Fyn (FYN proto-oncogene, Src family tyrosine kinase) - Rat Genome Database

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Gene: Fyn (FYN proto-oncogene, Src family tyrosine kinase) Rattus norvegicus
Analyze
Symbol: Fyn
Name: FYN proto-oncogene, Src family tyrosine kinase
RGD ID: 2641
Description: Enables several functions, including phosphatidylinositol 3-kinase binding activity; protein tyrosine kinase activity; and signaling receptor binding activity. Involved in several processes, including cellular response to amino acid stimulus; negative regulation of apoptotic process; and protein phosphorylation. Located in several cellular components, including mitochondrion; perinuclear endoplasmic reticulum; and postsynaptic density. Is active in dendrite; glutamatergic synapse; and postsynaptic density, intracellular component. Biomarker of temporal lobe epilepsy. Human ortholog(s) of this gene implicated in Alzheimer's disease; alcohol dependence; and schizophrenia. Orthologous to human FYN (FYN proto-oncogene, Src family tyrosine kinase); PARTICIPATES IN altered Reelin signaling pathway; E-cadherin signaling pathway; eicosanoid signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: FYN oncogene related to SRC, FGR, YES; fyn proto-oncogene; p59-Fyn; proto-oncogene c-Fyn; proto-oncogene tyrosine-protein kinase Fyn; tyrosine-protein kinase Fyn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Fynem6Mcwi   Fynem1Mcwi  
Genetic Models: SS-Fynem6Mcwi SS-Fynem1Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82044,322,635 - 44,514,498 (+)NCBIGRCr8
mRatBN7.22042,767,733 - 42,960,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2042,766,369 - 42,959,911 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2044,517,354 - 44,708,655 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02044,176,580 - 44,367,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02044,909,156 - 45,110,016 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02044,436,354 - 44,630,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2044,436,403 - 44,630,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,160,734 - 46,353,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42043,501,853 - 43,695,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12043,524,863 - 43,718,578 (+)NCBI
Celera2043,482,980 - 43,675,123 (+)NCBICelera
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
FynRatalcohol dependence susceptibilityISOFYN (Homo sapiens)408345238DNA:SNP:5'utr: -93A>G (rs45490695) (human)RGD 
FynRatalcohol dependence severityISOFYN (Homo sapiens)408345249DNA:SNP:5'utr: T137346C (human)RGD 
FynRatAlzheimer's disease  ISOFYN (Homo sapiens)1358602protein:decreased expression:cerebral cortex and soluble fraction (human)RGD 
FynRatAlzheimer's disease  ISOFYN (Homo sapiens)1358600 RGD 
FynRatBurns  IEP 2324864protein:decreased phosphorylation and decreased activity:T cell (rat)RGD 
FynRatCocaine-Related Disorders amelioratesISOFyn (Mus musculus)408345254 RGD 
FynRatmorphine withdrawal syndrome amelioratesISOFyn (Mus musculus)597538594 RGD 
FynRatschizophrenia  ISOFYN (Homo sapiens)1358593 RGD 
FynRatSepsis  IEP 2324866protein:decreased phosphorylation and decreased activity:T cell (rat)RGD 
FynRattemporal lobe epilepsy  IEP 5147998protein:increased expression:forebrain and postsynaptic densityRGD 
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FynRatprimary ovarian insufficiency  ISOFYN (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian failureClinVarPMID:25741868
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FynRatadult T-cell leukemia/lymphoma  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26437031
FynRatCatalepsy  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16407246
FynRatExperimental Liver Cirrhosis  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
FynRatperipheral T-cell lymphoma  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24413734
FynRatpulmonary fibrosis  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30658076
FynRatStomach Neoplasms  ISOFYN (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16367923
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FynRatskin disease  ISSFyn (Mus musculus)13592920 MouseDO 
FynRatskin squamous cell carcinoma  ISSFyn (Mus musculus)13592920 MouseDO 

