Rrm2 (ribonucleotide reductase regulatory subunit M2) - Rat Genome Database

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Gene: Rrm2 (ribonucleotide reductase regulatory subunit M2) Rattus norvegicus
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Symbol: Rrm2
Name: ribonucleotide reductase regulatory subunit M2
RGD ID: 1598310
Description: Predicted to enable ferric iron binding activity; protein homodimerization activity; and ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Involved in positive regulation of cell population proliferation and pyrimidine nucleobase metabolic process. Located in nuclear envelope. Used to study endometrial adenocarcinoma. Biomarker of urinary bladder cancer. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC116120; ribonucleoside-diphosphate reductase subunit M2; Ribonucleotide reductase 2; ribonucleotide reductase M2; ribonucleotide reductase M2 (mapped); ribonucleotide reductase M2 polypeptide; ribonucleotide reductase small chain; ribonucleotide reductase small subunit; Rrm2_mapped
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8647,044,755 - 47,075,370 (+)NCBIGRCr8
mRatBN7.2641,339,858 - 41,346,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,340,557 - 41,346,773 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,660,659 - 41,666,878 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,975,466 - 41,981,683 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,408,612 - 41,414,829 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,884,627 - 43,890,818 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,884,678 - 43,889,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,756,160 - 60,762,351 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,350,541 - 42,356,748 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera640,627,438 - 40,633,641 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Rrm2Ratbreast carcinoma  ISORRM2 (Homo sapiens)5133696protein:increased expression:tumor (human)RGD 
Rrm2RatCOVID-19  ISORRM2 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Rrm2Ratendometrial adenocarcinoma  IAGP 2324953DNA:amplification (rat)RGD 
Rrm2Ratlung non-small cell carcinoma treatmentISORRM2 (Homo sapiens)127229933 RGD 
Rrm2Ratpancreatic cancer  ISORRM2 (Homo sapiens)2324950 RGD 
Rrm2Raturinary bladder cancer  IEP 5133688mRNA:increased expression:bladder (rat)RGD 
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Original Reference(s)
Rrm2Ratgenetic disease  ISORRM2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
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Original Reference(s)
Rrm2RatAnimal Disease Models  ISORRM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772
Rrm2RatColorectal Neoplasms  ISORRM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15814641
Rrm2Rathepatocellular carcinoma  ISORRM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18230555 and PMID:28284560
Rrm2Ratlung adenocarcinoma  ISORRM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772
Rrm2Ratpolycystic ovary syndrome  ISORRM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21411543

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Original Reference(s)
Rrm2Rat(-)-demecolcine decreases expressionISORRM2 (Homo sapiens)6480464Demecolcine results in decreased expression of RRM2 mRNACTDPMID:23649840
Rrm2Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane decreases expressionISORRM2 (Homo sapiens)6480464o and p'-DDT results in decreased expression of RRM2 mRNACTDPMID:18204070
Rrm2Rat1,1-dichloroethene increases expressionISORrm2 (Mus musculus)6480464vinylidene chloride results in increased expression of RRM2 mRNACTDPMID:26682919
Rrm2Rat1-chloro-2,4-dinitrobenzene increases expressionISORrm2 (Mus musculus)6480464Dinitrochlorobenzene results in increased expression of RRM2 mRNACTDPMID:21404309
Rrm2Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of RRM2 mRNACTDPMID:30723492
Rrm2Rat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of RRM2 mRNACTDPMID:17351261
Rrm2Rat17beta-estradiol increases expressionISORRM2 (Homo sapiens)6480464Estradiol results in increased expression of RRM2 mRNACTDPMID:16474171 more ...
