Cebpa (CCAAT/enhancer binding protein alpha) - Rat Genome Database

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Gene: Cebpa (CCAAT/enhancer binding protein alpha) Rattus norvegicus
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Symbol: Cebpa
Name: CCAAT/enhancer binding protein alpha
RGD ID: 2326
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; HMG box domain binding activity; and protein dimerization activity. Contributes to sequence-specific DNA binding activity. Involved in several processes, including osteoblast development; positive regulation of fat cell differentiation; and regulation of transcription by RNA polymerase II. Located in nuclear matrix and nucleolus. Part of CHOP-C/EBP complex and Rb-E2F complex. Biomarker of transient cerebral ischemia. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CEBPA (CCAAT enhancer binding protein alpha); PARTICIPATES IN forkhead class A signaling pathway; acute myeloid leukemia pathway; INTERACTS WITH (+)-pilocarpine; (-)-cotinine; (S)-nicotine.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: C/EBP alpha; CAAT/enhancer-binding protein DNA-binding protein; CAAT/enhancer-binding protein, DNA-binding protein; CCAAT/enhancer binding protein (C/EBP) alpha; CCAAT/enhancer binding protein (C/EBP), alpha; CCAAT/enhancer binding protein, alpha; CCAAT/enhancer-binding protein alpha; DBPCEP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,896,584 - 96,899,256 (+)NCBIGRCr8
mRatBN7.2187,759,631 - 87,762,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,759,433 - 87,762,412 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,165,821 - 93,168,493 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,631,805 - 101,634,477 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,924,121 - 94,926,793 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,363,492 - 91,366,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,363,492 - 91,366,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,493,857 - 92,495,245 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,626,111 - 87,627,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,704,351 - 87,705,428 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
CebpaRatAcute-Phase Reaction  IEP 1625368 RGD 
CebpaRatAlzheimer's disease  ISOCEBPA (Homo sapiens)10401224mRNA:increased expression:hippocampus (human)RGD 
CebpaRatAlzheimer's disease  ISOCebpa (Mus musculus)10401190protein:decreased expression:forebrain and hindbrain (mouse)RGD 
CebpaRatBrain Injuries  ISOCebpa (Mus musculus)10401206mRNA and protein:increased expression:cerebral cortex (mouse)RGD 
CebpaRatCOVID-19  ISOCEBPA (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
CebpaRatDiseases of the Aged  ISOCEBPA (Homo sapiens)9068941mRNA:increased expression:hippocampus (human)RGDPMID:14769913 and REF_RGD_ID:10401224
CebpaRatHuntington's disease  ISOCebpa (Mus musculus)10401191protein:altered localization:liver (mouse)RGD 
CebpaRatHuntington's disease treatmentISOCebpa (Mus musculus)6484269 RGD 
CebpaRatMetabolic Bone Diseases  ISOCebpa (Mus musculus)10401269protein:increased expression:thigh bone (mouse)RGD 
CebpaRatosteopetrosis  ISOCebpa (Mus musculus)10401187 RGD 
CebpaRatprion disease  ISOCebpa (Mus musculus)10401270mRNA more ...RGD 
CebpaRatSarcopenia  ISOCebpa (Mus musculus)10401269protein:increased expression:thigh muscle (mouse)RGD 
CebpaRattransient cerebral ischemia  IEP 10401192mRNA and protein:increased expression:hippocampal pyramidal cell layer (rat)RGD 
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CebpaRatacute myeloid leukemia  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18987666 more ...
