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Gene: Zranb1 (zinc finger RANBP2-type containing 1) Rattus norvegicus

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Symbol:

Zranb1

Name:

zinc finger RANBP2-type containing 1

RGD ID:

2321751

Description:

Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and cysteine-type deubiquitinase activity. Predicted to be involved in several processes, including positive regulation of Wnt signaling pathway; protein deubiquitination; and regulation of cell morphogenesis. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Orthologous to human ZRANB1 (zinc finger RANBP2-type containing 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; gentamycin; paracetamol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC100359837; LOC100359837; LOC100360606; LOC293571; ubiquitin thioesterase ZRANB1; zinc finger, RAN-binding domain containing 1; zinc finger, RAN-binding domain containing 1 protein-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	197,155,048 - 197,211,518 (+)	NCBI		GRCr8
mRatBN7.2	1	187,725,354 - 187,780,129 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	187,724,320 - 187,779,655 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	204,938,444 - 205,000,163 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	204,959,174 - 204,998,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	211,931,252 - 211,991,353 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	192,458,649 - 192,461,208 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	185,469,920 - 185,525,817 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zranb1	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of ZRANB1 mRNA	CTD	PMID:22206623
Zranb1	Rat	17beta-estradiol	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	Estradiol results in decreased expression of ZRANB1 mRNA	CTD	PMID:39298647
Zranb1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Zranb1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ZRANB1 mRNA	CTD	PMID:21570461 and PMID:24680724
Zranb1	Rat	2-hydroxypropanoic acid	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of ZRANB1 mRNA	CTD	PMID:30851411
Zranb1	Rat	4,4'-diaminodiphenylmethane	decreases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of ZRANB1 mRNA	CTD	PMID:30723492
Zranb1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	bisphenol S results in decreased expression of ZRANB1 mRNA	CTD	PMID:39298647
Zranb1	Rat	aflatoxin B1	increases expression	ISO	Zranb1 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of ZRANB1 mRNA	CTD	PMID:19770486
Zranb1	Rat	all-trans-retinoic acid	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Tretinoin results in increased expression of ZRANB1 mRNA	CTD	PMID:23724009
Zranb1	Rat	antirheumatic drug	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of ZRANB1 mRNA	CTD	PMID:24449571
Zranb1	Rat	arsenite(3-)	multiple interactions	ISO	ZRANB1 (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to ZRANB1 mRNA]	CTD	PMID:32406909
Zranb1	Rat	arsenous acid	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of ZRANB1 mRNA	CTD	PMID:20458559
Zranb1	Rat	bisphenol A	decreases methylation	ISO	Zranb1 (Mus musculus)	6480464	bisphenol A results in decreased methylation of ZRANB1 promoter	CTD	PMID:27312807
Zranb1	Rat	bisphenol A	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	bisphenol A results in decreased expression of ZRANB1 mRNA	CTD	PMID:33221593
Zranb1	Rat	bisphenol F	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	bisphenol F results in decreased expression of ZRANB1 mRNA	CTD	PMID:38685157
Zranb1	Rat	butanal	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of ZRANB1 mRNA	CTD	PMID:26079696
Zranb1	Rat	cadmium dichloride	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of ZRANB1 mRNA	CTD	PMID:21457566
Zranb1	Rat	cadmium dichloride	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of ZRANB1 mRNA	CTD	PMID:38568856
Zranb1	Rat	carbon nanotube	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Zranb1	Rat	CGP 52608	multiple interactions	ISO	ZRANB1 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ZRANB1 gene]	CTD	PMID:28238834
Zranb1	Rat	copper(II) sulfate	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of ZRANB1 mRNA	CTD	PMID:19549813
Zranb1	Rat	cyclosporin A	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	Cyclosporine results in decreased expression of ZRANB1 mRNA	CTD	PMID:19770486
Zranb1	Rat	diarsenic trioxide	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of ZRANB1 mRNA	CTD	PMID:20458559
Zranb1	Rat	Dibutyl phosphate	affects expression	ISO	ZRANB1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ZRANB1 mRNA	CTD	PMID:37042841
Zranb1	Rat	epoxiconazole	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	epoxiconazole results in decreased expression of ZRANB1 mRNA	CTD	PMID:35436446
Zranb1	Rat	fluoranthene	multiple interactions	ISO	Zranb1 (Mus musculus)	6480464	[1-methylanthracene co-treated with fluoranthene] results in increased expression of ZRANB1 mRNA	CTD	PMID:28329830
Zranb1	Rat	formaldehyde	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of ZRANB1 mRNA	CTD	PMID:20655997
Zranb1	Rat	FR900359	increases phosphorylation	ISO	ZRANB1 (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of ZRANB1 protein	CTD	PMID:37730182
Zranb1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of ZRANB1 mRNA	CTD	PMID:33387578
Zranb1	Rat	methylmercury chloride	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of ZRANB1 mRNA	CTD	PMID:28001369
Zranb1	Rat	ozone	multiple interactions	ISO	Zranb1 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of Ozone] which results in decreased expression of ZRANB1 mRNA	CTD	PMID:34911549
Zranb1	Rat	p-menthan-3-ol	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Menthol results in decreased expression of ZRANB1 mRNA	CTD	PMID:26760959
Zranb1	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of ZRANB1 mRNA	CTD	PMID:33387578
Zranb1	Rat	pentanal	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	pentanal results in decreased expression of ZRANB1 mRNA	CTD	PMID:26079696
