Aldh3a1 (aldehyde dehydrogenase 3 family, member A1) - Rat Genome Database

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Gene: Aldh3a1 (aldehyde dehydrogenase 3 family, member A1) Rattus norvegicus
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Symbol: Aldh3a1
Name: aldehyde dehydrogenase 3 family, member A1
RGD ID: 2088
Description: Enables 3-chloroallyl aldehyde dehydrogenase activity. Involved in several processes, including response to cAMP; response to glucocorticoid; and response to hypoxia. Located in cytosol. Human ortholog(s) of this gene implicated in arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1); PARTICIPATES IN alkaptonuria pathway; cyclophosphamide pharmacodynamics pathway; cyclophosphamide pharmacokinetics pathway; INTERACTS WITH 1,2,3,7,8-Pentachlorodibenzodioxin; 1,2,4-trimethylbenzene; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ahd-c; AHDC; Aldehyde dehydrogenase (Ahd-c); aldehyde dehydrogenase 3A1; aldehyde dehydrogenase class 3; aldehyde dehydrogenase family 3 member A1; aldehyde dehydrogenase family 3 subfamily A1; aldehyde dehydrogenase family 3, member A1; Aldehyde dehydrogenase family 3, subfamily A1; aldehyde dehydrogenase, dimeric NADP-preferring; Aldh; Aldh3; HTC-ALDH; tumor-associated aldehyde dehydrogenase tumor ALDH; tumor-associated aldehyde dehydrogenase, tumor ALDH
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,392,464 - 46,402,151 (+)NCBIGRCr8
mRatBN7.21045,892,993 - 45,902,680 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,892,924 - 45,902,681 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,595,478 - 50,605,184 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,085,870 - 50,095,575 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,589,438 - 45,599,135 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,490,168 - 47,499,855 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,490,153 - 47,499,876 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,265,007 - 47,274,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,365,195 - 47,374,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,378,817 - 47,388,503 (+)NCBI
Celera1045,146,398 - 45,156,083 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Aldh3a1Ratarteriosclerosis  ISOALDH3A1 (Homo sapiens)2300309associated with Diabetes Mellitus more ...RGD 
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Original Reference(s)
Aldh3a1Ratautistic disorder  ISOALDH3A1 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Aldh3a1Ratkeratoconus  ISOALDH3A1 (Homo sapiens)8554872ClinVar Annotator: match by term: KeratoconusClinVar 
Aldh3a1RatMeckel Syndrome 9  ISOALDH3A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Meckel syndrome and type 9ClinVarPMID:21493627
Aldh3a1RatPotocki-Lupski syndrome  ISOALDH3A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Potocki-Lupski syndromeClinVarPMID:28837307
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Original Reference(s)
Aldh3a1Ratautism spectrum disorder  ISOALDH3A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546
Aldh3a1Ratcataract  ISOALDH3A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28038895
Aldh3a1RatCorneal Injuries  ISOALDH3A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28038895

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Original Reference(s)
Aldh3a1Rat1,2,3,7,8-Pentachlorodibenzodioxin increases expressionEXP 64804641 more ...CTDPMID:29738842
Aldh3a1Rat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of ALDH3A1 proteinCTDPMID:17337753
Aldh3a1Rat1,2-naphthoquinone increases expressionISOAldh3a1 (Mus musculus)64804641 and 2-naphthoquinone results in increased expression of ALDH3A1 mRNACTDPMID:26558468
Aldh3a1Rat17beta-estradiol increases expressionISOALDH3A1 (Homo sapiens)6480464Estradiol results in increased expression of ALDH3A1 mRNACTDPMID:19619570
Aldh3a1Rat17beta-estradiol multiple interactionsISOAldh3a1 (Mus musculus)6480464Estradiol promotes the reaction [Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNA]CTDPMID:18691609
Aldh3a1Rat17beta-estradiol multiple interactionsISOALDH3A1 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of ALDH3A1 mRNA and [Estradiol co-treated with TGFB1 protein] results in decreased expression of ALDH3A1 mRNACTDPMID:19619570 and PMID:30165855
Aldh3a1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:20566336
Aldh3a1Rat2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:29738842
Aldh3a1Rat2,3,3',4,4',5-Hexachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:29738842
Aldh3a1Rat2,3,4,7,8-Pentachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:21724226 more ...
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOALDH3A1 (Homo sapiens)6480464[Endosulfan co-treated with Tetrachlorodibenzodioxin] results in increased expression of ALDH3A1 mRNA more ...CTDPMID:19619570 more ...
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAldh3a1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ALDH3A1 mRNACTDPMID:21570461 and PMID:26377647
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOALDH3A1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNACTDPMID:12377990 more ...
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAldh3a1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNACTDPMID:10677587 more ...
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine increases activityISOAldh3a1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased activity of ALDH3A1 proteinCTDPMID:7828219 and PMID:7955076
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464Cycloheximide promotes the reaction [Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNA] more ...CTDPMID:1416978 and PMID:1953764
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ALDH3A1 mRNACTDPMID:22298810
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOALDH3A1 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of ALDH3A1 mRNACTDPMID:22298810
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNA and Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 proteinCTDPMID:1416978 more ...
Aldh3a1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAldh3a1 (Mus musculus)6480464AHR protein promotes the reaction [Tetrachlorodibenzodioxin results in increased expression of ALDH3A1 mRNA] more ...CTDPMID:1416978 more ...