CebpaRatacute promyelocytic leukemia  ISOCEBPA (Homo sapiens)11554173CTD more ...CTDPMID:16788101 and PMID:26285909
CebpaRatEmphysema  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:29078374
CebpaRatFemale Infertility  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21177758
CebpaRatHead and Neck Neoplasms  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17510391
CebpaRathepatocellular carcinoma  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16288022 and PMID:21785164
CebpaRatobesity  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28242765
CebpaRatpre-eclampsia  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:34398343
CebpaRatpre-malignant neoplasm  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21785164
CebpaRatpulmonary fibrosis  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:29078374
CebpaRatRadiation-Induced Neoplasms  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21346772
CebpaRatSkin Neoplasms  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21346772
CebpaRatsquamous cell carcinoma  ISOCEBPA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17510391 and PMID:21346772
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CebpaRatacute myeloid leukemia  ISSCebpa (Mus musculus)13592920OMIM:601626MouseDO 
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CebpaRatacute myeloid leukemia  ISOCEBPA (Homo sapiens)7240710 OMIM 

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CebpaRat(+)-artemisinic acid decreases expressionISOCEBPA (Homo sapiens)6480464[artemisic acid results in decreased expression of CEBPA mRNA] which results in decreased expression of HMGCR mRNA and artemisic acid results in decreased expression of CEBPA mRNACTDPMID:23063590
CebpaRat(+)-artemisinic acid multiple interactionsISOCEBPA (Homo sapiens)6480464[[artemisic acid results in decreased expression of CEBPA mRNA] which results in decreased expression of HMGCR mRNA] which results in decreased chemical synthesis of CholesterolCTDPMID:23063590
CebpaRat(+)-pilocarpine multiple interactionsEXP 6480464[Lithium Chloride co-treated with Pilocarpine] affects the reaction [Dexamethasone results in increased expression of CEBPA mRNA]CTDPMID:32494933
CebpaRat(-)-cotinine multiple interactionsEXP 6480464[Nicotine results in increased abundance of Cotinine] which results in increased expression of CEBPA proteinCTDPMID:29617909
CebpaRat(-)-epigallocatechin 3-gallate multiple interactionsISOCebpa (Mus musculus)6480464epigallocatechin gallate inhibits the reaction [Carbon Tetrachloride results in decreased expression of CEBPA protein]CTDPMID:20438794
CebpaRat(1->4)-beta-D-glucan multiple interactionsISOCebpa (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CEBPA mRNACTDPMID:36331819
CebpaRat(S)-nicotine multiple interactionsEXP 6480464[Nicotine results in increased abundance of Cotinine] which results in increased expression of CEBPA proteinCTDPMID:29617909
CebpaRat(S)-nicotine affects expressionEXP 6480464Nicotine affects the expression of CEBPA mRNACTDPMID:31972234
CebpaRat(S)-nicotine increases expressionISOCebpa (Mus musculus)6480464Nicotine results in increased expression of CEBPA mRNACTDPMID:31622651
CebpaRat1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane multiple interactionsEXP 64804642 more ...CTDPMID:19414516
CebpaRat1,2-dimethylhydrazine multiple interactionsISOCebpa (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of CEBPA mRNA]CTDPMID:22206623
CebpaRat1,2-dimethylhydrazine increases expressionISOCebpa (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CEBPA mRNACTDPMID:22206623
CebpaRat1-nitropyrene multiple interactionsISOCEBPA (Homo sapiens)6480464[Taurine co-treated with 3-methyladenine] inhibits the reaction [1-nitropyrene results in decreased expression of CEBPA mRNA] and CEBPA protein inhibits the reaction [1-nitropyrene results in increased expression of ATG7 protein]CTDPMID:29078374
CebpaRat1-nitropyrene decreases expressionISOCEBPA (Homo sapiens)64804641-nitropyrene results in decreased expression of CEBPA mRNACTDPMID:29078374
CebpaRat15-deoxy-Delta(12,14)-prostaglandin J2 increases expressionISOCebpa (Mus musculus)648046415-deoxy-delta(12 and 14)-prostaglandin J2 results in increased expression of CEBPA mRNACTDPMID:12021203
CebpaRat17alpha-ethynylestradiol decreases activityEXP 6480464Ethinyl Estradiol results in decreased activity of CEBPA proteinCTDPMID:12507762
CebpaRat17beta-estradiol affects expressionISOCebpa (Mus musculus)6480464Estradiol affects the expression of CEBPA mRNACTDPMID:15598610
CebpaRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CEBPA mRNACTDPMID:32145629 and PMID:35192832