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FynRat(-)-epigallocatechin 3-gallate multiple interactionsISOFYN (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of FYN mRNACTDPMID:22079256
FynRat(R,R,R)-alpha-tocopherol multiple interactionsISOFYN (Homo sapiens)6480464alpha-Tocopherol inhibits the reaction [bis(2-hydroxy-2-ethylbutanoato)oxochromate(V) results in increased phosphorylation of FYN protein] and alpha-Tocopherol inhibits the reaction [Potassium Dichromate results in increased phosphorylation of FYN protein]CTDPMID:14572611
FynRat(S)-nicotine multiple interactionsISOFYN (Homo sapiens)6480464LCK protein promotes the reaction [Nicotine results in increased phosphorylation of and results in increased activity of FYN protein] and Nicotine results in increased phosphorylation of and results in increased activity of FYN proteinCTDPMID:17709503
FynRat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOFyn (Mus musculus)6480464[Caffeine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
FynRat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOFyn (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
FynRat17beta-estradiol multiple interactionsISOFYN (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of FYN mRNACTDPMID:19619570
FynRat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of FYN mRNACTDPMID:32741896
FynRat17beta-estradiol increases expressionISOFYN (Homo sapiens)6480464Estradiol results in increased expression of FYN mRNACTDPMID:19619570
FynRat17beta-estradiol decreases expressionISOFYN (Homo sapiens)6480464Estradiol results in decreased expression of FYN mRNACTDPMID:20106945
FynRat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of FYN mRNACTDPMID:32741896
FynRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOFYN (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of FYN mRNACTDPMID:19619570
FynRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of FYN mRNACTDPMID:33387578 and PMID:34747641
FynRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOFyn (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of FYN mRNACTDPMID:25975270
FynRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOFyn (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of FYN mRNACTDPMID:24680724
FynRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of FYN mRNACTDPMID:22298810
FynRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOFYN (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of FYN mRNACTDPMID:19619570
FynRat2-arachidonoylglycerol multiple interactionsEXP 6480464FYN gene mutant form inhibits the reaction [glyceryl 2-arachidonate results in increased phosphorylation of and results in increased activity of MAPK1 protein] and FYN gene mutant form inhibits the reaction [glyceryl 2-arachidonate results in increased phosphorylation of and results in increased activity of MAPK3 protein]CTDPMID:12657697
FynRat2-methylcholine affects expressionISOFYN (Homo sapiens)6480464beta-methylcholine affects the expression of FYN mRNACTDPMID:21179406
FynRat3,3',4,4',5-pentachlorobiphenyl multiple interactionsISOFYN (Homo sapiens)64804643 more ...CTDPMID:24709675
FynRat3,3',4,4',5-pentachlorobiphenyl decreases expressionISOFYN (Homo sapiens)64804643 more ...CTDPMID:24709675