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Biological Process
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Cellular Component
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Original Reference(s)
Aldh3a1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Aldh3a1Ratcytoplasm located_inISOAldh3a1 (Mus musculus)1624291 PMID:25286108RGDPMID:25286108
Aldh3a1Ratcytoplasm is_active_inIBAMGI:1353451 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aldh3a1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Aldh3a1Ratcytosol located_inIDA 8554812PMID:11306046UniProt 
Aldh3a1Ratcytosol located_inISOALDH3A1 (Homo sapiens)1624291 RGDGO_REF:0000052
Aldh3a1Ratendoplasmic reticulum located_inISOALDH3A1 (Homo sapiens)1624291 RGDGO_REF:0000054
Aldh3a1Ratmembrane located_inISOAldh3a1 (Mus musculus)1624291 PMID:25286108RGDPMID:25286108
Aldh3a1Ratplasma membrane located_inISOALDH3A1 (Homo sapiens)1624291 RGDGO_REF:0000052
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Molecular Function
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Original Reference(s)
Aldh3a1Rat3-chloroallyl aldehyde dehydrogenase activity enablesIBAMGI:1353451 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aldh3a1Rat3-chloroallyl aldehyde dehydrogenase activity  IDA 632185 RGD 
Aldh3a1Rat3-chloroallyl aldehyde dehydrogenase activity enablesISOAldh3a1 (Mus musculus)1624291MGI:2180794 PMID:11784860 more ...RGDPMID:11784860 more ...
Aldh3a1Ratalcohol dehydrogenase (NADP+) activity enablesISSUniProtKB:P308381600115GO_REF:0000024UniProtGO_REF:0000024
Aldh3a1Ratalcohol dehydrogenase (NADP+) activity enablesISOALDH3A1 (Homo sapiens)1624291 PMID:1737758RGDPMID:1737758
Aldh3a1Rataldehyde dehydrogenase (NAD+) activity enablesISSUniProtKB:P308381600115GO_REF:0000024UniProtGO_REF:0000024
Aldh3a1Rataldehyde dehydrogenase (NAD+) activity enablesIEARHEA:161851600115GO_REF:0000116RHEAGO_REF:0000116
Aldh3a1Rataldehyde dehydrogenase (NAD+) activity enablesISOAldh3a1 (Mus musculus)1624291 PMID:25286108RGDPMID:25286108
Aldh3a1Rataldehyde dehydrogenase (NAD+) activity enablesIBAMGI:1353451 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aldh3a1Rataldehyde dehydrogenase (NAD+) activity enablesISOALDH3A1 (Homo sapiens)1624291 PMID:1737758RGDPMID:1737758
Aldh3a1Rataldehyde dehydrogenase [NAD(P)+] activity enablesIEAEC:1.2.1.51600115GO_REF:0000003UniProtGO_REF:0000003
Aldh3a1Ratbenzaldehyde dehydrogenase (NAD+) activity enablesISOALDH3A1 (Homo sapiens)1624291 PMID:4015840RGDPMID:4015840
Aldh3a1Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Aldh3a1Ratoxidoreductase activity enablesIEAInterPro:IPR015590 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Aldh3a1Ratoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor enablesIEAARBA:ARBA000284821600115GO_REF:0000117UniProtGO_REF:0000117
Aldh3a1Ratoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor enablesIEAInterPro:IPR0161631600115GO_REF:0000002InterProGO_REF:0000002
Aldh3a1Ratoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor enablesISOAldh3a1 (Mus musculus)1624291 PMID:10376761RGDPMID:10376761
Aldh3a1Ratprotein binding enablesISOALDH3A1 (Homo sapiens)1624291UniProtKB:O75344 more ...RGDPMID:21044950 and PMID:32296183
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Imported Annotations - SMPDB