CebpaRat17beta-estradiol increases expressionISOCebpa (Mus musculus)6480464Estradiol results in increased expression of CEBPA mRNACTDPMID:39298647
CebpaRat17beta-estradiol multiple interactionsISOCEBPA (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of CEBPA mRNACTDPMID:30165855

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Biological Process
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CebpaRatacute-phase response  IEP 1625368 RGD 
CebpaRatanimal organ regeneration  IEP 1625362 RGD 
CebpaRatbrown fat cell differentiation acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291 PMID:18492766RGDPMID:18492766
CebpaRatbrown fat cell differentiation acts_upstream_of_or_withinIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatcell differentiation  IEP 1625363 RGD 
CebpaRatcell population proliferation acts_upstream_ofIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatcell population proliferation acts_upstream_ofISOCebpa (Mus musculus)1624291MGI:2177135 PMID:15073037RGDPMID:15073037
CebpaRatcellular response to lithium ion acts_upstream_of_or_withinIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatcellular response to lithium ion acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291 PMID:15673614RGDPMID:15673614
CebpaRatcellular response to tumor necrosis factor acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291 PMID:1618860RGDPMID:1618860
CebpaRatcellular response to tumor necrosis factor acts_upstream_of_or_withinIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatcellular response to xenobiotic stimulus  IEP 69946rosiglitazoneRGD 
CebpaRatcholesterol metabolic process acts_upstream_of_or_withinIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatcholesterol metabolic process acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291MGI:3848341 PMID:18974039RGDPMID:18974039
CebpaRatDNA-templated transcription involved_inIEAInterPro:IPR0311061600115GO_REF:0000002InterProGO_REF:0000002
CebpaRatembryonic placenta development acts_upstream_of_or_withinIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatembryonic placenta development acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291MGI:88373 PMID:15509779RGDPMID:15509779
CebpaRatenergy homeostasis acts_upstream_of_or_withinISOCebpa (Mus musculus)1624291 PMID:36977414RGDPMID:36977414
CebpaRatenergy homeostasis involved_inIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatenergy homeostasis involved_inISOCebpa (Mus musculus)1624291 PMID:36977414RGDPMID:36977414
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Cellular Component
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CebpaRatC/EBP complex part_ofISOComplexPortal:CPX-711600115GO_REF:0000114ComplexPortalGO_REF:0000114
CebpaRatC/EBP complex part_ofIEAUniProtKB:P49715 and ensembl:ENSP000004275141600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatC/EBP complex part_ofISOCEBPA (Homo sapiens)1624291 PMID:20102225RGDPMID:20102225
CebpaRatCHOP-C/EBP complex part_ofIPI 1599740PMID:8657121ComplexPortal 
CebpaRatCHOP-C/EBP complex part_ofIEAUniProtKB:P49715 and ensembl:ENSP000004275141600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatCHOP-C/EBP complex part_ofIPIUniProtKB:Q628571599740PMID:8657121ParkinsonsUK-UCL 
CebpaRatCHOP-C/EBP complex part_ofISOCEBPA (Homo sapiens)1624291 PMID:20102225RGDPMID:20102225
CebpaRatintracellular membrane-bounded organelle located_inISOCEBPA (Homo sapiens) and UniProtKB:P49715-11624291 RGDGO_REF:0000052
CebpaRatintracellular membrane-bounded organelle located_inIEAUniProtKB:P49715 and ensembl:ENSP000004275141600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatnuclear matrix  IDA 1625368 RGD 
CebpaRatnucleolus located_inISOCEBPA (Homo sapiens) and UniProtKB:P49715-41624291 PMID:20075868RGDPMID:20075868
CebpaRatnucleolus located_inIEAUniProtKB-SubCell:SL-01881600115GO_REF:0000044UniProtGO_REF:0000044
CebpaRatnucleolus located_inIDA 10047291PMID:20075868UniProt 
CebpaRatnucleoplasm located_inISOCEBPA (Homo sapiens) and UniProtKB:P49715-11624291 RGDGO_REF:0000052
CebpaRatnucleoplasm located_inIEAUniProtKB:P49715 and ensembl:ENSP000004275141600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatnucleus located_inISOCEBPA (Homo sapiens)1624291 PMID:11242107RGDPMID:11242107
CebpaRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
CebpaRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
CebpaRatnucleus located_inNAS 1599740PMID:8657121ComplexPortal 
CebpaRatnucleus located_inISOCebpa (Mus musculus)1624291 PMID:11672531 more ...RGDPMID:11672531 more ...