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Biological Process
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FynRatactivated T cell proliferation acts_upstream_of_or_withinISOFyn (Mus musculus)1624291MGI:2179145 PMID:1516132RGDPMID:1516132
FynRatactivated T cell proliferation acts_upstream_of_or_withinIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcell differentiation involved_inIBAFB:FBgn0262733 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
FynRatcell surface receptor protein tyrosine kinase signaling pathway involved_inIBAPANTHER:PTN002521528 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
FynRatcell surface receptor signaling pathway acts_upstream_of_or_withinIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcell surface receptor signaling pathway acts_upstream_of_or_withinISOFyn (Mus musculus)1624291 PMID:9177270RGDPMID:9177270
FynRatcellular response to amyloid-beta involved_inIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcellular response to amyloid-beta involved_inISOFYN (Homo sapiens)1624291 PMID:27520374RGDPMID:27520374
FynRatcellular response to glycine involved_inIMP 13506268PMID:17526495ARUK-UCL 
FynRatcellular response to growth factor stimulus  IEP 2324869TGF-betaRGD 
FynRatcellular response to hydrogen peroxide involved_inIDA 13601987PMID:27525436ARUK-UCL 
FynRatcellular response to L-glutamate involved_inIMP 13506268PMID:17526495ARUK-UCL 
FynRatcellular response to peptide hormone stimulus  IEP 2324915prolactinRGD 
FynRatcellular response to platelet-derived growth factor stimulus acts_upstream_of_or_withinISOFyn (Mus musculus)1624291 PMID:17623777RGDPMID:17623777
FynRatcellular response to platelet-derived growth factor stimulus acts_upstream_of_or_withinIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcellular response to transforming growth factor beta stimulus acts_upstream_of_or_withinISOFyn (Mus musculus)1624291MGI:98397 more ...RGDPMID:21829547
FynRatcellular response to transforming growth factor beta stimulus acts_upstream_of_or_withinIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatdendrite morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatdendrite morphogenesis acts_upstream_of_or_withinISOFyn (Mus musculus)1624291MGI:1930480 PMID:12372285RGDPMID:12372285
FynRatdetection of mechanical stimulus involved in sensory perception of pain acts_upstream_of_or_withinISOFyn (Mus musculus)1624291MGI:1930480 PMID:16190898RGDPMID:16190898
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Cellular Component
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FynRatactin filament located_inIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatactin filament located_inISOFyn (Mus musculus)1624291 PMID:17623777RGDPMID:17623777
FynRatcell body located_inISOFyn (Mus musculus)1624291 PMID:11826099RGDPMID:11826099
FynRatcell body located_inIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcell periphery located_inISOFyn (Mus musculus)1624291 PMID:17623777RGDPMID:17623777
FynRatcell periphery located_inIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
FynRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
FynRatcytosol located_inIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatcytosol located_inISOFYN (Homo sapiens) more ...1624291 RGDGO_REF:0000052
FynRatcytosol located_inTAS 1600115Reactome:R-RNO-912619ReactomeReactome:R-RNO-912619
FynRatdendrite is_active_inISOFYN (Homo sapiens)1624291 PMID:24012003RGDPMID:24012003
FynRatdendrite is_active_inIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatdendrite located_inISOFyn (Mus musculus)1624291 PMID:20655099RGDPMID:20655099
FynRatdendrite located_inIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatdendrite is_active_inIDA 8553716PMID:24012003ARUK-UCL 
FynRatendosome located_inISOFYN (Homo sapiens)1624291 PMID:15611048RGDPMID:15611048
FynRatendosome located_inISOFyn (Mus musculus)1624291 PMID:17623777RGDPMID:17623777
FynRatendosome located_inIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatendosome located_inIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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FynRatalpha-tubulin binding enablesIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatalpha-tubulin binding enablesISOFyn (Mus musculus)1624291 PMID:11826099RGDPMID:11826099
FynRatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
FynRatATP binding enablesIEAInterPro:IPR0007191600115GO_REF:0000002InterProGO_REF:0000002
FynRatATP binding enablesIEAInterPro:IPR000719 and InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
FynRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
FynRatCD4 receptor binding  IPICd4 (Rattus norvegicus)2324896 RGD 
FynRatCD8 receptor binding  IPICd8a (Rattus norvegicus)2324896 RGD 
FynRatdisordered domain specific binding enablesIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatdisordered domain specific binding enablesISOFYN (Homo sapiens)1624291UniProtKB:P03406 and PMID:9351809RGDPMID:9351809
FynRatenzyme binding  IPICbl (Rattus norvegicus)632732 RGD 
FynRatenzyme binding enablesIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatenzyme binding enablesISOFYN (Homo sapiens)1624291UniProtKB:Q9JHI8 and PMID:27525436RGDPMID:27525436
FynRatephrin receptor binding enablesIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatephrin receptor binding enablesISOFYN (Homo sapiens)1624291UniProtKB:O09127 and PMID:10498895RGDPMID:10498895
FynRatG protein-coupled receptor binding enablesIEAUniProtKB:P39688 and ensembl:ENSMUSP000000975471600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatG protein-coupled receptor binding enablesISOFyn (Mus musculus)1624291UniProtKB:Q923Z0 and PMID:23169819RGDPMID:23169819
FynRatG protein-coupled receptor binding enablesISOFYN (Homo sapiens)1624291UniProtKB:Q9NZH0 and PMID:23169819RGDPMID:23169819
FynRatG protein-coupled receptor binding enablesIEAUniProtKB:P06241 and ensembl:ENSP000003466711600115GO_REF:0000107EnsemblGO_REF:0000107
FynRatgrowth factor receptor binding enablesISOFYN (Homo sapiens)1624291UniProtKB:P09619 and PMID:16479011RGDPMID:16479011
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RGD Manual Annotations