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Original Reference(s)
Aldh3a1Ratalkaptonuria pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00169
Aldh3a1Ratcyclophosphamide pharmacodynamics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00447
Aldh3a1Ratcyclophosphamide pharmacokinetics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00604
Aldh3a1RatD-glycericacidemia pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00529
Aldh3a1Ratdisulfiram pharmacodynamics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00429
Aldh3a1Ratdopamine beta-hydroxylase deficiency pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00498
Aldh3a1Ratfamilial lipoprotein lipase deficiency pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00530
Aldh3a1Ratfelbamate pharmacokinetics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00633
Aldh3a1Ratglycerol kinase deficiency pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00187
Aldh3a1Ratglycerolipid metabolic pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00039
Aldh3a1Rathawkinsinuria pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00190
Aldh3a1Rathistidine metabolic pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00044
Aldh3a1Rathistidinemia pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00191
Aldh3a1Ratifosfamide pharmacodynamics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00448
Aldh3a1Ratifosfamide pharmacokinetics pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00605
Aldh3a1Rattyrosine metabolic pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00006
Aldh3a1Rattyrosinemia type I pathway  ISOALDH3A1 (Homo sapiens)10402751 SMPDBSMP:00218
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Imported Annotations - KEGG (archival)

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Reference Title
Reference Citation
1. Preliminary characterization of the rat class 3 aldehyde dehydrogenase gene. Asman DC, etal., Adv Exp Med Biol 1993;328:81-6.
2. Constitutive expression of class 3 aldehyde dehydrogenase in cultured rat corneal epithelium. Boesch JS, etal., J Biol Chem. 1996 Mar 1;271(9):5150-7.
3. The negative regulation of the rat aldehyde dehydrogenase 3 gene by glucocorticoids: involvement of a single imperfect palindromic glucocorticoid responsive element. Falkner KC, etal., Mol Pharmacol. 1999 Apr;55(4):649-57.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Aldehyde dehydrogenase activity and large vessel disease in diabetes mellitus. A preliminary study. Jerntorp P, etal., Diabetes. 1986 Mar;35(3):291-4.
7. Cloning and complete nucleotide sequence of a full-length cDNA encoding a catalytically functional tumor-associated aldehyde dehydrogenase. Jones DE Jr, etal., Proc Natl Acad Sci U S A 1988 Mar;85(6):1782-6.
8. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
9. Persistent induction of hepatic and pulmonary phase II enzymes by 3-methylcholanthrene in rats. Kondraganti SR, etal., Toxicol Sci. 2008 Apr;102(2):337-44. Epub 2008 Jan 17.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Inhibition of cytosolic class 3 aldehyde dehydrogenase by antisense oligonucleotides in rat hepatoma cells. Muzio G, etal., Chem Biol Interact. 2001 Jan 30;130-132(1-3):219-25.
12. Antisense oligonucleotides against aldehyde dehydrogenase 3 inhibit hepatoma cell proliferation by affecting MAP kinases. Muzio G, etal., Chem Biol Interact. 2003 Feb 1;143-144:37-43.
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Acute-phase response to benzopyrene and induction of rat ALDH3A1. Pappas P, etal., Chem Biol Interact. 2003 Feb 1;143-144:55-62.
15. Anti-inflammatory agents and inducibility of hepatic drug metabolism. Pappas P, etal., Eur J Drug Metab Pharmacokinet. 1998 Oct-Dec;23(4):457-60.
16. Zoxazolamine-induced paralysis in two rat substrains: differences in hepatic drug metabolism. Pappas P, etal., Eur J Drug Metab Pharmacokinet. 1998 Oct-Dec;23(4):461-7.
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
19. Aldehyde dehydrogenase 3 gene regulation: studies on constitutive and hypoxia-modulated expression. Reisdorph R and Lindahl R, Chem Biol Interact. 2001 Jan 30;130-132(1-3):227-33.
20. GOA pipeline RGD automated data pipeline
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PMID:742739   PMID:1737758   PMID:2091023   PMID:2713359   PMID:3284529   PMID:4015840   PMID:8509394   PMID:9095201   PMID:10376761   PMID:11784860   PMID:12610736   PMID:15489334  
PMID:17530188   PMID:22664934   PMID:25286108   PMID:26674287  