Zranb1	Rat	phenobarbital	affects expression	ISO	ZRANB1 (Homo sapiens)	6480464	Phenobarbital affects the expression of ZRANB1 mRNA	CTD	PMID:19159669
Zranb1	Rat	pirinixic acid	increases expression	ISO	Zranb1 (Mus musculus)	6480464	pirinixic acid results in increased expression of ZRANB1 mRNA	CTD	PMID:17426115
Zranb1	Rat	rac-lactic acid	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of ZRANB1 mRNA	CTD	PMID:30851411
Zranb1	Rat	sodium arsenate	increases expression	ISO	Zranb1 (Mus musculus)	6480464	sodium arsenate results in increased expression of ZRANB1 mRNA	CTD	PMID:21795629
Zranb1	Rat	sodium arsenite	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of ZRANB1 mRNA	CTD	PMID:38568856
Zranb1	Rat	succimer	multiple interactions	ISO	Zranb1 (Mus musculus)	6480464	[Succimer binds to Magnetite Nanoparticles] which results in decreased expression of ZRANB1 mRNA and [Succimer co-treated with Magnetite Nanoparticles] results in decreased expression of ZRANB1 mRNA	CTD	PMID:21641980 and PMID:26378955
Zranb1	Rat	sunitinib	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Sunitinib results in increased expression of ZRANB1 mRNA	CTD	PMID:31533062
Zranb1	Rat	temozolomide	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Temozolomide results in increased expression of ZRANB1 mRNA	CTD	PMID:31758290
Zranb1	Rat	testosterone	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Testosterone results in decreased expression of ZRANB1 mRNA	CTD	PMID:33359661
Zranb1	Rat	tetrachloromethane	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	Carbon Tetrachloride results in decreased expression of ZRANB1 mRNA	CTD	PMID:31919559
Zranb1	Rat	troglitazone	decreases expression	ISO	Zranb1 (Mus musculus)	6480464	troglitazone results in decreased expression of ZRANB1 mRNA	CTD	PMID:28973697
Zranb1	Rat	urethane	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Urethane results in increased expression of ZRANB1 mRNA	CTD	PMID:28818685
Zranb1	Rat	valproic acid	decreases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ZRANB1 mRNA	CTD	PMID:23179753 and PMID:28001369
Zranb1	Rat	valproic acid	increases expression	ISO	ZRANB1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of ZRANB1 mRNA	CTD	PMID:29154799
Zranb1	Rat	valproic acid	affects expression	ISO	ZRANB1 (Homo sapiens)	6480464	Valproic Acid affects the expression of ZRANB1 mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zranb1	Rat	cell migration	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:21834987	RGD	PMID:21834987
Zranb1	Rat	cell migration	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	cell migration	involved_in	IBA	PANTHER:PTN000332188 and UniProtKB:Q9UGI0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	cytoskeleton organization	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:21834987	RGD	PMID:21834987
Zranb1	Rat	cytoskeleton organization	involved_in	IBA	PANTHER:PTN000332188 and UniProtKB:Q9UGI0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	cytoskeleton organization	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	positive regulation of Wnt signaling pathway	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:18281465	RGD	PMID:18281465
Zranb1	Rat	positive regulation of Wnt signaling pathway	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	positive regulation of Wnt signaling pathway	involved_in	IBA	FB:FBgn0037734 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	protein deubiquitination	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:33637724	RGD	PMID:33637724
Zranb1	Rat	protein deubiquitination	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	protein deubiquitination	involved_in	IEA	ARBA:ARBA00027879	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Zranb1	Rat	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:18281465	RGD	PMID:18281465
Zranb1	Rat	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	involved_in	IBA	PANTHER:PTN001001090 and UniProtKB:Q9UGI0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	protein K29-linked deubiquitination	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:23827681 more ...	RGD	PMID:23827681 more ...
Zranb1	Rat	protein K29-linked deubiquitination	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	protein K33-linked deubiquitination	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:23827681 more ...	RGD	PMID:23827681 more ...
Zranb1	Rat	protein K33-linked deubiquitination	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	protein K63-linked deubiquitination	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:18281465 and PMID:23827681	RGD	PMID:18281465 and PMID:23827681
Zranb1	Rat	protein K63-linked deubiquitination	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zranb1	Rat	regulation of cell morphogenesis	involved_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:21834987	RGD	PMID:21834987
Zranb1	Rat	regulation of cell morphogenesis	involved_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	Wnt signaling pathway	involved_in	IEA	UniProtKB-KW:KW-0879	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zranb1	Rat	cytoplasm	is_active_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:25752577	RGD	PMID:25752577
Zranb1	Rat	cytoplasm	located_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	cytoplasm	is_active_in	IBA	MGI:1196377 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	cytoplasm	located_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:11463333 and PMID:21834987	RGD	PMID:11463333 and PMID:21834987
Zranb1	Rat	cytosol	located_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	cytosol	located_in	ISO	ZRANB1 (Homo sapiens)	1624291		RGD	GO_REF:0000052
Zranb1	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	nucleoplasm	located_in	ISO	ZRANB1 (Homo sapiens)	1624291		RGD	GO_REF:0000052
Zranb1	Rat	nucleus	is_active_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:25752577	RGD	PMID:25752577
Zranb1	Rat	nucleus	located_in	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	nucleus	is_active_in	IBA	PANTHER:PTN001001090 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	nucleus	located_in	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:11463333	RGD	PMID:11463333