  

Imported Annotations - SMPDB

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FynRatFc epsilon receptor mediated signaling pathway  ISOFYN (Homo sapiens)10402751 SMPDBSMP:00358

Imported Annotations - KEGG (archival)

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FynRatFc epsilon receptor mediated signaling pathway  IEA 6907045 KEGGrno:04664
FynRatmeasles pathway  IEA 6907045 KEGGrno:05162
FynRatmyocarditis pathway  IEA 6907045 KEGGrno:05416
FynRatprion disease pathway  IEA 6907045 KEGGrno:05020
FynRatT cell receptor signaling pathway  IEA 6907045 KEGGrno:04660

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Reference Title
Reference Citation
1. Prolactin induced tyrosine phosphorylation of p59fyn may mediate phosphatidylinositol 3-kinase activation in Nb2 cells. al-Sakkaf KA, etal., J Mol Endocrinol. 1997 Dec;19(3):347-50.
2. Association of Src-like protein tyrosine kinases with the CD2 cell surface molecule in rat T lymphocytes and natural killer cells. Bell GM, etal., Mol Cell Biol. 1992 Dec;12(12):5548-54.
3. Molecular associations between the T-lymphocyte antigen receptor complex and the surface antigens CD2, CD4, or CD8 and CD5. Beyers AD, etal., Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):2945-9.
4. Phosphatidylinositol 3-kinase interacts with the adaptor protein Dab1 in response to Reelin signaling and is required for normal cortical lamination. Bock HH, etal., J Biol Chem 2003 Oct 3;278(40):38772-9. Epub 2003 Jul 25.
5. Physical association of the cytoplasmic domain of CD2 with the tyrosine kinases p56lck and p59fyn. Carmo AM, etal., Eur J Immunol. 1993 Sep;23(9):2196-201.
6. Tyrosine kinase and tyrosine phosphatase participate in regulation of interactions of NMDA receptor subunit 2A with Src and Fyn mediated by PSD-95 after transient brain ischemia. Chen M, etal., Neurosci Lett. 2003 Mar 13;339(1):29-32.
7. Activation of RBL-2H3 mast cells is dependent on tyrosine phosphorylation of phospholipase D2 by Fyn and Fgr. Choi WS, etal., Mol Cell Biol 2004 Aug;24(16):6980-92.
8. Prostaglandin E2 modulation of p59fyn tyrosine kinase in T lymphocytes during sepsis. Choudhry MA, etal., J Immunol. 1998 Jan 15;160(2):929-35.
9. TGF-beta abrogates TCR-mediated signaling by upregulating tyrosine phosphatases in T cells. Choudhry MA, etal., Shock. 2001 Mar;15(3):193-9.
10. Role of NFAT and AP-1 in PGE2-mediated T cell suppression in burn injury. Choudhry MA, etal., Shock. 2002 Sep;18(3):212-6.
11. Identification of a novel protein complex containing annexin VI, Fyn, Pyk2, and the p120(GAP) C2 domain. Chow A, etal., FEBS Lett. 2000 Mar 3;469(1):88-92.
12. The protein tyrosine kinase P59fyn is associated with prolactin (PRL) receptor and is activated by PRL stimulation of T-lymphocytes. Clevenger CV and Medaglia MV, Mol Endocrinol. 1994 Jun;8(6):674-81.
13. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
15. Impaired long-term potentiation, spatial learning, and hippocampal development in fyn mutant mice. Grant SG, etal., Science 1992 Dec 18;258(5090):1903-10.
16. Altered p59Fyn kinase expression accompanies disease progression in Alzheimer's disease: implications for its functional role. Ho GJ, etal., Neurobiol Aging 2005 May;26(5):625-35.
17. Vascular endothelial growth factor receptor-2: structure, function, intracellular signalling and therapeutic inhibition. Holmes K, etal., Cell Signal. 2007 Oct;19(10):2003-12. Epub 2007 Jun 12.
18. Activation of NMDA receptors and L-type voltage-gated calcium channels mediates enhanced formation of Fyn-PSD95-NR2A complex after transient brain ischemia. Hou XY, etal., Brain Res 2002 Nov 15;955(1-2):123-32.
19. Effects of pentoxyfylline on mesenteric lymph node T-cells in a rat model of thermal injury. Kotadia BK, etal., Shock. 2003 Dec;20(6):517-20.
20. Phosphorylation of tau by fyn: implications for Alzheimer's disease. Lee G, etal., J Neurosci 2004 Mar 3;24(9):2304-12.
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PMID:1381360   PMID:1516132   PMID:2062320   PMID:7722293   PMID:8175795   PMID:8196616   PMID:8402898   PMID:8761480   PMID:9177270   PMID:9351809   PMID:9381182   PMID:9799234  
PMID:9892651   PMID:10366594   PMID:10498895   PMID:10861086   PMID:10872802   PMID:11110698   PMID:11181827   PMID:11448999   PMID:11826099   PMID:12150984   PMID:12372285   PMID:12538589  
PMID:12681493   PMID:12923167   PMID:14531861   PMID:14697322   PMID:14741357   PMID:14993658   PMID:15073522   PMID:15579503   PMID:15611048   PMID:16162939   PMID:16190898   PMID:16479011  
PMID:16709819   PMID:16841086   PMID:16860569   PMID:16921024   PMID:16979591   PMID:17462920   PMID:17623777   PMID:17923684   PMID:18089558   PMID:18354028   PMID:18682436   PMID:18697750  
PMID:18701695   PMID:18922801   PMID:19109931   PMID:19115405   PMID:19166962   PMID:19178193   PMID:19441121   PMID:19625508   PMID:19652227   PMID:19816407   PMID:19888448   PMID:20142099  
PMID:20569495   PMID:20655099   PMID:20978343   PMID:21829547   PMID:22057277   PMID:22433866   PMID:22437915   PMID:22802969   PMID:22833681   PMID:23169819   PMID:23386614   PMID:23438599  
PMID:23962429   PMID:24003228   PMID:24173619   PMID:24627473   PMID:24675471   PMID:25106729   PMID:25156556   PMID:25289695   PMID:25340851   PMID:25565773   PMID:25951993   PMID:26277342  
PMID:26449489   PMID:26777117   PMID:26901312   PMID:27001024   PMID:27520374   PMID:27692963   PMID:27926876   PMID:28497343   PMID:28948209   PMID:30129387   PMID:31840160   PMID:31852295  
PMID:32145272   PMID:32929078   PMID:33409551  



