Stambpl1 (STAM binding protein-like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Stambpl1 (STAM binding protein-like 1) Rattus norvegicus
Analyze
Symbol: Stambpl1
Name: STAM binding protein-like 1
RGD ID: 1583011
Description: Predicted to enable K63-linked deubiquitinase activity. Predicted to be involved in cellular response to L-leucine and positive regulation of TORC1 signaling. Predicted to be active in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AMSH-like protease; hypothetical protein LOC687696; LOC687696; similar to AMSH-family protein; uncharacterized protein LOC687696
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,095,695 - 241,158,225 (+)NCBIGRCr8
mRatBN7.21231,699,620 - 231,745,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,699,995 - 231,745,032 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,097,547 - 240,136,026 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,019,419 - 247,057,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,857,502 - 239,895,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,490,125 - 252,536,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,497,452 - 252,536,104 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01259,714,296 - 259,759,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1228,820,260 - 228,858,741 (+)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stambpl1Ratautoimmune lymphoproliferative syndrome  ISOSTAMBPL1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10875918 more ...
Stambpl1RatPTEN hamartoma tumor syndrome  ISOSTAMBPL1 (Homo sapiens)8554872ClinVar Annotator: match by term: PTEN hamartoma tumor syndromeClinVarPMID:18456716 more ...

1 to 20 of 100 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stambpl1Rat(-)-demecolcine decreases expressionISOSTAMBPL1 (Homo sapiens)6480464Demecolcine results in decreased expression of STAMBPL1 mRNACTDPMID:23649840
Stambpl1Rat(-)-epigallocatechin 3-gallate multiple interactionsISOSTAMBPL1 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of STAMBPL1 mRNACTDPMID:22079256
Stambpl1Rat(1->4)-beta-D-glucan multiple interactionsISOStambpl1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of STAMBPL1 mRNACTDPMID:36331819
Stambpl1Rat1,1-dichloroethene increases expressionISOStambpl1 (Mus musculus)6480464vinylidene chloride results in increased expression of STAMBPL1 mRNACTDPMID:26682919
Stambpl1Rat17beta-estradiol multiple interactionsISOSTAMBPL1 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in decreased expression of STAMBPL1 mRNACTDPMID:20660070
Stambpl1Rat17beta-estradiol increases expressionISOSTAMBPL1 (Homo sapiens)6480464Estradiol results in increased expression of STAMBPL1 mRNACTDPMID:31614463
Stambpl1Rat2,2',5,5'-tetrachlorobiphenyl increases expressionISOSTAMBPL1 (Homo sapiens)64804642 more ...CTDPMID:36804509
Stambpl1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of STAMBPL1 mRNACTDPMID:32109520
Stambpl1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of STAMBPL1 mRNACTDPMID:33387578
Stambpl1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOStambpl1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of STAMBPL1 mRNACTDPMID:21570461
Stambpl1Rat2-butoxyethanol decreases expressionISOStambpl1 (Mus musculus)6480464n-butoxyethanol results in decreased expression of STAMBPL1 mRNACTDPMID:19812364
Stambpl1Rat2-hydroxypropanoic acid decreases expressionISOSTAMBPL1 (Homo sapiens)6480464Lactic Acid results in decreased expression of STAMBPL1 mRNACTDPMID:30851411
