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Gene: Usp35 (ubiquitin specific peptidase 35) Rattus norvegicus

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Symbol:

Usp35

Name:

ubiquitin specific peptidase 35

RGD ID:

1565984

Description:

Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP35 (ubiquitin specific peptidase 35); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308834; RGD1565984; similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35); similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35); ubiquitin carboxyl-terminal hydrolase 35

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP35 (ubiquitin specific peptidase 35)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Mus musculus (house mouse):	Usp35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp35 (ubiquitin specific peptidase 35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP35 (ubiquitin specific peptidase 35)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp35 (ubiquitin specific peptidase 35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	DUBAI	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp35	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	161,037,428 - 161,061,114 (-)	NCBI		GRCr8
mRatBN7.2	1	151,626,195 - 151,649,926 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	151,626,196 - 151,650,015 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	162,283,866 - 162,307,610 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	162,284,777 - 162,300,515 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	168,490,390 - 168,514,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	154,549,248 - 154,565,892 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	149,725,523 - 149,749,267 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Rat	intellectual disability		ISO	USP35 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Rat	1,3-dinitrobenzene	decreases expression	EXP		6480464	3-dinitrobenzene results in decreased expression of USP35 mRNA	CTD	PMID:21983209
Usp35	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of USP35 mRNA	CTD	PMID:33387578
Usp35	Rat	3,3',5,5'-tetrabromobisphenol A	decreases expression	ISO	Usp35 (Mus musculus)	6480464	tetrabromobisphenol A results in decreased expression of USP35 mRNA	CTD	PMID:25172293
Usp35	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Usp35 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of USP35 mRNA	CTD	PMID:20188158
Usp35	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of USP35 mRNA	CTD	PMID:36041667
Usp35	Rat	aristolochic acid A	increases expression	ISO	USP35 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of USP35 mRNA	CTD	PMID:33212167
Usp35	Rat	arsenite(3-)	multiple interactions	ISO	USP35 (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to USP35 mRNA]	CTD	PMID:32406909
Usp35	Rat	arsenous acid	decreases expression	ISO	Usp35 (Mus musculus)	6480464	Arsenic Trioxide results in decreased expression of USP35 mRNA	CTD	PMID:35676786
Usp35	Rat	azathioprine	increases expression	ISO	USP35 (Homo sapiens)	6480464	Azathioprine results in increased expression of USP35 mRNA	CTD	PMID:22623647
Usp35	Rat	benzo[a]pyrene	increases expression	ISO	USP35 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of USP35 mRNA	CTD	PMID:21632981
Usp35	Rat	benzo[a]pyrene	decreases methylation	ISO	USP35 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of USP35 5' UTR	CTD	PMID:27901495
Usp35	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of USP35 mRNA	CTD	PMID:25181051
Usp35	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of USP35 mRNA	CTD	PMID:36041667
Usp35	Rat	bisphenol A	multiple interactions	ISO	USP35 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of USP35 gene	CTD	PMID:31601247
Usp35	Rat	bisphenol A	decreases methylation	ISO	USP35 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of USP35 gene	CTD	PMID:31601247
Usp35	Rat	bisphenol F	decreases expression	ISO	Usp35 (Mus musculus)	6480464	bisphenol F results in decreased expression of USP35 mRNA	CTD	PMID:38685157
Usp35	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of USP35 mRNA	CTD	PMID:36041667
Usp35	Rat	CGP 52608	multiple interactions	ISO	USP35 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to USP35 gene]	CTD	PMID:28238834