Fyn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82044,322,635 - 44,514,498 (+)NCBIGRCr8
mRatBN7.22042,767,733 - 42,960,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2042,766,369 - 42,959,911 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2044,517,354 - 44,708,655 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02044,176,580 - 44,367,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02044,909,156 - 45,110,016 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02044,436,354 - 44,630,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2044,436,403 - 44,630,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,160,734 - 46,353,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42043,501,853 - 43,695,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12043,524,863 - 43,718,578 (+)NCBI
Celera2043,482,980 - 43,675,123 (+)NCBICelera
Cytogenetic Map20q12NCBI
FYN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386111,660,332 - 111,873,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6111,660,332 - 111,873,452 (-)EnsemblGRCh38hg38GRCh38
GRCh376111,981,535 - 112,194,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366112,089,178 - 112,301,320 (-)NCBINCBI36Build 36hg18NCBI36
Build 346112,089,179 - 112,186,978NCBI
Celera6112,729,071 - 112,941,209 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6109,554,123 - 109,767,060 (-)NCBIHuRef
CHM1_16112,244,349 - 112,457,405 (-)NCBICHM1_1
T2T-CHM13v2.06112,843,350 - 113,056,537 (-)NCBIT2T-CHM13v2.0
Fyn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391039,245,735 - 39,441,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1039,244,851 - 39,441,377 (+)EnsemblGRCm39 Ensembl
GRCm381039,369,743 - 39,565,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1039,368,855 - 39,565,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371039,089,605 - 39,285,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361039,059,502 - 39,254,797 (+)NCBIMGSCv36mm8
Celera1040,254,667 - 40,450,960 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1020.51NCBI
Fyn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541136,401,842 - 36,512,054 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541136,403,156 - 36,597,660 (-)NCBIChiLan1.0ChiLan1.0
FYN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25131,675,357 - 131,889,692 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16129,561,361 - 129,775,652 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06109,469,750 - 109,684,086 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16113,545,944 - 113,732,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6113,545,944 - 113,604,451 (-)Ensemblpanpan1.1panPan2
FYN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11268,105,060 - 68,316,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1268,075,184 - 68,316,541 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1267,924,675 - 68,136,151 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01268,986,784 - 69,198,525 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,987,778 - 69,174,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11268,338,226 - 68,549,311 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01268,184,783 - 68,396,306 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01268,510,644 - 68,722,405 (-)NCBIUU_Cfam_GSD_1.0
Fyn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946103,155,533 - 103,356,140 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936679387,387 - 443,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936679388,500 - 588,518 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FYN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,585,439 - 77,810,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,584,675 - 77,810,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,249,062 - 87,253,260 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2187,146,809 - 87,191,215 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1p13NCBI
FYN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11361,988,265 - 62,218,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1362,159,874 - 62,219,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604034,319,593 - 34,528,593 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fyn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624933389,627 - 456,520 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624933248,298 - 456,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Fyn
1377 total Variants

