Gpi (glucose-6-phosphate isomerase) - Rat Genome Database

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Gene: Gpi (glucose-6-phosphate isomerase) Rattus norvegicus
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Symbol: Gpi
Name: glucose-6-phosphate isomerase
RGD ID: 2727
Description: Enables glucose-6-phosphate isomerase activity and monosaccharide binding activity. Involved in several processes, including response to estradiol; response to progesterone; and response to testosterone. Predicted to be located in ciliary membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; congenital nonspherocytic hemolytic anemia; congenital nonspherocytic hemolytic anemia 4; intellectual disability; and neuromuscular disease. Orthologous to human GPI (glucose-6-phosphate isomerase); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Amf; autocrine motility factor; glucose phosphate isomerase; Gpi1; neuroleukin; Nlk; Pgi; Phi; phosphoglucose isomerase; phosphohexose isomerase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,965,389 - 95,996,932 (-)NCBIGRCr8
mRatBN7.2186,828,211 - 86,856,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,231,564 - 92,259,517 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,697,568 - 100,725,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,989,860 - 94,017,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,063,411 - 90,091,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,063,411 - 90,091,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0191,207,014 - 91,234,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,658,836 - 86,686,712 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,736,946 - 86,764,823 (-)NCBI
Celera181,194,482 - 81,222,306 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
GpiRatcongenital nonspherocytic hemolytic anemia 4  ISOGPI (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10916680 more ...
GpiRatgenetic disease  ISOGPI (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:19064002 more ...
GpiRathemolytic anemia  ISOGPI (Homo sapiens)8554872ClinVar Annotator: match by term: Hemolytic anemiaClinVarPMID:32581362
GpiRathereditary spastic paraplegia 75  ISOGPI (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 75ClinVarPMID:28492532
GpiRathereditary spherocytosis  ISOGPI (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spherocytosisClinVarPMID:25741868
GpiRatMental Retardation, Autosomal Recessive 42  ISOGPI (Homo sapiens)8554872ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH DYSMORPHIC FEATURES more ...ClinVarPMID:25741868
Object Symbol
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Original Reference(s)
GpiRatAnimal Disease Models  ISOGpi1 (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772
GpiRatBreast Neoplasms  ISOGPI (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17659439
GpiRathemolytic anemia  ISOGPI (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8822954
GpiRatlung adenocarcinoma  ISOGpi1 (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772
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Original Reference(s)
GpiRatcongenital nonspherocytic hemolytic anemia  ISSGPI (Homo sapiens)13592920OMIM:206300 more ...MouseDO 
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Original Reference(s)
GpiRatcongenital nonspherocytic hemolytic anemia 4  ISOGPI (Homo sapiens)7240710 OMIM 

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Original Reference(s)
GpiRat(1->4)-beta-D-glucan multiple interactionsISOGpi1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of GPI1 mRNACTDPMID:36331819
GpiRat1,2-dimethylhydrazine decreases expressionISOGpi1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of GPI1 mRNACTDPMID:22206623
GpiRat1-chloro-2,4-dinitrobenzene affects bindingISOGPI (Homo sapiens)6480464Dinitrochlorobenzene binds to GPI proteinCTDPMID:32991956
GpiRat17alpha-ethynylestradiol increases expressionISOGpi1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of GPI1 mRNACTDPMID:17942748
GpiRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of GPI mRNACTDPMID:32145629
GpiRat17beta-estradiol decreases expressionISOGpi1 (Mus musculus)6480464Estradiol results in decreased expression of GPI1 mRNACTDPMID:39298647
GpiRat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOGpi1 (Mus musculus)6480464Dihydrotestosterone results in increased expression of GPI1 mRNACTDPMID:17023530
GpiRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOGPI (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of GPI mRNACTDPMID:19684285
GpiRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of GPI mRNACTDPMID:34747641
GpiRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOGPI (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of GPI mRNACTDPMID:23152189
GpiRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOGPI (Homo sapiens)64804642-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of GPI mRNA] and alpha-naphthoflavone inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of GPI mRNA]CTDPMID:23152189
GpiRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of GPI mRNACTDPMID:22298810
GpiRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOGpi1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of GPI1 mRNACTDPMID:15667827 and PMID:19770486
GpiRat2,6-dimethoxyphenol multiple interactionsISOGPI (Homo sapiens)6480464[pyrogallol 1 more ...CTDPMID:38598786
GpiRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of GPI mRNACTDPMID:21346803
GpiRat2-bromohexadecanoic acid multiple interactionsISOGPI (Homo sapiens)64804642-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in increased palmitoylation of GPI protein]CTDPMID:38195004
GpiRat4,4'-sulfonyldiphenol increases expressionISOGPI (Homo sapiens)6480464bisphenol S results in increased expression of GPI mRNACTDPMID:31121516
GpiRat4,4'-sulfonyldiphenol affects expressionISOGpi1 (Mus musculus)6480464bisphenol S affects the expression of GPI1 mRNACTDPMID:39298647
GpiRat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2 and 6-dinitrotoluene affects the expression of GPI mRNACTDPMID:21346803
GpiRat4-hydroxyphenyl retinamide increases expressionISOGpi1 (Mus musculus)6480464Fenretinide results in increased expression of GPI mRNACTDPMID:28973697