Usp35	Rat	cisplatin	multiple interactions	ISO	USP35 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of USP35 mRNA	CTD	PMID:27392435
Usp35	Rat	copper(II) sulfate	increases expression	ISO	USP35 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of USP35 mRNA	CTD	PMID:19549813
Usp35	Rat	cyclosporin A	increases expression	ISO	USP35 (Homo sapiens)	6480464	Cyclosporine results in increased expression of USP35 mRNA	CTD	PMID:25562108
Usp35	Rat	diarsenic trioxide	decreases expression	ISO	Usp35 (Mus musculus)	6480464	Arsenic Trioxide results in decreased expression of USP35 mRNA	CTD	PMID:35676786
Usp35	Rat	Dibutyl phosphate	affects expression	ISO	USP35 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of USP35 mRNA	CTD	PMID:37042841
Usp35	Rat	ethanol	affects splicing	ISO	Usp35 (Mus musculus)	6480464	Ethanol affects the splicing of USP35 mRNA	CTD	PMID:30319688
Usp35	Rat	FR900359	decreases phosphorylation	ISO	USP35 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of USP35 protein	CTD	PMID:37730182
Usp35	Rat	fulvestrant	multiple interactions	ISO	USP35 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of USP35 gene	CTD	PMID:31601247
Usp35	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of USP35 mRNA	CTD	PMID:33387578
Usp35	Rat	leflunomide	decreases expression	ISO	USP35 (Homo sapiens)	6480464	leflunomide results in decreased expression of USP35 mRNA	CTD	PMID:28988120
Usp35	Rat	maneb	multiple interactions	ISO	Usp35 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP35 mRNA	CTD	PMID:36117858
Usp35	Rat	paracetamol	decreases expression	ISO	USP35 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of USP35 mRNA	CTD	PMID:29067470
Usp35	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of USP35 mRNA	CTD	PMID:33387578
Usp35	Rat	paraquat	multiple interactions	ISO	Usp35 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP35 mRNA	CTD	PMID:36117858
Usp35	Rat	quercetin	increases expression	ISO	USP35 (Homo sapiens)	6480464	Quercetin results in increased expression of USP35 mRNA	CTD	PMID:21632981
Usp35	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of USP35 mRNA	CTD	PMID:19281266
Usp35	Rat	sunitinib	decreases expression	ISO	USP35 (Homo sapiens)	6480464	Sunitinib results in decreased expression of USP35 mRNA	CTD	PMID:31533062
Usp35	Rat	titanium dioxide	decreases methylation	ISO	Usp35 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of USP35 promoter alternative form	CTD	PMID:35295148
Usp35	Rat	titanium dioxide	increases methylation	ISO	Usp35 (Mus musculus)	6480464	titanium dioxide results in increased methylation of USP35 gene	CTD	PMID:35295148
Usp35	Rat	triptonide	decreases expression	ISO	Usp35 (Mus musculus)	6480464	triptonide results in decreased expression of USP35 mRNA	CTD	PMID:33045310
Usp35	Rat	urethane	affects expression	ISO	USP35 (Homo sapiens)	6480464	Urethane affects the expression of USP35 mRNA	CTD	PMID:28818685
Usp35	Rat	valproic acid	decreases methylation	ISO	USP35 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of USP35 gene	CTD	PMID:29154799
Usp35	Rat	valproic acid	affects expression	ISO	USP35 (Homo sapiens)	6480464	Valproic Acid affects the expression of USP35 mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp35	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp35	Rat	regulation of protein stability	involved_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Rat	cytosol	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp35	Rat	nucleus	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp35	Rat	cysteine-type deubiquitinase activity	enables	ISO	USP35 (Homo sapiens)	1624291	PMID:14715245	RGD	PMID:14715245
Usp35	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 and InterPro:IPR018200	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp35	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9P2H5 and ensembl:ENSP00000431876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp35	Rat	cysteine-type deubiquitinase activity	enables	IBA	FB:FBgn0005632 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp35	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp35	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp35	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp35	Rat	protein binding	enables	ISO	USP35 (Homo sapiens)	1624291	UniProtKB:O76024 and PMID:32814053	RGD	PMID:32814053