Stambpl1Rat2-methylcholine affects expressionISOSTAMBPL1 (Homo sapiens)6480464beta-methylcholine affects the expression of STAMBPL1 mRNACTDPMID:21179406
Stambpl1Rat2-palmitoylglycerol increases expressionISOSTAMBPL1 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of STAMBPL1 mRNACTDPMID:37199045
Stambpl1Rat4,4'-sulfonyldiphenol decreases expressionISOStambpl1 (Mus musculus)6480464bisphenol S results in decreased expression of STAMBPL1 mRNACTDPMID:39298647
Stambpl1Rat4-hydroxyphenyl retinamide increases expressionISOStambpl1 (Mus musculus)6480464Fenretinide results in increased expression of STAMBPL1 mRNACTDPMID:28973697
Stambpl1Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of STAMBPL1 mRNACTDPMID:31881176
Stambpl1Rataflatoxin B1 increases expressionISOSTAMBPL1 (Homo sapiens)6480464Aflatoxin B1 results in increased expression of STAMBPL1 mRNACTDPMID:22100608
Stambpl1Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of STAMBPL1 mRNACTDPMID:33354967
Stambpl1Rataflatoxin B1 increases methylationISOSTAMBPL1 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of STAMBPL1 geneCTDPMID:27153756

1 to 20 of 100 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stambpl1Ratcellular response to L-leucine involved_inISOSTAMBPL1 (Homo sapiens)1624291 PMID:35114100RGDPMID:35114100
Stambpl1Ratcellular response to L-leucine involved_inIEAUniProtKB:Q96FJ0 and ensembl:ENSP000003609941600115GO_REF:0000107EnsemblGO_REF:0000107
Stambpl1Ratpositive regulation of TORC1 signaling involved_inIBAPANTHER:PTN002658510 and UniProtKB:Q96FJ01600115GO_REF:0000033GO_CentralGO_REF:0000033
Stambpl1Ratpositive regulation of TORC1 signaling involved_inIEAUniProtKB:Q96FJ0 and ensembl:ENSP000003609941600115GO_REF:0000107EnsemblGO_REF:0000107
Stambpl1Ratpositive regulation of TORC1 signaling involved_inISOSTAMBPL1 (Homo sapiens)1624291 PMID:35114100RGDPMID:35114100
Stambpl1Ratprotein deubiquitination involved_inIEAInterPro:IPR0440981600115GO_REF:0000002InterProGO_REF:0000002
Stambpl1Ratprotein deubiquitination involved_inIEAARBA:ARBA000278791600115GO_REF:0000117UniProtGO_REF:0000117
Stambpl1Ratprotein K63-linked deubiquitination involved_inIEAInterPro:IPR0440981600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stambpl1Ratendosome is_active_inIBAPANTHER:PTN000310308 and UniProtKB:Q5PNU31600115GO_REF:0000033GO_CentralGO_REF:0000033
Stambpl1Ratmembrane is_active_inIBAMGI:1917777 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stambpl1RatK63-linked deubiquitinase activity enablesISOSTAMBPL1 (Homo sapiens)1624291 PMID:34425109 and PMID:35114100RGDPMID:34425109 and PMID:35114100
Stambpl1RatK63-linked deubiquitinase activity enablesIEAInterPro:IPR0440981600115GO_REF:0000002InterProGO_REF:0000002
Stambpl1RatK63-linked deubiquitinase activity enablesIEAUniProtKB:Q96FJ0 and ensembl:ENSP000003609941600115GO_REF:0000107EnsemblGO_REF:0000107
Stambpl1RatK63-linked deubiquitinase activity enablesIBAPANTHER:PTN000310309 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Stambpl1Ratmetal-dependent deubiquitinase activity enablesIEAInterPro:IPR0440981600115GO_REF:0000002InterProGO_REF:0000002
Stambpl1Ratmetallopeptidase activity enablesIEAInterPro:IPR0005551600115GO_REF:0000002InterProGO_REF:0000002
Stambpl1Ratmetallopeptidase activity enablesIEAUniProtKB-KW:KW-04821600115GO_REF:0000043UniProtGO_REF:0000043
Stambpl1Ratpeptidase activity enablesIEAInterPro:IPR0005551600115GO_REF:0000002InterProGO_REF:0000002
Stambpl1Ratprotein binding enablesISOSTAMBPL1 (Homo sapiens)1624291UniProtKB:A6NEM1 more ...RGDPMID:21163940 more ...