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zranb1	Rat	cysteine-type deubiquitinase activity	enables	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:18281465 more ...	RGD	PMID:18281465 more ...
Zranb1	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Zranb1	Rat	cysteine-type deubiquitinase activity	enables	IBA	MGI:2654703 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zranb1	Rat	deubiquitinase activity	enables	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:33637724	RGD	PMID:33637724
Zranb1	Rat	deubiquitinase activity	enables	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zranb1	Rat	K63-linked polyubiquitin modification-dependent protein binding	enables	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:18281465	RGD	PMID:18281465
Zranb1	Rat	K63-linked polyubiquitin modification-dependent protein binding	enables	IBA	MGI:2654703 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zranb1	Rat	K63-linked polyubiquitin modification-dependent protein binding	enables	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zranb1	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zranb1	Rat	polyubiquitin modification-dependent protein binding	enables	ISO	ZRANB1 (Homo sapiens)	1624291	PMID:25752573 and PMID:25752577	RGD	PMID:25752573 and PMID:25752577
Zranb1	Rat	polyubiquitin modification-dependent protein binding	enables	IEA	UniProtKB:Q9UGI0 and ensembl:ENSP00000352676	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zranb1	Rat	protein binding	enables	ISO	ZRANB1 (Homo sapiens)	1624291	UniProtKB:A6NER0 more ...	RGD	PMID:11463333 more ...
Zranb1	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:11463333	PMID:15632090	PMID:18281465	PMID:21834987	PMID:23827681	PMID:24768539

Zranb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	197,155,048 - 197,211,518 (+)	NCBI		GRCr8
mRatBN7.2	1	187,725,354 - 187,780,129 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	187,724,320 - 187,779,655 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	204,938,444 - 205,000,163 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	204,959,174 - 204,998,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	211,931,252 - 211,991,353 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	192,458,649 - 192,461,208 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	185,469,920 - 185,525,817 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