Aldh3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,392,464 - 46,402,151 (+)NCBIGRCr8
mRatBN7.21045,892,993 - 45,902,680 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,892,924 - 45,902,681 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,595,478 - 50,605,184 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,085,870 - 50,095,575 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,589,438 - 45,599,135 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,490,168 - 47,499,855 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,490,153 - 47,499,876 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,265,007 - 47,274,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,365,195 - 47,374,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,378,817 - 47,388,503 (+)NCBI
Celera1045,146,398 - 45,156,083 (+)NCBICelera
Cytogenetic Map10q22NCBI
ALDH3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,737,984 - 19,748,298 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,737,984 - 19,748,943 (-)EnsemblGRCh38hg38GRCh38
GRCh371719,641,297 - 19,651,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361719,581,889 - 19,592,200 (-)NCBINCBI36Build 36hg18NCBI36
Build 341719,581,891 - 19,592,200NCBI
Celera1717,054,645 - 17,065,094 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1719,020,080 - 19,030,532 (-)NCBIHuRef
CHM1_11719,650,159 - 19,660,608 (-)NCBICHM1_1
T2T-CHM13v2.01719,686,602 - 19,696,916 (-)NCBIT2T-CHM13v2.0
Aldh3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,099,336 - 61,109,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,098,363 - 61,109,247 (+)EnsemblGRCm39 Ensembl
GRCm381161,208,510 - 61,218,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,207,537 - 61,218,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,022,244 - 61,031,920 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,024,940 - 61,034,609 (+)NCBIMGSCv36mm8
MGSCv361161,638,438 - 61,648,107 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Aldh3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546796,140 - 105,738 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546796,140 - 105,738 (+)NCBIChiLan1.0ChiLan1.0
ALDH3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,728,524 - 54,738,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11759,540,244 - 59,550,581 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01731,384,740 - 31,395,719 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11736,531,830 - 36,539,428 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1736,531,720 - 36,542,504 (+)Ensemblpanpan1.1panPan2
ALDH3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1540,466,237 - 40,474,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl540,466,237 - 40,474,457 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,608,116 - 40,616,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0540,572,237 - 40,580,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl540,572,237 - 40,580,458 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1540,543,623 - 40,551,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0540,489,252 - 40,497,281 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0540,681,916 - 40,689,952 (+)NCBIUU_Cfam_GSD_1.0
Aldh3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560260,509,720 - 60,516,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688170,951 - 77,839 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688171,047 - 77,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALDH3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,897,496 - 59,905,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,895,476 - 59,905,900 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,639,844 - 62,660,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALDH3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11618,302,145 - 18,312,768 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1618,302,142 - 18,312,756 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660592,534,705 - 2,545,299 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Aldh3a1
61 total Variants

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:118
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000003182
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 66 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat

1 to 10 of 66 rows
RH132563  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81046,401,809 - 46,402,115 (+)Marker Load Pipeline
mRatBN7.21045,902,338 - 45,902,644 (+)MAPPERmRatBN7.2
Rnor_6.01047,499,514 - 47,499,819NCBIRnor6.0
Rnor_5.01047,274,351 - 47,274,656UniSTSRnor5.0
RGSC_v3.41047,374,539 - 47,374,844UniSTSRGSC3.4
Celera1045,155,742 - 45,156,047UniSTS
Cytogenetic Map10q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 31 95 39 43 12 25 12 6 130 74 80 27 49 31