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Molecular Function
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CebpaRatchromatin binding enablesIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatchromatin binding enablesISOCebpa (Mus musculus)1624291 PMID:22780989RGDPMID:22780989
CebpaRatchromatin DNA binding enablesISOCebpa (Mus musculus)1624291 PMID:25921091RGDPMID:25921091
CebpaRatchromatin DNA binding enablesIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatDNA binding  IDA 727708 RGD 
CebpaRatDNA binding  IDA 1304357 RGD 
CebpaRatDNA binding  IDA 1304355 RGD 
CebpaRatDNA binding enablesIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
CebpaRatDNA binding enablesISOCebpa (Mus musculus)1624291 PMID:10510303 more ...RGDPMID:10510303 more ...
CebpaRatDNA binding enablesIDA 10047356PMID:8367486UniProt 
CebpaRatDNA binding enablesIDA 69946PMID:1377818UniProt 
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOCEBPA (Homo sapiens)1624291 PMID:16946298RGDPMID:16946298
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:P53566 and ensembl:ENSMUSP000000961291600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:P49715 and ensembl:ENSP000004275141600115GO_REF:0000107EnsemblGO_REF:0000107
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIDA 8661634PMID:8572170NTNU_SB 
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISSUniProtKB:P535661600115GO_REF:0000024UniProtGO_REF:0000024
CebpaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOCebpa (Mus musculus)1624291 PMID:10233885 more ...RGDPMID:10233885 more ...
CebpaRatDNA-binding transcription factor activity enablesISOCEBPA (Homo sapiens)1624291 PMID:11242107 more ...RGDPMID:11242107 more ...
CebpaRatDNA-binding transcription factor activity enablesIEAInterPro:IPR004827 more ...1600115GO_REF:0000002InterProGO_REF:0000002
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Imported Annotations - KEGG (archival)

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CebpaRatacute myeloid leukemia pathway  IEA 6907045 KEGGrno:05221

Imported Annotations - PID (archival)

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CebpaRatforkhead class A signaling pathway  ISOCEBPA (Homo sapiens)6484113 PIDPID:200087
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CebpaRatabnormal lipid level  IDA 704418 RGD 

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#
Reference Title
Reference Citation
1. Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Blalock EM, etal., Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):2173-8. Epub 2004 Feb 9.
2. Transthyretin: A key gene involved in the maintenance of memory capacities during aging. Brouillette J and Quirion R, Neurobiol Aging. 2007 May 16.
3. Hepatic CCAAT/enhancer binding protein (C/EBP-alpha and C/EBP-beta) expression changes with riboflavin deficiency, diet restriction and starvation in rats. Chapin RB, etal., J Nutr. 1994 Dec;124(12):2365-75.
4. C/EBPalpha regulates osteoclast lineage commitment. Chen W, etal., Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7294-9. doi: 10.1073/pnas.1211383110. Epub 2013 Apr 11.
5. The dysfunction of hepatic transcriptional factors in mice with Huntington's Disease. Chiang MC, etal., Biochim Biophys Acta. 2011 Sep;1812(9):1111-20. Epub 2011 May 30.
6. Dysregulation of C/EBPalpha by mutant Huntingtin causes the urea cycle deficiency in Huntington's disease. Chiang MC, etal., Hum Mol Genet. 2007 Mar 1;16(5):483-98. Epub 2007 Jan 9.
7. C/EBPalpha regulates hepatic transcription of hepcidin, an antimicrobial peptide and regulator of iron metabolism. Cross-talk between C/EBP pathway and iron metabolism. Courselaud B, etal., J Biol Chem 2002 Oct 25;277(43):41163-70.
8. C/EBP alpha and C/EBP beta regulate haptoglobin gene expression during rat liver development and the acute-phase response. Dinic S, etal., Mol Biol Rep. 2005 Sep;32(3):141-7.
9. A PIT-1 homeodomain mutant blocks the intranuclear recruitment of the CCAAT/enhancer binding protein alpha required for prolactin gene transcription. Enwright JF 3rd, etal., Mol Endocrinol 2003 Feb;17(2):209-22.
10. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
12. Regulation of microglial proliferation during chronic neurodegeneration. Gomez-Nicola D, etal., J Neurosci. 2013 Feb 6;33(6):2481-93. doi: 10.1523/JNEUROSCI.4440-12.2013.
13. Functional interaction of bZIP proteins and the large subunit of replication factor C in liver and adipose cells. Hong S, etal., J Biol Chem. 2001 Jul 27;276(30):28098-105. Epub 2001 May 16.