Rrm2Rat17beta-estradiol decreases expressionISORrm2 (Mus musculus)6480464Estradiol results in decreased expression of RRM2 mRNACTDPMID:39298647
Rrm2Rat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of RRM2 mRNACTDPMID:32741896
Rrm2Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of RRM2 mRNACTDPMID:32145629
Rrm2Rat17beta-estradiol multiple interactionsISORRM2 (Homo sapiens)6480464[Progesterone co-treated with Estradiol] results in decreased expression of RRM2 mRNACTDPMID:17404688
Rrm2Rat17beta-estradiol affects expressionISORrm2 (Mus musculus)6480464Estradiol affects the expression of RRM2 mRNACTDPMID:15598610
Rrm2Rat17beta-estradiol decreases expressionISORRM2 (Homo sapiens)6480464Estradiol results in decreased expression of RRM2 mRNACTDPMID:20106945
Rrm2Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of RRM2 mRNACTDPMID:32741896
Rrm2Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORrm2 (Mus musculus)64804642 more ...CTDPMID:25510870 and PMID:32352317
Rrm2Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORRM2 (Homo sapiens)64804642 more ...CTDPMID:19095052
Rrm2Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORrm2 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Rrm2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORrm2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of RRM2 mRNACTDPMID:19770486 and PMID:25270620
Rrm2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RRM2 mRNACTDPMID:34747641
Rrm2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RRM2 mRNACTDPMID:32109520

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Biological Process
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Original Reference(s)
Rrm2Rat2'-deoxyribonucleotide biosynthetic process involved_inISORRM2 (Homo sapiens)1624291 PMID:16376858RGDPMID:16376858
Rrm2Rat2'-deoxyribonucleotide biosynthetic process involved_inISORrm2 (Mus musculus)1624291 PMID:12578384RGDPMID:12578384
Rrm2Ratblastocyst development acts_upstream_ofISORrm2 (Mus musculus)1624291 PMID:26902285RGDPMID:26902285
Rrm2Ratdeoxyribonucleotide biosynthetic process involved_inISORrm2 (Mus musculus)1624291 PMID:19176520RGDPMID:19176520
Rrm2Ratdeoxyribonucleotide biosynthetic process involved_inIEAUniProtKB-KW:KW-02151600115GO_REF:0000043UniProtGO_REF:0000043
Rrm2Ratdeoxyribonucleotide biosynthetic process involved_inIEAInterPro:IPR000358 and InterPro:IPR0339091600115GO_REF:0000002InterProGO_REF:0000002
Rrm2Ratdeoxyribonucleotide biosynthetic process involved_inIBAMGI:2155865 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rrm2Ratdeoxyribonucleotide biosynthetic process involved_inISSUniProtKB:P111571600115GO_REF:0000024UniProtGO_REF:0000024
Rrm2Ratdeoxyribonucleotide metabolic process acts_upstream_of_or_withinISORrm2 (Mus musculus)1624291 PMID:12655059RGDPMID:12655059
Rrm2Ratnucleobase-containing small molecule metabolic process involved_inIEAARBA:ARBA000276811600115GO_REF:0000117UniProtGO_REF:0000117
Rrm2Ratpositive regulation of cell population proliferation  IMP 2316866 RGD 
Rrm2Ratpositive regulation of G1/S transition of mitotic cell cycle involved_inISORRM2 (Homo sapiens)1624291 PMID:24253041RGDPMID:24253041
Rrm2Ratprotein heterotetramerization involved_inISORrm2 (Mus musculus)1624291UniProtKB:P07742 and PMID:19176520RGDPMID:19176520
Rrm2Ratpyrimidine nucleobase metabolic process  IEP 5133695orotic acidRGD 
Rrm2Ratribonucleoside diphosphate metabolic process involved_inISORrm2 (Mus musculus)1624291 PMID:12578384RGDPMID:12578384
Rrm2Ratribonucleoside diphosphate metabolic process involved_inISORRM2 (Homo sapiens)1624291 PMID:16376858RGDPMID:16376858
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Cellular Component
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Original Reference(s)
Rrm2Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Rrm2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Rrm2Ratcytosol located_inISORRM2 (Homo sapiens)1624291 PMID:18997010RGDPMID:18997010
Rrm2Ratcytosol is_active_inIBAMGI:98181 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rrm2Ratcytosol located_inISORRM2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Rrm2Ratnuclear envelope  IDA 5133697 RGD 
Rrm2Ratnucleoplasm located_inISORRM2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Rrm2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Rrm2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Rrm2Ratribonucleoside-diphosphate reductase complex part_ofISORrm2 (Mus musculus)1624291 PMID:19176520 more ...RGDPMID:19176520 more ...