1 to 9 of 9 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:19946888  



Stambpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,095,695 - 241,158,225 (+)NCBIGRCr8
mRatBN7.21231,699,620 - 231,745,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,699,995 - 231,745,032 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,097,547 - 240,136,026 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,019,419 - 247,057,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,857,502 - 239,895,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,490,125 - 252,536,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,497,452 - 252,536,104 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01259,714,296 - 259,759,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1228,820,260 - 228,858,741 (+)NCBICelera
Cytogenetic Map1q52NCBI
STAMBPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381088,880,245 - 88,923,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1088,879,734 - 88,975,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371090,640,002 - 90,683,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361090,630,006 - 90,673,224 (+)NCBINCBI36Build 36hg18NCBI36
Celera1084,386,859 - 84,430,089 (+)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1084,274,633 - 84,317,837 (+)NCBIHuRef
CHM1_11090,922,028 - 90,965,342 (+)NCBICHM1_1
T2T-CHM13v2.01089,763,682 - 89,807,429 (+)NCBIT2T-CHM13v2.0
Stambpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,169,629 - 34,217,733 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1934,169,629 - 34,217,733 (+)EnsemblGRCm39 Ensembl
GRCm381934,190,378 - 34,240,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,192,229 - 34,240,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv371934,266,760 - 34,314,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361934,258,267 - 34,306,325 (+)NCBIMGSCv36mm8
Celera1934,968,899 - 35,017,515 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.35NCBI
Stambpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554254,045,725 - 4,092,019 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554254,045,789 - 4,091,942 (-)NCBIChiLan1.0ChiLan1.0
STAMBPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28100,899,526 - 100,942,825 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110100,904,841 - 100,948,140 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01085,605,651 - 85,649,268 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11089,108,953 - 89,204,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1089,109,356 - 89,152,628 (+)Ensemblpanpan1.1panPan2
STAMBPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12638,665,418 - 38,693,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2638,666,915 - 38,693,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2638,433,238 - 38,444,606 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02640,250,018 - 40,278,426 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2640,250,039 - 40,278,411 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12638,119,929 - 38,148,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02637,685,244 - 37,713,613 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02638,955,577 - 38,983,896 (+)NCBIUU_Cfam_GSD_1.0
Stambpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721378,454,822 - 78,499,096 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936735293,833 - 310,539 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936735293,833 - 337,839 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAMBPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14100,798,088 - 100,859,567 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114100,798,096 - 100,859,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214109,782,799 - 109,844,285 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAMBPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1982,303,521 - 82,347,235 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604842,981,644 - 43,117,930 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stambpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479115,186,030 - 15,234,162 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479115,185,185 - 15,231,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Stambpl1
324 total Variants

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:42
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000075598
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 73 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat

1 to 10 of 73 rows
RH131941  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,744,808 - 231,745,020 (+)MAPPERmRatBN7.2
Rnor_6.01252,535,888 - 252,536,099NCBIRnor6.0
Rnor_5.01259,759,026 - 259,759,237UniSTSRnor5.0
Celera1228,858,521 - 228,858,732UniSTS