ZRANB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	124,916,894 - 124,988,189 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	124,942,123 - 124,988,189 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	126,630,692 - 126,676,758 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	126,620,682 - 126,665,995 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	126,620,681 - 126,663,759	NCBI
Celera	10	120,404,500 - 120,449,814 (+)	NCBI		Celera
Cytogenetic Map	10	q26.13	NCBI
HuRef	10	120,317,070 - 120,363,002 (+)	NCBI		HuRef
CHM1_1	10	126,912,463 - 126,957,768 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	125,823,167 - 125,869,209 (+)	NCBI		T2T-CHM13v2.0

Zranb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	132,532,905 - 132,588,127 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	132,532,871 - 132,588,120 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	132,931,176 - 132,986,398 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	132,931,142 - 132,986,391 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	140,141,305 - 140,175,634 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	132,787,965 - 132,822,294 (+)	NCBI		MGSCv36	mm8
Celera	7	132,755,614 - 132,789,937 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	76.32	NCBI

Zranb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	2,873,170 - 2,922,069 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	2,864,737 - 2,922,069 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZRANB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	136,766,528 - 136,837,960 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	136,772,160 - 136,843,311 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	121,477,916 - 121,549,296 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	125,766,209 - 125,814,015 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	125,766,178 - 125,814,768 (+)	Ensembl	panpan1.1		panPan2

ZRANB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	34,220,596 - 34,259,642 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	34,220,596 - 34,256,620 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	34,264,304 - 34,321,513 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	34,759,763 - 34,817,033 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	34,718,820 - 34,814,205 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	34,316,924 - 34,374,155 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	34,308,002 - 34,365,164 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	34,560,074 - 34,617,303 (+)	NCBI		UU_Cfam_GSD_1.0

Zranb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	12,390,881 - 12,439,746 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	13,135,740 - 13,170,462 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	13,135,759 - 13,170,462 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZRANB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	134,254,000 - 134,329,064 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	134,253,927 - 134,327,835 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	145,804,215 - 145,880,481 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZRANB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	117,561,468 - 117,634,226 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	117,561,226 - 117,631,817 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	78,918,277 - 78,989,747 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zranb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	22,165,011 - 22,228,635 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	22,168,025 - 22,228,990 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zranb1
188 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	25
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000023257
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383668	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	184550676	229550676	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	123556856	242907031	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	117917486	196963478	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	185145134	221264292	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	183970203	243914901	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
1359018	Hrtrt20	Heart rate QTL 20	3.08		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	185356336	202902618	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	182623426	219932796	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	181746937	196383668	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	185356336	231689108	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	183970203	243914901	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	123556856	196963478	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	181829673	224569684	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	178810256	188377506	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383668	Rat

AI072602

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	187,779,887 - 187,780,094 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	204,998,602 - 204,998,808	NCBI	Rnor6.0
Rnor_5.0	1	211,991,112 - 211,991,318	UniSTS	Rnor5.0
RGSC_v3.4	1	192,460,863 - 192,461,069	UniSTS	RGSC3.4
Celera	1	185,524,256 - 185,524,462	UniSTS
RH 3.4 Map	1	1431.4	UniSTS

D7Wsu87e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	187,779,055 - 187,779,306 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	204,997,770 - 204,998,020	NCBI	Rnor6.0
Rnor_5.0	1	211,990,280 - 211,990,530	UniSTS	Rnor5.0
RGSC_v3.4	1	192,460,031 - 192,460,281	UniSTS	RGSC3.4
Celera	1	185,523,424 - 185,523,674	UniSTS

RH130822

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	187,778,657 - 187,778,840 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	204,997,372 - 204,997,554	NCBI	Rnor6.0
Rnor_5.0	1	211,989,882 - 211,990,064	UniSTS	Rnor5.0
RGSC_v3.4	1	192,459,633 - 192,459,815	UniSTS	RGSC3.4
Celera	1	185,523,026 - 185,523,208	UniSTS
RH 3.4 Map	1	1433.4	UniSTS