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:81
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000000733
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat

1 to 10 of 14 rows
D20Rat55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,886,819 - 42,887,012 (+)MAPPERmRatBN7.2
Rnor_6.02044,555,562 - 44,555,754NCBIRnor6.0
Rnor_5.02046,279,994 - 46,280,186UniSTSRnor5.0
RGSC_v3.42043,622,153 - 43,622,346RGDRGSC3.4
RGSC_v3.42043,622,154 - 43,622,346UniSTSRGSC3.4
RGSC_v3.12043,645,165 - 43,645,357RGD
Celera2043,601,937 - 43,602,129UniSTS
RH 3.4 Map20456.5RGD
RH 3.4 Map20456.5UniSTS
RH 2.0 Map20505.7RGD
SHRSP x BN Map2034.4RGD
Cytogenetic Map20q13UniSTS
RH137616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,953,267 - 42,953,470 (+)MAPPERmRatBN7.2
Rnor_6.02044,622,917 - 44,623,119NCBIRnor6.0
Rnor_5.02046,346,156 - 46,346,358UniSTSRnor5.0
RGSC_v3.42043,690,007 - 43,690,209UniSTSRGSC3.4
Celera2043,668,270 - 43,668,472UniSTS
Cytogenetic Map20q13UniSTS
BE113818  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,929,193 - 42,929,354 (+)MAPPERmRatBN7.2
Rnor_6.02044,599,140 - 44,599,300NCBIRnor6.0
Rnor_5.02046,322,955 - 46,323,115UniSTSRnor5.0
RGSC_v3.42043,665,213 - 43,665,373UniSTSRGSC3.4
RH 3.4 Map20464.21UniSTS
Cytogenetic Map20q13UniSTS
BF405827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,813,674 - 42,813,840 (+)MAPPERmRatBN7.2
Rnor_6.02044,482,223 - 44,482,388NCBIRnor6.0
Rnor_5.02046,206,603 - 46,206,768UniSTSRnor5.0
RGSC_v3.42043,547,466 - 43,547,631UniSTSRGSC3.4
Celera2043,528,623 - 43,528,788UniSTS
RH 3.4 Map20452.8UniSTS
Cytogenetic Map20q13UniSTS
FYN_1578  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,959,298 - 42,959,937 (+)MAPPERmRatBN7.2
Rnor_6.02044,628,711 - 44,629,349NCBIRnor6.0
Rnor_5.02046,351,851 - 46,352,489UniSTSRnor5.0
RGSC_v3.42043,695,391 - 43,696,029UniSTSRGSC3.4
Celera2043,674,947 - 43,675,585UniSTS
Cytogenetic Map20q13UniSTS