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Biological Process
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Original Reference(s)
GpiRatcanonical glycolysis involved_inISOGpi1 (Mus musculus)1624291 PMID:8417789RGDPMID:8417789
GpiRatcanonical glycolysis involved_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatcarbohydrate derivative metabolic process involved_inIEAInterPro:IPR0463481600115GO_REF:0000002InterProGO_REF:0000002
GpiRaterythrocyte homeostasis acts_upstream_of_or_withinISOGpi1 (Mus musculus)1624291MGI:1857274 PMID:8417789RGDPMID:8417789
GpiRaterythrocyte homeostasis acts_upstream_of_or_withinIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatfructose 6-phosphate metabolic process involved_inISOGpi1 (Mus musculus)1624291 PMID:6767907RGDPMID:6767907
GpiRatfructose 6-phosphate metabolic process involved_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatgluconeogenesis involved_inIEAUniProtKB-KW:KW-03121600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatgluconeogenesis involved_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatgluconeogenesis involved_inIEAInterPro:IPR001672 and InterPro:IPR0181891600115GO_REF:0000002InterProGO_REF:0000002
GpiRatgluconeogenesis involved_inISOGpi1 (Mus musculus)1624291 PMID:31891762RGDPMID:31891762
GpiRatgluconeogenesis involved_inIBAMGI:95797 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GpiRatglucose 6-phosphate metabolic process  IDA 1600643 RGD 
GpiRatglucose 6-phosphate metabolic process involved_inIEAUniProtKB:P06744 and ensembl:ENSP000003488771600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatglucose 6-phosphate metabolic process involved_inISOGpi1 (Mus musculus)1624291 PMID:6767907RGDPMID:6767907
GpiRatglucose 6-phosphate metabolic process involved_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatglucose 6-phosphate metabolic process involved_inIBAFB:FBgn0003074 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GpiRatglucose 6-phosphate metabolic process involved_inISOGPI (Homo sapiens)1624291 PMID:28803808RGDPMID:28803808
GpiRatglucose homeostasis acts_upstream_of_or_withinISOGpi1 (Mus musculus)1624291MGI:1857274 PMID:8417789RGDPMID:8417789
GpiRatglucose homeostasis acts_upstream_of_or_withinIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
GpiRatciliary membrane located_inISOGpi1 (Mus musculus)1624291 PMID:22179047RGDPMID:22179047
GpiRatciliary membrane located_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
GpiRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatcytosol is_active_inIBAFB:FBgn0003074 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GpiRatcytosol is_active_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatcytosol is_active_inISOGpi1 (Mus musculus)1624291 PMID:26080680 and PMID:6986434RGDPMID:26080680 and PMID:6986434
GpiRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
GpiRatextracellular space located_inIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatplasma membrane located_inISOGpi1 (Mus musculus)1624291 PMID:22179047RGDPMID:22179047
GpiRatplasma membrane located_inIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
GpiRatcarbohydrate derivative binding enablesIEAInterPro:IPR0463481600115GO_REF:0000002InterProGO_REF:0000002
GpiRatcytokine activity enablesIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatglucose-6-phosphate isomerase activity  IDA 1599371 RGD 
GpiRatglucose-6-phosphate isomerase activity  IDA 1600643 RGD 
GpiRatglucose-6-phosphate isomerase activity enablesIEAUniProtKB:P06745 and ensembl:ENSMUSP000000493551600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatglucose-6-phosphate isomerase activity enablesIBAFB:FBgn0003074 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
GpiRatglucose-6-phosphate isomerase activity enablesIEARHEA:118161600115GO_REF:0000116RHEAGO_REF:0000116
GpiRatglucose-6-phosphate isomerase activity enablesISOGpi1 (Mus musculus)1624291MGI:1857497 more ...RGDPMID:1180875 more ...
GpiRatglucose-6-phosphate isomerase activity enablesIEAEC:5.3.1.91600115GO_REF:0000003UniProtGO_REF:0000003
GpiRatglucose-6-phosphate isomerase activity enablesIEAUniProtKB:P06744 and ensembl:ENSP000003488771600115GO_REF:0000107EnsemblGO_REF:0000107
GpiRatglucose-6-phosphate isomerase activity enablesISOGPI (Homo sapiens)1624291 PMID:28803808RGDPMID:28803808
GpiRatglucose-6-phosphate isomerase activity enablesIEAInterPro:IPR001672 more ...1600115GO_REF:0000002InterProGO_REF:0000002
GpiRatgrowth factor activity enablesIEAUniProtKB-KW:KW-03391600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatisomerase activity enablesIEAUniProtKB-KW:KW-04131600115GO_REF:0000043UniProtGO_REF:0000043
GpiRatmonosaccharide binding  IPIketo-D-fructose 6-phosphate1600643Fructose-6-phosphate bindingRGD 
GpiRatmonosaccharide binding enablesIBAPANTHER:PTN000157839 and Gpi (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
GpiRatmonosaccharide binding  IPIalpha-D-glucose 6-phosphate1600643Glucose-6-phosphate bindingRGD 
GpiRatprotein binding enablesISOGpi1 (Mus musculus)1624291UniProtKB:Q2EMV9 and PMID:17875708RGDPMID:17875708
GpiRatprotein binding enablesISOGPI (Homo sapiens)1624291UniProtKB:Q96BW9 and PMID:27499296RGDPMID:27499296
GpiRatubiquitin protein ligase binding enablesISOGPI (Homo sapiens)1624291UniProtKB:Q9UKV5 and PMID:24810856RGDPMID:24810856
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RGD Manual Annotations