Rrm2Ratribonucleoside-diphosphate reductase complex part_ofISORRM2 (Homo sapiens)1624291 PMID:22632967RGDPMID:22632967
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Molecular Function
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Original Reference(s)
Rrm2Ratferric iron binding enablesISORrm2 (Mus musculus)1624291 PMID:8876648RGDPMID:8876648
Rrm2Ratidentical protein binding enablesISORrm2 (Mus musculus)1624291 PMID:8130196RGDPMID:8130196
Rrm2Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Rrm2Ratoxidoreductase activity enablesIEAInterPro:IPR0123481600115GO_REF:0000002InterProGO_REF:0000002
Rrm2Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Rrm2Ratprotein binding enablesISORRM2 (Homo sapiens)1624291UniProtKB:O00560 more ...RGDPMID:17726094 more ...
Rrm2Ratprotein binding enablesISORrm2 (Mus musculus)1624291PR:P07742 more ...RGDPMID:12655059 more ...
Rrm2Ratprotein homodimerization activity enablesISORrm2 (Mus musculus)1624291 PMID:8876648RGDPMID:8876648
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor enablesISORrm2 (Mus musculus)1624291 PMID:16829694 and PMID:19176520RGDPMID:16829694 and PMID:19176520
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor contributes_toISORrm2 (Mus musculus)1624291 PMID:16861739 more ...RGDPMID:16861739 more ...
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor enablesIBAMGI:2155865 and PANTHER:PTN0011581611600115GO_REF:0000033GO_CentralGO_REF:0000033
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor enablesIEARHEA:232521600115GO_REF:0000116RHEAGO_REF:0000116
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor enablesIEAEC:1.17.4.11600115GO_REF:0000003UniProtGO_REF:0000003
Rrm2Ratribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor enablesISSUniProtKB:P111571600115GO_REF:0000024UniProtGO_REF:0000024
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Imported Annotations - SMPDB

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Original Reference(s)
Rrm2Ratadenine phoshoribosyltransferase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00535
Rrm2Ratadenosine monophosphate deaminase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00537
Rrm2Ratadenylosuccinate lyase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00167
Rrm2RatAICA-ribosuria pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00168
Rrm2Ratazathioprine pharmacodynamics pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00427
Rrm2Ratbeta-ureidopropionase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00172
Rrm2Ratdihydropyrimidinase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00178
Rrm2Ratgemcitabine pharmacodynamics pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00446
Rrm2Ratgemcitabine pharmacokinetics pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00603
Rrm2RatKelley-Seegmiller syndrome pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00365
Rrm2RatLesch-Nyhan syndrome pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00364
Rrm2Ratmercaptopurine pharmacodynamics pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00428
Rrm2Ratmitochondrial neurogastrointestinal encephalopathy syndrome pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00202
Rrm2Ratmolybdenum cofactor deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00203
Rrm2Ratorotic aciduria 1 pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00219
Rrm2Ratpurine metabolic pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00050
Rrm2Ratpurine nucleoside phosphorylase deficiency pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00210
Rrm2Ratpyrimidine metabolic pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00046
Rrm2Rattioguanine pharmacodynamics pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00430
Rrm2Ratxanthinuria type I pathway  ISORRM2 (Homo sapiens)10402751 SMPDBSMP:00512
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Rrm2Ratglutathione metabolic pathway  IEA 6907045 KEGGrno:00480
Rrm2Ratp53 signaling pathway   IEA 6907045 KEGGrno:04115
Rrm2Ratpurine metabolic pathway  IEA 6907045 KEGGrno:00230
Rrm2Ratpyrimidine metabolic pathway  IEA 6907045 KEGGrno:00240

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#
Reference Title
Reference Citation
1. Oncogene amplification in the proximal part of chromosome 6 in rat endometrial adenocarcinoma as revealed by combined BAC/PAC FISH, chromosome painting, zoo-FISH, and allelotyping. Adamovic T, etal., Genes Chromosomes Cancer. 2005 Oct;44(2):139-53.