BE108179

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	187,779,431 - 187,779,586 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	204,998,146 - 204,998,300	NCBI	Rnor6.0
Rnor_5.0	1	211,990,656 - 211,990,810	UniSTS	Rnor5.0
RGSC_v3.4	1	192,460,407 - 192,460,561	UniSTS	RGSC3.4
Celera	1	185,523,800 - 185,523,954	UniSTS
RH 3.4 Map	1	1433.4	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001427548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002725768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023257 ⟹ ENSRNOP00000023257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	187,724,320 - 187,779,655 (+)	Ensembl
Rnor_6.0 Ensembl	1	204,959,174 - 204,998,019 (+)	Ensembl

RefSeq Acc Id:

NM_001427548 ⟹ NP_001414477

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	197,155,434 - 197,210,198 (+)	NCBI

RefSeq Acc Id:

XM_006230445 ⟹ XP_006230507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	197,155,429 - 197,211,518 (+)	NCBI
mRatBN7.2	1	187,725,354 - 187,780,129 (+)	NCBI
Rnor_6.0	1	204,938,444 - 205,000,163 (+)	NCBI
Rnor_5.0	1	211,931,252 - 211,991,353 (+)	NCBI

Sequence:

show sequence

GCCGCCGCGGCCGCCCGGCGCCGCGCGTCAGACGGGGAGGAGGAGGAGTCGCGGCCGCCAGGAATAGCTATTCACAGTCAGACAGAACCACTTACACGTTTTGCAGTATCTTCCGAGGAAGTCAGAAT
CTGAGCCAGCATGAAGATTGAATCTTGTCTTTGGTCTGATTTACCTTTATTGTAACCATGTGCAAGGTGGAGGTTATAGCATGGAAACTAAAATCTTACTTCCTGCCTGACATAACTCACTTCAAGAA
GTACACAATGTCAGAACATGGGATTAAGTGGGCCTGTGAATATTGTACGTATGAAAACTGGCCGTCTGCAATCAAGTGTACTATGTGTCGTGCCCAGAGACCCAGTGGAACAATTATTACAGAAGATC
CATTTAAAAGTGGTTCAAGTGATGTTGGTAGAGATTGGGACCCTTCCAGCACTGAAGGCGGAAGTAGTCCTTTGATATGTCCAGACTCTAGTGCAAGACCAAGGGTTAAGTCTTCATACAGCATGGAG
AATGCAAATAAGTGGTCATGCCACATGTGTACATATTTGAACTGGCCAAGAGCAATCCGATGTACCCAGTGCTTATCCCAACGTAGGACCAGGAGTCCCACAGAATCTCCTCAATCCTCAGGATCTGG
TTCAAGACCAGTTGCTTTTTCTGTTGATCCTTGTGAAGAATACAATGATAGAAATAAACTGAATACAAGGACCCAGCATTGGACTTGTTCTGTTTGCACATATGAAAACTGGGCTAAGGCTAAAAAAT