Ensembl Acc Id: ENSRNOT00000003182   ⟹   ENSRNOP00000003182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1045,892,924 - 45,902,680 (+)Ensembl
Rnor_6.0 Ensembl1047,490,153 - 47,499,876 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107161   ⟹   ENSRNOP00000078369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1045,892,953 - 45,902,681 (+)Ensembl
RefSeq Acc Id: NM_031972   ⟹   NP_114178
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81046,392,464 - 46,402,151 (+)NCBI
mRatBN7.21045,892,993 - 45,902,680 (+)NCBI
Rnor_6.01047,490,168 - 47,499,855 (+)NCBI
Rnor_5.01047,265,007 - 47,274,692 (+)NCBI
RGSC_v3.41047,365,195 - 47,374,880 (+)RGD
Celera1045,146,398 - 45,156,083 (+)RGD
Sequence:
Protein RefSeqs NP_114178 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40713 (Get FASTA)   NCBI Sequence Viewer  
  AAA40722 (Get FASTA)   NCBI Sequence Viewer  
  AAH70924 (Get FASTA)   NCBI Sequence Viewer  
  EDM04678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003182
GenBank Protein P11883 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_114178   ⟸   NM_031972
- UniProtKB: P11883 (UniProtKB/Swiss-Prot),   A6HF73 (UniProtKB/TrEMBL),   A0A8L2Q0S9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003182   ⟸   ENSRNOT00000003182
Ensembl Acc Id: ENSRNOP00000078369   ⟸   ENSRNOT00000107161
Aldehyde dehydrogenase

Name Modeler Protein Id AA Range Protein Structure
AF-P11883-F1-model_v2 AlphaFold P11883 1-453 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697259
Promoter ID:EPDNEW_R7784
Type:single initiation site
Name:Aldh3a1_1
Description:aldehyde dehydrogenase 3 family, member A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01047,490,289 - 47,490,349EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-24823 BioCyc
Ensembl Genes ENSRNOG00000002331 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000003182 ENTREZGENE
Gene3D-CATH Aldehyde Dehydrogenase, Chain A, domain 1 UniProtKB/Swiss-Prot
  Aldehyde Dehydrogenase, Chain A, domain 2 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7096634 IMAGE-MGC_LOAD
InterPro Ald_DH/histidinol_DH UniProtKB/Swiss-Prot
  Ald_DH_C UniProtKB/Swiss-Prot
  Ald_DH_CS_CYS UniProtKB/Swiss-Prot
  Ald_DH_CS_GLU UniProtKB/Swiss-Prot
  Ald_DH_N UniProtKB/Swiss-Prot
  Aldehyde_DH_dom UniProtKB/Swiss-Prot
  Aldehyde_DH_NAD(P) UniProtKB/Swiss-Prot
KEGG Report rno:25375 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91608 IMAGE-MGC_LOAD
NCBI Gene 25375 ENTREZGENE
PANTHER ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING UniProtKB/Swiss-Prot
  PTHR43570 UniProtKB/Swiss-Prot
Pfam Aldedh UniProtKB/Swiss-Prot
PharmGKB ALDH3A1 RGD
PhenoGen Aldh3a1 PhenoGen
PIRSF ALDH UniProtKB/Swiss-Prot
PROSITE ALDEHYDE_DEHYDR_CYS UniProtKB/Swiss-Prot
  ALDEHYDE_DEHYDR_GLU UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002331 RatGTEx
Superfamily-SCOP SSF53720 UniProtKB/Swiss-Prot
TIGR TC231508
UniProt A0A8I5ZKQ2_RAT UniProtKB/TrEMBL
  A0A8L2Q0S9 ENTREZGENE, UniProtKB/TrEMBL
  A6HF73 ENTREZGENE, UniProtKB/TrEMBL
  AL3A1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-12 Aldh3a1  aldehyde dehydrogenase 3 family, member A1  Aldh3a1  aldehyde dehydrogenase family 3, member A1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Aldh3a1  aldehyde dehydrogenase family 3, member A1     Aldehyde dehydrogenase family 3, subfamily A1  Name updated 629478 APPROVED
2001-06-12 Aldh3  Aldehyde dehydrogenase class 3      Symbol and Name withdrawn 62408 WITHDRAWN
2001-06-12 Aldh3a1  Aldehyde dehydrogenase family 3, subfamily A1      Symbol and Name updated to reflect Human and Mouse nomenclature 62408 APPROVED

Note Type Note Reference
gene_disease expressed during hepatocarcinogenesis 632185
gene_function has aldehyde dehydrogenase activity in vitro 632185
gene_product member of the aldehyde dehydrogenase family 632185