2. Tumor BRCA1, RRM1 and RRM2 mRNA expression levels and clinical response to first-line gemcitabine plus docetaxel in non-small-cell lung cancer patients. Boukovinas I, etal., PLoS One. 2008;3(11):e3695. doi: 10.1371/journal.pone.0003695. Epub 2008 Nov 11.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Replication of the hepatitis B virus requires a calcium-dependent HBx-induced G1 phase arrest of hepatocytes. Gearhart TL and Bouchard MJ, Virology. 2010 Nov 10;407(1):14-25. Epub 2010 Aug 16.
5. Potent siRNA inhibitors of ribonucleotide reductase subunit RRM2 reduce cell proliferation in vitro and in vivo. Heidel JD, etal., Clin Cancer Res. 2007 Apr 1;13(7):2207-15.
6. Cross-species comparison of orthologous gene expression in human bladder cancer and carcinogen-induced rodent models. Lu Y, etal., Am J Transl Res. 2010 Sep 20;3(1):8-27.
7. The regulation of ribonucleoside diphosphate reductase by the tumor promoter orotic acid in normal rat liver in vivo. Manjeshwar S, etal., Mol Carcinog. 1999 Mar;24(3):188-96.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. Gemcitabine-based chemogene therapy for pancreatic cancer using Ad-dCK::UMK GDEPT and TS/RR siRNA strategies. Rejiba S, etal., Neoplasia. 2009 Jul;11(7):637-50.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Immunohistochemical detection of ribonucleotide reductase in human breast-tumors. Saeki T, etal., Int J Oncol. 1995 Mar;6(3):523-9.
15. Evidence that mammalian ribonucleotide reductase is a nuclear membrane associated glycoprotein. Sikorska M, etal., Biochem Cell Biol. 1990 May;68(5):880-8.
16. Changes in the cytoplasmic and nuclear activities of the ribonucleotide reductase holoenzyme and its subunits in regenerating liver cells in normal and thyroparathyroidectomized rats. Youdale T, etal., Can J Biochem Cell Biol. 1984 Sep;62(9):914-9.
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PMID:2684652   PMID:8130196   PMID:8612737   PMID:8876648   PMID:12477932   PMID:12655059   PMID:15489334   PMID:16829694   PMID:16861739   PMID:19176520   PMID:21925507   PMID:26902285  
PMID:34868394  



Rrm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8647,044,755 - 47,075,370 (+)NCBIGRCr8
mRatBN7.2641,339,858 - 41,346,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,340,557 - 41,346,773 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,660,659 - 41,666,878 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,975,466 - 41,981,683 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,408,612 - 41,414,829 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,884,627 - 43,890,818 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,884,678 - 43,889,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,756,160 - 60,762,351 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,350,541 - 42,356,748 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera640,627,438 - 40,633,641 (+)NCBICelera
Cytogenetic Map6q16NCBI
RRM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,122,568 - 10,211,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,120,698 - 10,211,725 (+)EnsemblGRCh38hg38GRCh38
GRCh37210,262,695 - 10,351,136 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,180,184 - 10,188,074 (+)NCBINCBI36Build 36hg18NCBI36
Build 34210,213,332 - 10,221,220NCBI
Celera210,178,748 - 10,187,595 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,113,982 - 10,122,746 (+)NCBIHuRef
CHM1_1210,192,499 - 10,201,334 (+)NCBICHM1_1
T2T-CHM13v2.0210,151,280 - 10,239,549 (+)NCBIT2T-CHM13v2.0
Rrm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391224,758,253 - 24,764,145 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1224,758,240 - 24,764,145 (+)EnsemblGRCm39 Ensembl
GRCm381224,708,254 - 24,714,146 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,708,241 - 24,714,146 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,393,119 - 25,399,011 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361225,297,362 - 25,303,186 (+)NCBIMGSCv36mm8