GTGTTGTTTGTGATCACCCCAGACCTAATAACATTGAAGCAATAGAGTTGGCAGAGACTGAAGAGGCTTCTTCAATAATAAATGAGCAAGACAGAGCTCGATGGAGGGGAGGCTGCAGTAGTGGTAAT
AGCCAAAGAAGATCACCTCCAACTACGAAACGGGACTCTGAAGTGAAAATGGATTTTCAGAGGATTGAATTGGCTGGTGCTGTTGGTACCAAGGAGGAACTTGAAGTGGACTTTAAAAAACTAAAGCA
GATTAAAAATAGGATGAAAAAGACTGATTGGTTATTCCTCAATGCCTGTGTGGGGGTTGTGGAAGGTGATTTAGCAGCCATAGAAGCATACAAGTCATCAGGAGGAGACATCGCACGCCAGCTCACTG
CAGATGAAGTGCGCTTGCTGAACCGTCCTTCTGCTTTTGATGTTGGCTACACTCTGGTCCACCTGGCCATACGCTTCCAGAGGCAGGACATGTTAGCAATACTGCTTACAGAGGTGTCTCAACAAGCA
GCAAAGTGTATTCCAGCCATGGTGTGCCCTGAACTGACAGAACAAATCCGGAGAGAAATAGCTGCTTCTCTTCACCAGAGAAAGGGGGATTTTGCTTGCTATTTTCTGACTGACCTTGTAACATTTAC
ATTACCAGCAGATATTGAAGATTTGCCTCCAACAGTTCAGGAAAAATTATTTGATGAGGTGCTTGATAGAGATGTTCAAAAAGAGCTAGAGGAAGAATCTCCAATTATAAACTGGTCTTTGGAATTGG
CTACACGTTTGGACAGTAGACTGTATGCACTTTGGAACCGGACTGCCGGAGATTGTTTACTTGACTCAGTACTACAAGCTACCTGGGGCATTTATGACAAAGACTCGGTGCTTCGGAAAGCCCTGCAT
GACAGCCTGCATGACTGTTCACATTGGTTTTACACACGCTGGAAAGACTGGGAGTCGTGGTATTCCCAGAGCTTTGGTTTACATTTTTCACTGAGGGAAGAACAATGGCAAGAAGACTGGGCATTTAT
ACTCTCTCTAGCTAGTCAGCCTGGAGCAAGTTTGGAACAGACACACATTTTTGTACTTGCACATATTCTTAGACGACCAATTATAGTTTATGGAGTAAAATATTATAAGAGTTTCCGAGGAGAAACAT
TAGGATATACCCGGTTTCAAGGAGTTTATCTGCCTTTGTTGTGGGAACAGAGTTTTTGTTGGAAAAGTCCAATTGCTCTGGGCTATACAAGGGGCCACTTCTCTGCTTTGGTTGCCATGGAGAATGAT
GGGTATGGCAACCGAGGTGCTGGTGCTAATCTGAACACTGATGATGATGTCACCATCACATTTTTGCCTCTGGTTGACAGTGAAAGGAAGCTCCTTCATGTGCACTTCCTTTCTGCTCAGGAGCTAGG
TAATGAGGAGCAGCAAGAGAAACTGCTCAGAGAGTGGCTGGACTGCTGTGTGACTGAAGGGGGCGTTCTAGTGGCCATGCAGAAAAGCTCTCGGCGGAGAAACCACCCCTTGGTTACACAAATGGTAG
AAAAATGGCTTGACCGCTACAGACAGATCCGGCCGTGTACATCCCTGTCTGATGGAGAGGAAGACGAGGATGATGAGGATGAATGAAACAAACATCTAAGGAGAAAAAAAGACCAAGGCATCAGGTCT
GAGATGGCCCCAAAGTTAGTGTGGTATCTTAAGCCGAATATGCAGCATGGAGCGAGCCATACCCTGCCGGATCTGCTCCCAAGTTATCTTTCTGTTCCGCACTCACTAGAGAGAACTGAGTGAATCTG
CATGAGGAGATGGAGAACTTTGGTTGAACTACAGTTTGTAAAAAAAGGAAAAAAAAAAAACCCTAATTTTATTGCAGAACTTTTTTCTTTCCAATTGTAAATCTGTCTATGAATGTAAACGCATGTGG
TTGTTTAAGAAGTTGTGTACTAGGAAAAGTGCACCAGCATCTTCATGTTACCAAGACCATTTTCCCAGCATGGGCACTCACAAAAAGCACATAGCAGACAAACCATTGAGATATTCTCATTAGCACCT