  
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Original Reference(s)
GpiRathexosamine biosynthetic pathway   ISOGPI (Homo sapiens)1625539 RGD 

Imported Annotations - SMPDB

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Original Reference(s)
GpiRatcongenital sucrase-isomaltase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00557
GpiRatFanconi syndrome pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00572
GpiRatfructose-1,6-bisphosphatase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00562
GpiRatgluconeogenesis pathway   ISOGPI (Homo sapiens)10402751 SMPDBSMP:00128
GpiRatglycogen storage disease type Ia pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00581
GpiRatglycogen storage disease type Ia pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00374
GpiRatglycogen storage disease type Ib pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00573
GpiRatglycogen storage disease type III pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00553
GpiRatglycogen storage disease type IV pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00554
GpiRatglycogen storage disease type VI pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00555
GpiRatglycogen storage disease type VII pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00531
GpiRatglycolysis pathway   ISOGPI (Homo sapiens)10402751 SMPDBSMP:00040
GpiRatpentose phosphate pathway   ISOGPI (Homo sapiens)10402751 SMPDBSMP:00031
GpiRatphosphoenolpyruvate carboxykinase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00560
GpiRatribose 5-phosphate isomerase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00519
GpiRatstarch and sucrose metabolic pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00058
GpiRattransaldolase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00520
GpiRattriosephosphate isomerase deficiency pathway  ISOGPI (Homo sapiens)10402751 SMPDBSMP:00563
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Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
GpiRatamino sugar metabolic pathway  IEA 6907045 KEGGrno:00520
GpiRatgluconeogenesis pathway   IEA 6907045 KEGGrno:00010
GpiRatglycolysis pathway   IEA 6907045 KEGGrno:00010
GpiRatglycolysis/gluconeogenesis pathway  IEA 6907045 KEGGrno:00010
GpiRatnucleotide sugar metabolic pathway  IEA 6907045 KEGGrno:00520
GpiRatpentose phosphate pathway   IEA 6907045 KEGGrno:00030
GpiRatstarch and sucrose metabolic pathway  IEA 6907045 KEGGrno:00500