14. Role of C/EBP proteins in hepatic and vascular smooth muscle transcription of human NHE1 gene. Kolyada AY, etal., Am J Physiol. 1995 Dec;269(6 Pt 1):C1408-16.
15. Isolation of a recombinant copy of the gene encoding C/EBP. Landschulz WH, etal., Genes Dev 1988 Jul;2(7):786-800.
16. A revised sequence of the rat c/ebp gene. Lincoln AJ, etal., Genes Dev 1994 May 1;8(9):1131-2.
17. Keratinocyte growth factor and the transcription factors C/EBP alpha, C/EBP delta, and SREBP-1c regulate fatty acid synthesis in alveolar type II cells. Mason RJ, etal., J Clin Invest 2003 Jul;112(2):244-55.
18. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
19. Structural basis for DNA recognition by the basic region leucine zipper transcription factor CCAAT/enhancer-binding protein alpha. Miller M, etal., J Biol Chem 2003 Apr 25;278(17):15178-84. Epub 2003 Feb 10.
20. Nucleolar retention of a translational C/EBPalpha isoform stimulates rDNA transcription and cell size. Muller C, etal., EMBO J. 2010 Mar 3;29(5):897-909. doi: 10.1038/emboj.2009.404. Epub 2010 Jan 14.
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PMID:1618860   PMID:1935900   PMID:7959007   PMID:8798745   PMID:9372966   PMID:9545285   PMID:10075730   PMID:10233885   PMID:10510303   PMID:10859308   PMID:10921906   PMID:10937998  
PMID:11242107   PMID:11940593   PMID:12006103   PMID:12037571   PMID:12055200   PMID:12502791   PMID:12695546   PMID:12821655   PMID:12861022   PMID:12896875   PMID:14660596   PMID:15073037  
PMID:15107404   PMID:15130516   PMID:15175325   PMID:15504357   PMID:15509779   PMID:15519652   PMID:15589173   PMID:15632071   PMID:15664994   PMID:15673614   PMID:16407263   PMID:16445384  
PMID:16467360   PMID:16600022   PMID:16774685   PMID:16893891   PMID:16912278   PMID:16946298   PMID:17021047   PMID:17090532   PMID:17097562   PMID:17290224   PMID:17966466   PMID:18026136  
PMID:18328085   PMID:18492766   PMID:18632661   PMID:18824566   PMID:18949049   PMID:18974039   PMID:19168033   PMID:19932685   PMID:20219337   PMID:20972335   PMID:21131957   PMID:21227534  
PMID:21249617   PMID:21454593   PMID:21539866   PMID:21669876   PMID:21795542   PMID:21996045   PMID:22780989   PMID:22985399   PMID:23392382   PMID:23508841   PMID:23881867   PMID:23937658  
PMID:23993269   PMID:24429361   PMID:24913911   PMID:25446530   PMID:27746211   PMID:28186500   PMID:28902364   PMID:32363643   PMID:32814091   PMID:34217716   PMID:35883192   PMID:36132983  
PMID:37361037   PMID:37392202  



Cebpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,896,584 - 96,899,256 (+)NCBIGRCr8
mRatBN7.2187,759,631 - 87,762,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,759,433 - 87,762,412 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,165,821 - 93,168,493 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,631,805 - 101,634,477 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,924,121 - 94,926,793 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,363,492 - 91,366,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,363,492 - 91,366,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,493,857 - 92,495,245 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,626,111 - 87,627,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,704,351 - 87,705,428 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBICelera
Cytogenetic Map1q21NCBI
CEBPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,299,934 - 33,302,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,299,934 - 33,302,534 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,790,840 - 33,793,440 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,482,776 - 38,485,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 341938,482,775 - 38,485,160NCBI
Celera1930,484,405 - 30,486,995 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,291,676 - 30,294,205 (-)NCBIHuRef
CHM1_11933,791,795 - 33,794,385 (-)NCBICHM1_1
T2T-CHM13v2.01935,819,706 - 35,822,306 (-)NCBIT2T-CHM13v2.0
Cebpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,818,718 - 34,821,353 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,818,718 - 34,821,353 (+)EnsemblGRCm39 Ensembl