GACATCCTGCTCCCACCGTACAAGACCCATATCCCACTGTTTCAGAGATTTGGAAACTTTGTACAAATTATCCACGGCAAGATAAAAATAAACACGCCTTTATTTTATTAATAATTTAGTTCCTGTTG
TGCCCAATAAAATAAAATAAAAAAAAATCAAACCCTTAGGAACAAACTGCAAGAAAAACTAGCAAGTGTTTGGAGTGAACTTATCATAAACATTGTCTGTTGTGTTTGAAGACGGTTTTAGTTTCTGT
TTTCAAGTTTTCTGATTTGCCCCTTTCATTATTTAGATATTTATTTGTTTGGAAGAGTGCCCTGTAAAGAGGGTTCTTACTCAACTCTGGGCAGGTGCATTTGTGCACTTATGCCCTGAATGGATAGA
TAGAAAGGGAGCAGCTCACTTGTCACTGGGTGAGTTATGTGACAGTCACTTGTGACTCAACCTGTTCTGTTCCCAGGTGGCCATGCAGACAGTCTTCAGATTCTTCCTGTCTTTGTCACCTCTGCTCT
AAGCAGATCCTGTATTAAGGGCATACCTTTGCTTAGGCTGATTGGGAATACAGTTCAGTACAGAATAAAGACTTTTAAAATGCAGTAAGGTGGTCAATGCATTGTATGATCAGTTTCTGTGTAGTCTG
AGAACTTTTGCATGTTGGTTAGTTGTAGCCATTAAAGTTAAAACCATACTTTTAGAAAAACATTTATGGAGAGTGTTAATTGACCACTTCAGGCATATATTAGTACTGGGTAAACATCTCTGACCTCC
TCAGGCACAACACGAAGTGTCCTGATAAGCACTTAGACTGATGTGGCAAGCAGTTGCAAAGTAGCAAATACACACATTTCCTCTTTTCCTCCCCTTTACTGAAAAGGCTGTGAAAACTTTTAAATCTT
GTTTTTCTGATGAGATGGTATTGAAGTGTATACAACTTTTAAGTTTGCTGGAATACTAAAAAGAAAAAAATACCTATGAGCTGTTATGTCTTTAGTTCTCTCTCTCTTGTGAACACTCAGTAAAAAGG
TGTTCTCAGGATGAAAGGTCATTTATGCTGCATGCTAAAACCAGAAAGTAATTTTCACAGTAAGGTGACTCCATATGAATTGTGGTAACAATACTGGTAAATGTTACTGTTCCAGTAGTTCCTACAAA
TTGACTATTTTGTTTTCATTTTGATCAGTGAGTAATCACCAAGTCAAAGGTTGCCTGCCGCTCTAAGTCCTTAGCATGCATAGCGTCTAGAATAGGTGATCTCCATGTGTAGTTGATTTTTTGGGAGG
CAGATCCAGTTAAGCAGTTAAGCCTTCCTCCCAGATAAGCCACAGAGCTGAAAGGAAAAACTGGTCTGGGTACATCTATGTTGTACCCAAACCTTGTGGTACAGAGTCAGGCTCAGGACTGAACCTTG
TTCTGCATATTGTAGTTTCTTGAGTATCCTTTCCCCAGTTCCCTCTGTATTTATTTATTTATTTATTTATTTATGACCAGTGACCCTGACCACATATAATTTGATAGGTACCCATTCTTCCCCGTGGG
AAAGAATTAAAGAAGACTCCATTTCTTGGAATGGGGCTTTCGTTAGTCTCTATAGCAGACTGCTGGCTGTGAAAAGGCCAACACTTTTGGGAAGTCAATGCTATGCTCTTGAACTAAACCAACAGCCA
TAATTATTGTCCCAAGAACGTGTAAAGCCGTCCTTTGTCAAAGATTATACATGGCTGCGTGGCAAGTGTAGGTATCTTTAAATGGACTGGACAGTAATACTTTTATAACTACGTGGACTTTATGGTTC
TTTTTCTAGGGTGAAACCAGTACTTTGTTTTTATTCTGATGTTGTTCTTTGGAGTCAGTTTATATAATCATTTCTAAAGGACTGTTTAAGCAACCGCAATCTAATTAAACAAAACCTAGGCACA