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#
Reference Title
Reference Citation
1. Cumene peroxide and Fe(2+)-ascorbate-induced lipid peroxidation and effect of phosphoglucose isomerase. Agadjanyan ZS, etal., Mol Cell Biochem. 2006 Sep;289(1-2):49-53. Epub 2006 Apr 1.
2. Glucosephosphate isomerase (GPI) deficiency mutations associated with hereditary nonspherocytic hemolytic anemia (HNSHA). Beutler E, etal., Blood Cells Mol Dis. 1997 Dec;23(3):402-9.
3. Time course of chronic oral cadmium nephrotoxicity in Wistar rats: excretion of urinary enzymes. Bomhard EM, etal., Drug Chem Toxicol. 1999 Nov;22(4):679-703.
4. The cellular fate of glucose and its relevance in type 2 diabetes. Bouche C, etal., Endocr Rev. 2004 Oct;25(5):807-30.
5. Key enzymes of carbohydrate metabolism as targets of the 11.5-kDa Zn(2+)-binding protein (parathymosin). Brand IA and Heinickel A, J Biol Chem. 1991 Nov 5;266(31):20984-9.
6. Alterations in the mRNA levels of two metabolic enzymes in rat skeletal muscle during stretch-induced hypertrophy and disuse atrophy. Brownson C and Loughna P, Pflugers Arch. 1996 Apr;431(6):990-2.
7. Evidence for the participation of opioids in the regulation of carbohydrate metabolism in rat mammary glands. Deshpande N and Mitchell I, J Endocrinol. 1980 Jun;85(3):415-21.
8. Effect of 6-phosphogluconate on phosphoglucose isomerase in rat brain in vitro and in vivo. Gaitonde MK, etal., J Neurochem. 1989 May;52(5):1348-52.
9. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. Plasma and intracellular levels of lactate dehydrogenase, phosphohexose isomerase and lysozyme activity in acute leukemia. Ho AD, etal., Blut. 1984 Jul;49(1):19-28.
11. Glycolytic enzyme levels in synaptosomes. Knull HR and Fillmore SJ, Comp Biochem Physiol B. 1985;81(2):349-51.
12. Molecular basis of neurological dysfunction coupled with haemolytic anaemia in human glucose-6-phosphate isomerase (GPI) deficiency. Kugler W, etal., Hum Genet. 1998 Oct;103(4):450-4.
13. A link between maze learning and hippocampal expression of neuroleukin and its receptor gp78. Luo Y, etal., J Neurochem. 2002 Jan;80(2):354-61.
14. Comparative study of the effects of beta-sitosterol, estradiol and progesterone on selected biochemical parameters of the uterus of ovariectomised rats. Malini T and Vanithakumari G, J Ethnopharmacol. 1992 Feb;36(1):51-5.
15. Glucose-6-phosphate isomerase deficiency associated with nonspherocytic hemolytic anemia in the mouse: an animal model for the human disease. Merkle S and Pretsch W, Blood. 1993 Jan 1;81(1):206-13.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Silencing of autocrine motility factor induces mesenchymal-to-epithelial transition and suppression of osteosarcoma pulmonary metastasis. Niinaka Y, etal., Cancer Res. 2010 Nov 15;70(22):9483-93. doi: 10.1158/0008-5472.CAN-09-3880. Epub 2010 Oct 26.
18. [Androgen regulation of aldolase and phosphohexose isomerase in the liver and seminal vesicles of white rats]. Nikulin AA, Vopr Med Khim. 1985 Mar-Apr;31(2):51-5.
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
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PMID:204065   PMID:1180875   PMID:1235912   PMID:1582174   PMID:1649192   PMID:2344351   PMID:3020690   PMID:3796661   PMID:7277315   PMID:7323947   PMID:7444718   PMID:8922529  
PMID:12054583   PMID:15155459   PMID:15665293   PMID:16229142   PMID:17634366   PMID:19056867   PMID:19199708   PMID:19946888   PMID:20458337   PMID:22179047   PMID:22206666   PMID:22871113  
PMID:23376485   PMID:23533145   PMID:24006456   PMID:24810856   PMID:26459914   PMID:27103217   PMID:28803808  



