot
  Glutathione_synthase_C_euk UniProtKB/Swiss-Prot
  Glutathione_synthase_N_euk UniProtKB/Swiss-Prot
  GSH-S_sub-bd_sf UniProtKB/Swiss-Prot
  GSH_synth_subst-bd UniProtKB/Swiss-Prot
  PreATP-grasp_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:25458 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93095 IMAGE-MGC_LOAD
NCBI Gene 25458 ENTREZGENE
PANTHER GLUTATHIONE SYNTHETASE UniProtKB/Swiss-Prot
  PTHR11130 UniProtKB/Swiss-Prot
Pfam GSH_synth_ATP UniProtKB/Swiss-Prot
  GSH_synthase UniProtKB/Swiss-Prot
PharmGKB GSS RGD
PhenoGen Gss PhenoGen
PIRSF GSHase UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018964 RatGTEx
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/Swiss-Prot
  SSF52440 UniProtKB/Swiss-Prot
TIGR TC230939
UniProt A0A8I6AYD3 ENTREZGENE, UniProtKB/TrEMBL
  A6KI43_RAT UniProtKB/TrEMBL
  A6KI44 ENTREZGENE, UniProtKB/TrEMBL
  A6KI45 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Gss  glutathione synthetase      Name updated 70584 APPROVED

Note Type Note Reference
gene_expression mRNA and enzyme are detected in kidney 69853