RH 3.4 Map4511.02UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000075598   ⟹   ENSRNOP00000066404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,731,830 - 231,745,029 (+)Ensembl
Rnor_6.0 Ensembl1252,497,452 - 252,536,104 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099436   ⟹   ENSRNOP00000093527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,700,567 - 231,744,752 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115460   ⟹   ENSRNOP00000082601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,699,995 - 231,745,032 (+)Ensembl
RefSeq Acc Id: NM_001115048   ⟹   NP_001108520
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,119,740 - 241,158,225 (+)NCBI
mRatBN7.21231,706,544 - 231,745,029 (+)NCBI
Rnor_6.01252,497,452 - 252,536,108 (+)NCBI
Rnor_5.01259,714,296 - 259,759,251 (+)NCBI
Celera1228,820,260 - 228,858,741 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231296   ⟹   XP_006231358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,113,569 - 241,158,225 (+)NCBI
mRatBN7.21231,700,410 - 231,745,034 (+)NCBI
Rnor_6.01252,491,301 - 252,536,113 (+)NCBI
Rnor_5.01259,714,296 - 259,759,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231297   ⟹   XP_006231359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,095,695 - 241,158,225 (+)NCBI
mRatBN7.21231,699,620 - 231,745,034 (+)NCBI
Rnor_6.01252,490,125 - 252,536,113 (+)NCBI
Rnor_5.01259,714,296 - 259,759,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231299   ⟹   XP_006231361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,113,164 - 241,158,225 (+)NCBI
mRatBN7.21231,699,707 - 231,745,034 (+)NCBI
Rnor_6.01252,490,805 - 252,536,113 (+)NCBI
Rnor_5.01259,714,296 - 259,759,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760346   ⟹   XP_008758568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,131,330 - 241,158,225 (+)NCBI
mRatBN7.21231,724,698 - 231,745,034 (+)NCBI
Rnor_6.01252,512,954 - 252,536,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760349   ⟹   XP_008758571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,138,100 - 241,158,225 (+)NCBI
mRatBN7.21231,724,905 - 231,745,034 (+)NCBI
Rnor_6.01252,516,047 - 252,536,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091054   ⟹   XP_038946982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,113,174 - 241,158,225 (+)NCBI
mRatBN7.21231,699,965 - 231,745,034 (+)NCBI
RefSeq Acc Id: XM_039091065   ⟹   XP_038946993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,113,598 - 241,158,225 (+)NCBI
mRatBN7.21231,700,721 - 231,745,034 (+)NCBI
RefSeq Acc Id: XM_039091083   ⟹   XP_038947011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81241,113,599 - 241,152,366 (+)NCBI
mRatBN7.21231,700,403 - 231,739,164 (+)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_001108520   ⟸   NM_001115048
- UniProtKB: B0BMZ5 (UniProtKB/TrEMBL),   A0A8I6AK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231361   ⟸   XM_006231299
- Peptide Label: isoform X1
- UniProtKB: B0BMZ5 (UniProtKB/TrEMBL),   A0A8I6AK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231359   ⟸   XM_006231297
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006231358   ⟸   XM_006231296
- Peptide Label: isoform X1
- UniProtKB: B0BMZ5 (UniProtKB/TrEMBL),   A0A8I6AK00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758568   ⟸   XM_008760346
- Peptide Label: isoform X1
- UniProtKB: B0BMZ5 (UniProtKB/TrEMBL),   A0A8I6AK00 (UniProtKB/TrEMBL)
- Sequence:
MPN

Name Modeler Protein Id AA Range Protein Structure
AF-B0BMZ5-F1-model_v2 AlphaFold B0BMZ5 1-436 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-55880 BioCyc
Ensembl Genes ENSRNOG00000050224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075598 ENTREZGENE
  ENSRNOT00000075598.2 UniProtKB/TrEMBL
  ENSRNOT00000099436.1 UniProtKB/TrEMBL
  ENSRNOT00000115460 ENTREZGENE
  ENSRNOT00000115460.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7454746 IMAGE-MGC_LOAD
InterPro Mov34_MPN_PAD1 UniProtKB/TrEMBL
  MPN UniProtKB/TrEMBL
  STAMBP/STALP-like_MPN UniProtKB/TrEMBL
  USP8_dimer UniProtKB/TrEMBL
KEGG Report rno:687696 UniProtKB/TrEMBL
MGC_CLONE MGC:187528 IMAGE-MGC_LOAD
NCBI Gene 687696 ENTREZGENE
PANTHER AMSH-LIKE PROTEASE UniProtKB/TrEMBL
  AMSH-LIKE PROTEASE UniProtKB/TrEMBL
Pfam Mov34 UniProtKB/TrEMBL
  USP8_dimer UniProtKB/TrEMBL
PhenoGen Stambpl1 PhenoGen
PROSITE MPN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050224 RatGTEx
SMART JAB_MPN UniProtKB/TrEMBL
Superfamily-SCOP JAB1/MPN domain UniProtKB/TrEMBL
  USP8 N-terminal domain-like UniProtKB/TrEMBL
UniProt A0A8I5ZXJ2_RAT UniProtKB/TrEMBL
  A0A8I6AK00 ENTREZGENE, UniProtKB/TrEMBL
  B0BMZ5 ENTREZGENE, UniProtKB/TrEMBL
  M0RA63_RAT UniProtKB/TrEMBL
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-16 Stambpl1  STAM binding protein-like 1  LOC687696  similar to AMSH-family protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC687696  similar to AMSH-family protein      Symbol and Name status set to provisional 70820 PROVISIONAL