Gpi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,965,389 - 95,996,932 (-)NCBIGRCr8
mRatBN7.2186,828,211 - 86,856,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,231,564 - 92,259,517 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,697,568 - 100,725,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,989,860 - 94,017,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,063,411 - 90,091,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,063,411 - 90,091,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0191,207,014 - 91,234,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,658,836 - 86,686,712 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,736,946 - 86,764,823 (-)NCBI
Celera181,194,482 - 81,222,306 (-)NCBICelera
Cytogenetic Map1q21NCBI
GPI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,359,718 - 34,402,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,359,480 - 34,402,413 (+)EnsemblGRCh38hg38GRCh38
GRCh371934,855,645 - 34,893,318 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,547,909 - 39,583,076 (+)NCBINCBI36Build 36hg18NCBI36
Build 341939,547,908 - 39,583,076NCBI
Celera1931,557,376 - 31,605,748 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,360,777 - 31,377,222 (+)NCBIHuRef
HuRef1931,390,807 - 31,399,974 (+)NCBIHuRef
CHM1_11934,857,156 - 34,895,165 (+)NCBICHM1_1
T2T-CHM13v2.01936,886,877 - 36,946,977 (+)NCBIT2T-CHM13v2.0
Gpi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39733,900,752 - 33,929,761 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl733,900,755 - 33,929,761 (-)EnsemblGRCm39 Ensembl
GRCm38734,201,327 - 34,230,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,201,330 - 34,230,336 (-)EnsemblGRCm38mm10GRCm38
MGSCv37734,986,346 - 35,015,324 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36733,910,918 - 33,939,022 (-)NCBIMGSCv36mm8
MGSCv36724,688,418 - 24,717,214 (-)NCBIMGSCv36mm8
Celera729,335,681 - 29,371,931 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.46NCBI
Gpi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,980,999 - 4,008,652 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,980,999 - 4,007,553 (+)NCBIChiLan1.0ChiLan1.0
GPI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22040,351,367 - 40,402,743 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11942,351,411 - 42,404,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01931,301,469 - 31,355,362 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,024,584 - 40,080,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1940,024,584 - 40,080,598 (+)Ensemblpanpan1.1panPan2
GPI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,922,380 - 117,948,325 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,922,635 - 117,948,316 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1117,320,830 - 117,346,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,518,230 - 118,543,889 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,497,395 - 118,544,065 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,079,121 - 118,105,067 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,705,505 - 117,731,413 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,763,883 - 118,789,615 (-)NCBIUU_Cfam_GSD_1.0
Gpi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,037,338 - 10,063,762 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,579,372 - 1,608,788 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,582,120 - 1,608,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,038,357 - 44,069,328 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,038,374 - 44,069,331 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2639,516,820 - 39,547,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q12NCBI
GPI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1629,404,067 - 29,451,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl629,403,500 - 29,453,162 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,177,821 - 7,221,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,823,449 - 8,851,625 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,826,281 - 8,851,614 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gpi
139 total Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 86665016 86665017 C A snv MNS/Gib (ICL), SBN/Ygl (ICL), SBH/Ygl (ICL) View more Information


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 91213194 91213195 C A snv SBH/Ygl (MCW), SBN/Ygl (MCW), MNS/Gib (KNAW), SBN/Ygl (KNAW), SBH/Ygl (KNAW) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 90069591 90069592 C A snv SBH/Ygl (MCW), SBN/Ygl (MCW), MNS/Gib (RGD), European Variation Archive Release 6, SBN/Ygl (RGD), European Variation Archive Release 3, European Variation Archive Release 4, SBH/Ygl (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:48
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000032613
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 38 rows
PMC164521P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,830,299 - 86,831,706 (+)MAPPERmRatBN7.2
Rnor_6.0190,065,500 - 90,066,906NCBIRnor6.0
Rnor_5.0191,209,103 - 91,210,509UniSTSRnor5.0
RGSC_v3.4186,660,925 - 86,662,331UniSTSRGSC3.4
Celera181,196,529 - 81,197,935UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000032613   ⟹   ENSRNOP00000029515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)Ensembl
Rnor_6.0 Ensembl190,063,411 - 90,091,287 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097410   ⟹   ENSRNOP00000087782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101765   ⟹   ENSRNOP00000085356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112795   ⟹   ENSRNOP00000080691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,828,216 - 86,855,568 (-)Ensembl
RefSeq Acc Id: NM_207592   ⟹   NP_997475
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,965,393 - 95,993,261 (-)NCBI
mRatBN7.2186,828,211 - 86,856,077 (-)NCBI
Rnor_6.0190,063,411 - 90,091,287 (-)NCBI
Rnor_5.0191,207,014 - 91,234,890 (-)NCBI
RGSC_v3.4186,658,836 - 86,686,712 (-)RGD
Celera181,194,482 - 81,222,306 (-)RGD
Sequence:
RefSeq Acc Id: XM_063283685   ⟹   XP_063139755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,965,389 - 95,996,883 (-)NCBI
RefSeq Acc Id: XM_063283691   ⟹   XP_063139761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,965,389 - 95,996,932 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_997475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139755 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139761 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62005 (Get FASTA)   NCBI Sequence Viewer  
  EDM07646 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029515
  ENSRNOP00000029515.3
  ENSRNOP00000087782.1
GenBank Protein Q6P6V0 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_997475   ⟸   NM_207592
- UniProtKB: Q6P6V0 (UniProtKB/Swiss-Prot),   A0A8I6A243 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029515   ⟸   ENSRNOT00000032613
Ensembl Acc Id: ENSRNOP00000080691   ⟸   ENSRNOT00000112795
Ensembl Acc Id: ENSRNOP00000085356   ⟸   ENSRNOT00000101765
Ensembl Acc Id: ENSRNOP00000087782   ⟸   ENSRNOT00000097410

Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6V0-F1-model_v2 AlphaFold Q6P6V0 1-558 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689949
Promoter ID:EPDNEW_R473
Type:multiple initiation site
Name:Gpi_1
Description:glucose-6-phosphate isomerase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0190,091,293 - 90,091,353EPDNEW


1 to 39 of 39 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60019 BioCyc
BioCyc Pathway ANAGLYCOLYSIS-PWY [glycolysis III (from glucose)] BioCyc
  PWY-5659 [GDP-mannose biosynthesis] BioCyc
  PWY66-399 [gluconeogenesis III] BioCyc
  UDPNACETYLGALSYN-PWY [UDP-N-acetyl-D-glucosamine biosynthesis II] BioCyc
BioCyc Pathway Image ANAGLYCOLYSIS-PWY BioCyc
  PWY-5659 BioCyc
  PWY66-399 BioCyc
  UDPNACETYLGALSYN-PWY BioCyc
Ensembl Genes ENSRNOG00000023150 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000032613 ENTREZGENE
  ENSRNOT00000032613.5 UniProtKB/Swiss-Prot
  ENSRNOT00000097410.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1390.10 UniProtKB/Swiss-Prot
  Glucose-6-phosphate isomerase like protein, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599776 IMAGE-MGC_LOAD
InterPro G6P_Isomerase UniProtKB/Swiss-Prot
  G6P_Isomerase_C UniProtKB/Swiss-Prot
  Phosphoglucose_isomerase_CS UniProtKB/Swiss-Prot
  SIS_dom_sf UniProtKB/Swiss-Prot
  SIS_PGI_1 UniProtKB/Swiss-Prot
  SIS_PGI_2 UniProtKB/Swiss-Prot
KEGG Report rno:292804 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72563 IMAGE-MGC_LOAD
NCBI Gene Gpi ENTREZGENE
PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE UniProtKB/Swiss-Prot
  PTHR11469 UniProtKB/Swiss-Prot
Pfam PGI UniProtKB/Swiss-Prot
PhenoGen Gpi PhenoGen
PRINTS G6PISOMERASE UniProtKB/Swiss-Prot
PROSITE P_GLUCOSE_ISOMERASE_1 UniProtKB/Swiss-Prot
  P_GLUCOSE_ISOMERASE_2 UniProtKB/Swiss-Prot
  P_GLUCOSE_ISOMERASE_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023150 RatGTEx
Superfamily-SCOP SSF53697 UniProtKB/Swiss-Prot
UniProt A0A8I6A243 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G6Z4_RAT UniProtKB/TrEMBL
  A6JA88_RAT UniProtKB/TrEMBL
  G6PI_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 39 of 39 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Gpi  glucose-6-phosphate isomerase  Gpi  glucose phosphate isomerase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Gpi  glucose phosphate isomerase    Glucose phosphate isomerase  Name updated 625702 APPROVED
2002-06-10 Gpi  Glucose phosphate isomerase      Symbol and Name status set to approved 70586 APPROVED