hide sequence

RefSeq Acc Id:

XM_039101239 ⟹ XP_038957167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	197,172,721 - 197,211,518 (+)	NCBI
mRatBN7.2	1	187,742,649 - 187,780,129 (+)	NCBI

RefSeq Acc Id:

XM_063281597 ⟹ XP_063137667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	197,155,048 - 197,211,518 (+)	NCBI

RefSeq Acc Id:

XM_063281657 ⟹ XP_063137727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	197,155,434 - 197,211,518 (+)	NCBI


Protein RefSeqs	NP_001414477	(Get FASTA)	NCBI Sequence Viewer
	XP_006230507	(Get FASTA)	NCBI Sequence Viewer
	XP_038957167	(Get FASTA)	NCBI Sequence Viewer
	XP_063137667	(Get FASTA)	NCBI Sequence Viewer
	XP_063137727	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11741	(Get FASTA)	NCBI Sequence Viewer
	EDM11742	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023257
	ENSRNOP00000023257.5

RefSeq Acc Id:	XP_006230507 ⟸ XM_006230445
- Peptide Label:	isoform X1
- UniProtKB:	D4A3I0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCKVEVIAWKLKSYFLPDITHFKKYTMSEHGIKWACEYCTYENWPSAIKCTMCRAQRPSGTIITEDPFKSGSSDVGRDWDPSSTEGGSSPLICPDSSARPRVKSSYSMENANKWSCHMCTYLNWPRAI RCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKLNTRTQHWTCSVCTYENWAKAKKCVVCDHPRPNNIEAIELAETEEASSIINEQDRARWRGGCSSGNSQRRSPPTTKRDSEVKMDF QRIELAGAVGTKEELEVDFKKLKQIKNRMKKTDWLFLNACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEVSQQAAKCIPAMVCPELTEQIRRE IAASLHQRKGDFACYFLTDLVTFTLPADIEDLPPTVQEKLFDEVLDRDVQKELEEESPIINWSLELATRLDSRLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWES WYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALVAMENDGYGNRGAGANLNTDDDVTI TFLPLVDSERKLLHVHFLSAQELGNEEQQEKLLREWLDCCVTEGGVLVAMQKSSRRRNHPLVTQMVEKWLDRYRQIRPCTSLSDGEEDEDDEDE hide sequence

Ensembl Acc Id:

ENSRNOP00000023257 ⟸ ENSRNOT00000023257

RefSeq Acc Id:	XP_038957167 ⟸ XM_039101239
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063137667 ⟸ XM_063281597
- Peptide Label:	isoform X1
- UniProtKB:	D4A3I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137727 ⟸ XM_063281657
- Peptide Label:	isoform X2

Protein Domains

OTU RanBP2-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3I0-F1-model_v2	AlphaFold	D4A3I0	1-734	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-57199	BioCyc
Ensembl Genes	ENSRNOG00000017294	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023257	ENTREZGENE
	ENSRNOT00000023257.8	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.560	UniProtKB/TrEMBL
	Zinc finger, RanBP2-type	UniProtKB/TrEMBL
InterPro	AnkUBD	UniProtKB/TrEMBL
	OTU	UniProtKB/TrEMBL
	OTU_Deubiquitinase	UniProtKB/TrEMBL
	Znf_RanBP2	UniProtKB/TrEMBL
	Znf_RanBP2_sf	UniProtKB/TrEMBL
	ZRANB1_OTU	UniProtKB/TrEMBL
KEGG Report	rno:100360606	UniProtKB/TrEMBL
NCBI Gene	100360606	ENTREZGENE
PANTHER	UBIQUITIN THIOESTERASE	UniProtKB/TrEMBL
	UBIQUITIN THIOESTERASE ZRANB1	UniProtKB/TrEMBL
Pfam	AnkUBD	UniProtKB/TrEMBL
	OTU	UniProtKB/TrEMBL
	zf-RanBP	UniProtKB/TrEMBL
PhenoGen	Zranb1	PhenoGen
PROSITE	OTU	UniProtKB/TrEMBL
	ZF_RANBP2_1	UniProtKB/TrEMBL
	ZF_RANBP2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017294	RatGTEx
SMART	ZnF_RBZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90209	UniProtKB/TrEMBL
UniProt	A6HX10	ENTREZGENE, UniProtKB/TrEMBL
	D4A3I0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zranb1	zinc finger RANBP2-type containing 1	Zranb1	zinc finger, RAN-binding domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Zranb1	zinc finger, RAN-binding domain containing 1	LOC100359837	hypothetical protein LOC100359837	Data merged from RGD:2323305	737654	PROVISIONAL
2013-08-07	LOC100360606	zinc finger, RAN-binding domain containing 1 protein-like	Zranb1	zinc finger, RAN-binding domain containing 1	Data merged from RGD:1308824	737654	APPROVED
2013-08-07	Zranb1	zinc finger, RAN-binding domain containing 1	LOC100360606	zinc finger, RAN-binding domain containing 1 protein-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100359837	hypothetical protein LOC100359837			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-06	LOC100360606	zinc finger, RAN-binding domain containing 1 protein-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Zranb1	zinc finger, RAN-binding domain containing 1	Zranb1_predicted	zinc finger, RAN-binding domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zranb1_predicted	zinc finger, RAN-binding domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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