This gene Fyn is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000000733   ⟹   ENSRNOP00000000733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2042,792,180 - 42,959,911 (+)Ensembl
Rnor_6.0 Ensembl2044,436,403 - 44,630,317 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075922   ⟹   ENSRNOP00000068462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2042,910,988 - 42,959,475 (+)Ensembl
Rnor_6.0 Ensembl2044,580,632 - 44,596,045 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076859   ⟹   ENSRNOP00000068458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2042,792,180 - 42,959,833 (+)Ensembl
Rnor_6.0 Ensembl2044,436,408 - 44,629,323 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085987   ⟹   ENSRNOP00000072210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2042,792,180 - 42,959,911 (+)Ensembl
Rnor_6.0 Ensembl2044,521,279 - 44,630,294 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118910   ⟹   ENSRNOP00000088889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2042,766,369 - 42,959,911 (+)Ensembl
RefSeq Acc Id: NM_012755   ⟹   NP_036887
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,322,664 - 44,514,062 (+)NCBI
mRatBN7.22042,768,059 - 42,959,475 (+)NCBI
Rnor_6.02044,436,680 - 44,628,887 (+)NCBI
Rnor_5.02046,160,734 - 46,353,456 (+)NCBI
RGSC_v3.42043,501,853 - 43,695,567 (+)RGD
Celera2043,482,980 - 43,675,123 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256522   ⟹   XP_006256584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,322,635 - 44,514,498 (+)NCBI
mRatBN7.22042,767,733 - 42,960,903 (+)NCBI
Rnor_6.02044,436,354 - 44,630,316 (+)NCBI
Rnor_5.02046,160,734 - 46,353,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601549   ⟹   XP_017457038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,322,635 - 44,514,498 (+)NCBI
mRatBN7.22042,767,733 - 42,960,903 (+)NCBI
Rnor_6.02044,577,312 - 44,630,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098436   ⟹   XP_038954364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,322,675 - 44,514,498 (+)NCBI
mRatBN7.22042,767,733 - 42,960,903 (+)NCBI
RefSeq Acc Id: NP_036887   ⟸   NM_012755
- UniProtKB: Q62844 (UniProtKB/Swiss-Prot),   A0A096MKC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256584   ⟸   XM_006256522
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A612 (UniProtKB/TrEMBL),   A0A096MKC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457038   ⟸   XM_017601549
- Peptide Label: isoform X2
- UniProtKB: A0A096MKC1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000733   ⟸   ENSRNOT00000000733
Ensembl Acc Id: ENSRNOP00000068462   ⟸   ENSRNOT00000075922
Protein kinase   SH2   SH3

Name Modeler Protein Id AA Range Protein Structure
AF-Q62844-F1-model_v2 AlphaFold Q62844 1-537 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701650
Promoter ID:EPDNEW_R12174
Type:initiation region
Name:Fyn_1
Description:FYN proto-oncogene, Src family tyrosine kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02044,436,397 - 44,436,457EPDNEW


1 to 40 of 54 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-3474 BioCyc
Ensembl Genes ENSRNOG00000000596 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000733 ENTREZGENE
  ENSRNOT00000000733.5 UniProtKB/Swiss-Prot
  ENSRNOT00000076859 ENTREZGENE
  ENSRNOT00000085987 ENTREZGENE
  ENSRNOT00000118910 ENTREZGENE
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro Fyn/Yrk_SH2 UniProtKB/Swiss-Prot
  Fyn/Yrk_SH3 UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Non-receptor_tyrosine_kinases UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  Tyr_kinase_AS UniProtKB/Swiss-Prot
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot
KEGG Report rno:25150 UniProtKB/Swiss-Prot
NCBI Gene 25150 ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE UniProtKB/Swiss-Prot
Pfam Pkinase_Tyr UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH3_1 UniProtKB/Swiss-Prot
PhenoGen Fyn PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
  SH3DOMAIN UniProtKB/Swiss-Prot
  TYRKINASE UniProtKB/Swiss-Prot
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000596 RatGTEx
1 to 40 of 54 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Fyn  FYN oncogene related to SRC, FGR, YES  Fyn  fyn proto-oncogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Fyn  Fyn proto-oncogene      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_physical_interaction coexpressed with and binds to Cbl protein in the cerebellum 632732