GRCm38735,119,293 - 35,121,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,119,293 - 35,121,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv37735,904,312 - 35,906,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,828,063 - 34,830,688 (+)NCBIMGSCv36mm8
Celera730,255,122 - 30,257,756 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.02NCBI
Cebpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,047,931 - 3,049,080 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,046,544 - 3,049,217 (-)NCBIChiLan1.0ChiLan1.0
CEBPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,273,129 - 39,275,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,273,099 - 41,275,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,223,567 - 30,226,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,969,065 - 38,971,031 (-)NCBIpanpan1.1PanPan1.1panPan2
CEBPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,846,252 - 118,851,045 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,249,214 - 118,251,848 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,446,691 - 119,449,313 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11119,007,283 - 119,009,910 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,633,880 - 118,636,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,692,609 - 119,695,231 (+)NCBIUU_Cfam_GSD_1.0
Cebpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,129,664 - 9,132,348 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365702,513,561 - 2,516,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,083,207 - 43,085,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,083,200 - 43,085,884 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,632,195 - 38,634,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,342,506 - 28,345,759 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,343,907 - 28,344,977 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660736,065,215 - 6,067,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247949,809,007 - 9,813,418 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cebpa
11 total Variants

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:44
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000014517
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 39 rows
D1Rat410  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8196,895,582 - 96,895,734 (+)Marker Load Pipeline
mRatBN7.2187,758,629 - 87,758,781 (+)MAPPERmRatBN7.2
Rnor_6.0191,362,491 - 91,362,642NCBIRnor6.0
Rnor_5.0192,492,865 - 92,493,016UniSTSRnor5.0
RGSC_v3.4187,625,119 - 87,625,270UniSTSRGSC3.4
RGSC_v3.4187,625,118 - 87,625,270RGDRGSC3.4
RGSC_v3.1187,703,229 - 87,703,381RGD
Celera182,109,796 - 82,109,947UniSTS
RH 3.4 Map1842.1UniSTS
RH 3.4 Map1842.1RGD
SHRSP x BN Map143.4499RGD
SHRSP x BN Map143.4499UniSTS
Cytogenetic Map1q22UniSTS
D1Wox83  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,758,555 - 87,758,780 (+)MAPPERmRatBN7.2
Rnor_6.0191,362,417 - 91,362,641NCBIRnor6.0
Rnor_5.0192,492,791 - 92,493,015UniSTSRnor5.0
RGSC_v3.4187,625,045 - 87,625,269UniSTSRGSC3.4
Celera182,109,722 - 82,109,946UniSTS
Cytogenetic Map1q22UniSTS
Cebpa  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,759,761 - 87,760,401 (+)MAPPERmRatBN7.2
Rnor_6.0191,363,623 - 91,364,262NCBIRnor6.0
Rnor_5.0192,493,997 - 92,494,636UniSTSRnor5.0
RGSC_v3.4187,626,251 - 87,626,890UniSTSRGSC3.4
Celera182,110,928 - 82,111,567UniSTS
Cytogenetic Map1q22UniSTS
PMC94247P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,760,686 - 87,760,768 (+)MAPPERmRatBN7.2
Rnor_6.0191,364,548 - 91,364,629NCBIRnor6.0
Rnor_5.0192,494,922 - 92,495,003UniSTSRnor5.0
RGSC_v3.4187,627,176 - 87,627,257UniSTSRGSC3.4
Celera182,111,853 - 82,111,934UniSTS
Cytogenetic Map1q22UniSTS
Cebpa  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,760,573 - 87,760,672 (+)MAPPERmRatBN7.2
Rnor_6.0191,364,435 - 91,364,533NCBIRnor6.0
Rnor_5.0192,494,809 - 92,494,907UniSTSRnor5.0
RGSC_v3.4187,627,063 - 87,627,161UniSTSRGSC3.4
Celera182,111,740 - 82,111,838UniSTS
Cytogenetic Map1q22UniSTS
Cebpa  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,760,567 - 87,760,756 (+)MAPPERmRatBN7.2
Rnor_6.0191,364,429 - 91,364,617NCBIRnor6.0
Rnor_5.0192,494,803 - 92,494,991UniSTSRnor5.0
RGSC_v3.4187,627,057 - 87,627,245UniSTSRGSC3.4