Celera1226,164,274 - 26,170,181 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.5NCBI
Rrm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,476,954 - 5,483,049 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,477,097 - 5,481,422 (+)NCBIChiLan1.0ChiLan1.0
RRM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212116,388,124 - 116,396,941 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A116,392,095 - 116,400,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,119,508 - 10,128,318 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,275,598 - 10,284,640 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,275,598 - 10,284,640 (+)Ensemblpanpan1.1panPan2
RRM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,106,515 - 7,113,868 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,104,961 - 7,122,939 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,033,016 - 7,052,810 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,204,147 - 7,223,928 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,204,143 - 7,220,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,095,785 - 7,115,556 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,098,343 - 7,118,126 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,112,515 - 7,132,291 (+)NCBIUU_Cfam_GSD_1.0
Rrm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,592,999 - 51,596,629 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365326,348,041 - 6,390,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,347,819 - 126,365,644 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,357,198 - 126,367,145 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RRM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,512,690 - 97,519,734 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1497,512,832 - 97,521,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604514,794,522 - 14,803,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rrm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,985,620 - 4,990,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,984,353 - 4,990,187 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rrm2
35 total Variants

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:98
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000011163
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat

1 to 10 of 29 rows
RH128375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,879,602 - 23,879,800 (-)MAPPERmRatBN7.2
mRatBN7.2641,346,372 - 41,346,570 (+)MAPPERmRatBN7.2
Rnor_6.0643,890,417 - 43,890,614NCBIRnor6.0
Rnor_6.01925,393,828 - 25,394,025NCBIRnor6.0
Rnor_5.01936,370,006 - 36,370,203UniSTSRnor5.0
Rnor_5.0660,761,950 - 60,762,147UniSTSRnor5.0
Celera1923,428,502 - 23,428,699UniSTS
Celera640,633,240 - 40,633,437UniSTS
Cytogenetic Map6q16UniSTS
RH137293  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,345,135 - 41,345,454 (+)MAPPERmRatBN7.2
mRatBN7.21923,880,707 - 23,880,923 (-)MAPPERmRatBN7.2
Rnor_6.0643,889,191 - 43,889,509NCBIRnor6.0
Rnor_6.01925,392,702 - 25,392,917NCBIRnor6.0
Rnor_5.01936,368,880 - 36,369,095UniSTSRnor5.0
Rnor_5.0660,760,724 - 60,761,042UniSTSRnor5.0
Celera1923,429,607 - 23,429,822UniSTS
Celera640,632,004 - 40,632,322UniSTS
Cytogenetic Map6q16UniSTS
PMC207566P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,881,059 - 23,881,293 (-)MAPPERmRatBN7.2
Rnor_6.01925,392,332 - 25,392,565NCBIRnor6.0
Rnor_5.01936,368,510 - 36,368,743UniSTSRnor5.0
RGSC_v3.41925,564,412 - 25,564,645UniSTSRGSC3.4
Celera1923,429,959 - 23,430,192UniSTS
Cytogenetic Map6q16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000091551   ⟹   ENSRNOP00000073334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,340,557 - 41,346,773 (+)Ensembl
Rnor_6.0 Ensembl643,884,678 - 43,889,515 (+)Ensembl
RefSeq Acc Id: NM_001025740   ⟹   NP_001020911
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,069,167 - 47,075,370 (+)NCBI
mRatBN7.2641,340,569 - 41,346,774 (+)NCBI