Celera182,111,734 - 82,111,922UniSTS
Cytogenetic Map1q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000014517   ⟹   ENSRNOP00000063123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl187,759,433 - 87,762,412 (-)Ensembl
Rnor_6.0 Ensembl191,363,492 - 91,366,164 (+)Ensembl
RefSeq Acc Id: NM_001287577   ⟹   NP_001274506
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,896,584 - 96,899,256 (+)NCBI
mRatBN7.2187,759,631 - 87,762,303 (+)NCBI
Rnor_6.0191,363,492 - 91,366,164 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287578   ⟹   NP_001274507
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,896,584 - 96,899,256 (+)NCBI
mRatBN7.2187,759,631 - 87,762,303 (+)NCBI
Rnor_6.0191,363,492 - 91,366,164 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287579   ⟹   NP_001274508
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,896,584 - 96,899,256 (+)NCBI
mRatBN7.2187,759,631 - 87,762,303 (+)NCBI
Rnor_6.0191,363,492 - 91,366,164 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBI
Sequence:
RefSeq Acc Id: NM_012524   ⟹   NP_036656
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,896,584 - 96,899,256 (+)NCBI
mRatBN7.2187,759,631 - 87,762,303 (+)NCBI
Rnor_6.0191,363,492 - 91,366,164 (+)NCBI
Rnor_5.0192,493,857 - 92,495,245 (+)NCBI
RGSC_v3.4187,626,111 - 87,627,499 (+)RGD
Celera182,110,797 - 82,113,472 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001274506 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274508 (Get FASTA)   NCBI Sequence Viewer  
  NP_036656 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA36342 (Get FASTA)   NCBI Sequence Viewer  
  CAA31242 (Get FASTA)   NCBI Sequence Viewer  
  EDM07633 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000104202
GenBank Protein P05554 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_036656   ⟸   NM_012524
- Peptide Label: isoform a
- UniProtKB: P05554 (UniProtKB/Swiss-Prot),   A6JAA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274506   ⟸   NM_001287577
- Peptide Label: isoform c
- UniProtKB: P05554 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274507   ⟸   NM_001287578
- Peptide Label: isoform d
- UniProtKB: P05554 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274508   ⟸   NM_001287579
- Peptide Label: isoform b
- UniProtKB: P05554 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063123   ⟸   ENSRNOT00000014517
bZIP

Name Modeler Protein Id AA Range Protein Structure
AF-P05554-F1-model_v2 AlphaFold P05554 1-358 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689966
Promoter ID:EPDNEW_R488
Type:single initiation site
Name:Cebpa_1
Description:CCAAT/enhancer binding protein alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0191,363,487 - 91,363,547EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-59987 BioCyc
Ensembl Genes ENSRNOG00000010918 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000014517 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
InterPro bZIP UniProtKB/Swiss-Prot
  bZIP_sf UniProtKB/Swiss-Prot
  C/EBP UniProtKB/Swiss-Prot
  C/EBP_chordates UniProtKB/Swiss-Prot
KEGG Report rno:24252 UniProtKB/Swiss-Prot
NCBI Gene 24252 ENTREZGENE
PANTHER CCAAT/ENHANCER BINDING PROTEIN UniProtKB/Swiss-Prot
  CCAAT/ENHANCER-BINDING PROTEIN ALPHA UniProtKB/Swiss-Prot
Pfam bZIP_2 UniProtKB/Swiss-Prot
PhenoGen Cebpa PhenoGen
PIRSF CCAAT/enhancer-binding UniProtKB/Swiss-Prot
PROSITE BZIP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010918 RatGTEx
RNAcentral URS00022AF076 RNACentral
SMART BRLZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot
TIGR TC206743
UniProt A6JAA1 ENTREZGENE, UniProtKB/TrEMBL
  CEBPA_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cebpa  CCAAT/enhancer binding protein alpha  Cebpa  CCAAT/enhancer binding protein (C/EBP), alpha  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cebpa  CCAAT/enhancer binding protein (C/EBP), alpha    CCAAT/enhancer binding protein, alpha  Name updated 1299863 APPROVED
2002-11-06 Cebpa  CCAAT/enhancer binding protein, alpha    CCAAT/enhancer binding protein (C/EBP), alpha  Name updated 625702 APPROVED
2002-02-20 Cebpa  CCAAT/enhancer binding protein (C/EBP), alpha      Name updated to reflect Human and Mouse nomenclature 70282 APPROVED