Rnor_6.0643,884,627 - 43,890,818 (+)NCBI
Rnor_5.0660,756,160 - 60,762,351 (+)NCBI
RGSC_v3.4642,350,541 - 42,356,748 (+)RGD
Celera640,627,438 - 40,633,641 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112489   ⟹   XP_038968417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,066,082 - 47,075,370 (+)NCBI
mRatBN7.2641,339,858 - 41,346,774 (+)NCBI
RefSeq Acc Id: XM_063262073   ⟹   XP_063118143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,044,755 - 47,075,370 (+)NCBI
Protein RefSeqs NP_001020911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968417 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118143 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99082 (Get FASTA)   NCBI Sequence Viewer  
  EDM03186 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073334
GenBank Protein Q4KLN6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020911   ⟸   NM_001025740
- UniProtKB: Q4KLN6 (UniProtKB/Swiss-Prot),   A6HAY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073334   ⟸   ENSRNOT00000091551
RefSeq Acc Id: XP_038968417   ⟸   XM_039112489
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R734 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118143   ⟸   XM_063262073
- Peptide Label: isoform X2
- UniProtKB: Q4KLN6 (UniProtKB/Swiss-Prot),   A6HAY1 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLN6-F1-model_v2 AlphaFold Q4KLN6 1-390 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694523
Promoter ID:EPDNEW_R5046
Type:multiple initiation site
Name:Rrm2_1
Description:ribonucleotide reductase regulatory subunit M2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0643,884,618 - 43,884,678EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-38023 BioCyc
BioCyc Pathway PWY-7184 [pyrimidine deoxyribonucleotides de novo biosynthesis I] BioCyc
  PWY-7210 [pyrimidine deoxyribonucleotides biosynthesis from CTP] BioCyc
  PWY-7226 [guanosine deoxyribonucleotides de novo biosynthesis I] BioCyc
  PWY-7227 [adenosine deoxyribonucleotides de novo biosynthesis I] BioCyc
BioCyc Pathway Image PWY-7184 BioCyc
  PWY-7210 BioCyc
  PWY-7226 BioCyc
  PWY-7227 BioCyc
Ensembl Genes ENSRNOG00000054286 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000091551 ENTREZGENE
Gene3D-CATH 1.10.620.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7443729 IMAGE-MGC_LOAD
InterPro Ferritin-like_SF UniProtKB/Swiss-Prot
  RNR-like UniProtKB/Swiss-Prot
  RNR_small UniProtKB/Swiss-Prot
  RNR_small_AS UniProtKB/Swiss-Prot
  RNR_small_fam UniProtKB/Swiss-Prot
KEGG Report rno:362720 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116120 IMAGE-MGC_LOAD
NCBI Gene 362720 ENTREZGENE
PANTHER PTHR23409 UniProtKB/Swiss-Prot
  RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 UniProtKB/Swiss-Prot
Pfam Ribonuc_red_sm UniProtKB/Swiss-Prot
PharmGKB RRM2 RGD
PhenoGen Rrm2 PhenoGen
PROSITE RIBORED_SMALL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000054286 RatGTEx
Superfamily-SCOP SSF47240 UniProtKB/Swiss-Prot
UniProt A0A8L2R734 ENTREZGENE, UniProtKB/TrEMBL
  A6HAY1 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLN6 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-21 Rrm2  ribonucleotide reductase regulatory subunit M2  Rrm2  ribonucleotide reductase M2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-13   ribonucleotide reductase M2  Rrm2  ribonucleotide reductase M2 (mapped)  Name updated 737654 APPROVED
2007-04-12 Rrm2  ribonucleotide reductase M2 (mapped)  Rrm2_mapped  ribonucleotide reductase M2 (mapped)  Data merged from RGD:3605 737654 APPROVED
2006-11-20 Rrm2  ribonucleotide reductase M2 (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Rrm2_mapped  ribonucleotide reductase M2 (mapped)      Symbol and Name updated 1556543 APPROVED
2002-06-10 Rrm2  Ribonucleotide reductase 2      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_process human homolog is required for formation of deoxyribonucleotides from ribonucleotides 704404