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:14715245

Usp35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	161,037,428 - 161,061,114 (-)	NCBI		GRCr8
mRatBN7.2	1	151,626,195 - 151,649,926 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	151,626,196 - 151,650,015 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	162,283,866 - 162,307,610 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	162,284,777 - 162,300,515 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	168,490,390 - 168,514,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	154,549,248 - 154,565,892 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	149,725,523 - 149,749,267 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

USP35
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	78,188,919 - 78,237,219 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	78,188,812 - 78,215,232 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	77,899,965 - 77,926,278 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	77,577,606 - 77,603,401 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	75,208,342 - 75,234,241 (+)	NCBI		Celera
Cytogenetic Map	11	q14.1	NCBI
HuRef	11	74,197,805 - 74,244,614 (+)	NCBI		HuRef
CHM1_1	11	77,783,021 - 77,808,919 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	78,122,182 - 78,166,945 (+)	NCBI		T2T-CHM13v2.0

Usp35
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	96,958,610 - 96,981,502 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	96,958,587 - 96,981,227 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	97,309,403 - 97,332,308 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	97,309,380 - 97,332,020 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	104,457,890 - 104,474,474 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	87,052,626 - 87,068,257 (-)	NCBI		MGSCv36	mm8
MGSCv36	7	97,185,445 - 97,201,156 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	7	E1	NCBI
cM Map	7	53.47	NCBI

Usp35
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	13,756,488 - 13,772,052 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	13,755,604 - 13,779,049 (-)	NCBI	ChiLan1.0	ChiLan1.0

USP35
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	79,121,945 - 79,166,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	80,166,051 - 80,210,330 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	73,249,038 - 73,293,063 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	76,870,654 - 76,896,850 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	76,870,654 - 76,896,841 (+)	Ensembl	panpan1.1		panPan2

USP35
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	20,607,504 - 20,686,215 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	20,607,491 - 20,654,640 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	20,502,337 - 20,581,046 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	20,810,926 - 20,889,672 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	20,810,926 - 20,858,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	20,586,891 - 20,640,008 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	20,802,579 - 20,855,712 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	20,726,713 - 20,779,864 (-)	NCBI		UU_Cfam_GSD_1.0

Usp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	65,150,268 - 65,174,286 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	6,756,586 - 6,772,879 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	6,750,349 - 6,773,889 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP35
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	12,585,955 - 12,662,955 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	12,586,028 - 12,662,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	13,866,124 - 13,884,923 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP35
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	69,394,500 - 69,419,577 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	69,402,028 - 69,418,630 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	56,326,556 - 56,351,635 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp35
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624863	1,199,188 - 1,214,498 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624863	1,192,618 - 1,215,357 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Usp35
55 total Variants

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
1	151629147	151629148	G	A	snv	LH/MavRrrcAek (2020), LEXF1C/Stm (2019), LEXF4/Stm (2020), RCS/LavRrrcMcwi (2021), MR/NRrrc (2022), LEXF9/StmMcwi (2022), LEXF8D/Stm (2022), LEXF8A/StmMcwi (2021), LEXF7C/StmMcwi (2022), LEXF7A/Stm (2019NG), LEXF5/Stm (2019NG), LEXF2C/StmMcwi (2022), LEXF1C/StmMcwi (2021), LEW/Crl (2019NG), LL/MavRrrcAek (2020), MR/N (2020), PVG/Seac (2019), BUF/N (2020), FHH/EurMcwi (2019), LEW/Crl (2019), European Variation Archive Release 3, LEXF11/Stm (2020), European Variation Archive Release 4, FXLE22/StmMcwi (2023), FXLE20/StmMcwi (2023), LEXF8D/StmMcwi (2023), FXLE23/StmMcwi (2023), FXLE14/StmMcwi (2023), FXLE21/StmMcwi (2023), FXLE13/StmMcwi (2023), LEXF5/StmMcwi (2023), LEXF1A/Stm (2019), European Variation Archive Release 6, FHH/EurMcwi (2019NG), FXLE13/Stm (2019NG), FXLE14/Stm (2019NG), FXLE20/Stm (2019NG), FXLE23/Stm (2022), LE/Stm (2019)	View more Information
1	151629172	151629173	G	A	snv	SHR/NHsd (2021), SHR/NCrl (2021), SHRSP/A3NCrl (2019NG), HXB23/IpcvMcwi (2021), European Variation Archive Release 6, European Variation Archive Release 4, European Variation Archive Release 3, SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB4/IpcvMcwi (2020), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB10/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019NG), BXH3/CubMcwi (2020)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	99
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000031161
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	121767634	166767634	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383668	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	123556856	242907031	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	117917486	196963478	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	131763437	159756369	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	136745990	163747690	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
9685799	Bp375	Blood pressure QTL 375			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121833674	166833674	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
9685802	Bp376	Blood pressure QTL 376			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	126540680	171540680	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
634315	Niddm45	Non-insulin dependent diabetes mellitus QTL 45	7.16		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	144267916	172949660	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144267916	174133260	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
2313060	Bss71	Bone structure and strength QTL 71	2.6	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	1	118944747	163944747	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	168883176	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
8693608	Alc24	Alcohol consumption QTL 24	2.3	0.74	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	150452391	168228760	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	123556856	196963478	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat

RH139574

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	151,626,317 - 151,626,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	162,283,989 - 162,284,206	NCBI	Rnor6.0
Rnor_5.0	1	168,490,513 - 168,490,730	UniSTS	Rnor5.0
RGSC_v3.4	1	154,549,366 - 154,549,583	UniSTS	RGSC3.4
Celera	1	149,725,646 - 149,725,863	UniSTS
RH 3.4 Map	1	1150.7	UniSTS
Cytogenetic Map	1	q32	UniSTS

RH140406

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	151,626,317 - 151,626,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	162,283,989 - 162,284,232	NCBI	Rnor6.0
Rnor_5.0	1	168,490,513 - 168,490,756	UniSTS	Rnor5.0
RGSC_v3.4	1	154,549,366 - 154,549,609	UniSTS	RGSC3.4
Celera	1	149,725,646 - 149,725,889	UniSTS
Cytogenetic Map	1	q32	UniSTS

UniSTS:235713

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	161,037,512 - 161,037,733 (+)	Marker Load Pipeline
mRatBN7.2	1	151,626,280 - 151,626,500 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	162,283,952 - 162,284,171	NCBI	Rnor6.0
Rnor_5.0	1	168,490,476 - 168,490,695	UniSTS	Rnor5.0
RGSC_v3.4	1	154,549,329 - 154,549,548	UniSTS	RGSC3.4
Celera	1	149,725,609 - 149,725,828	UniSTS
Cytogenetic Map	1	q32	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001427809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001064027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031161 ⟹ ENSRNOP00000038242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	151,626,196 - 151,650,015 (-)	Ensembl
Rnor_6.0 Ensembl	1	162,284,777 - 162,300,515 (-)	Ensembl

RefSeq Acc Id:

NM_001427809 ⟹ NP_001414738

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,037,428 - 161,061,114 (-)	NCBI

RefSeq Acc Id:

XM_039101069 ⟹ XP_038956997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,053,249 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,642,067 (-)	NCBI

RefSeq Acc Id:

XM_039101071 ⟹ XP_038956999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,805 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,692 (-)	NCBI

RefSeq Acc Id:

XM_039101072 ⟹ XP_038957000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,691 (-)	NCBI

RefSeq Acc Id:

XM_039101073 ⟹ XP_038957001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,044,824 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,633,589 (-)	NCBI

RefSeq Acc Id:

XM_039101074 ⟹ XP_038957002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,691 (-)	NCBI

RefSeq Acc Id:

XM_039101075 ⟹ XP_038957003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,691 (-)	NCBI

RefSeq Acc Id:

XM_039101076 ⟹ XP_038957004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,691 (-)	NCBI

RefSeq Acc Id:

XM_039101079 ⟹ XP_038957007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI
mRatBN7.2	1	151,626,195 - 151,634,691 (-)	NCBI

RefSeq Acc Id:

XM_063262759 ⟹ XP_063118829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,805 (-)	NCBI

RefSeq Acc Id:

XM_063262760 ⟹ XP_063118830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,045,221 (-)	NCBI

RefSeq Acc Id:

XM_063262767 ⟹ XP_063118837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI

RefSeq Acc Id:

XM_063262768 ⟹ XP_063118838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,045,221 (-)	NCBI

RefSeq Acc Id:

XM_063262769 ⟹ XP_063118839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI

RefSeq Acc Id:

XM_063262772 ⟹ XP_063118842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,804 (-)	NCBI

RefSeq Acc Id:

XM_063262773 ⟹ XP_063118843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	161,038,077 - 161,047,991 (-)	NCBI


Protein RefSeqs	NP_001414738	(Get FASTA)	NCBI Sequence Viewer
	XP_038956997	(Get FASTA)	NCBI Sequence Viewer
	XP_038956999	(Get FASTA)	NCBI Sequence Viewer
	XP_038957000	(Get FASTA)	NCBI Sequence Viewer
	XP_038957001	(Get FASTA)	NCBI Sequence Viewer
	XP_038957002	(Get FASTA)	NCBI Sequence Viewer
	XP_038957003	(Get FASTA)	NCBI Sequence Viewer
	XP_038957004	(Get FASTA)	NCBI Sequence Viewer
	XP_038957007	(Get FASTA)	NCBI Sequence Viewer
	XP_063118829	(Get FASTA)	NCBI Sequence Viewer
	XP_063118830	(Get FASTA)	NCBI Sequence Viewer
	XP_063118837	(Get FASTA)	NCBI Sequence Viewer
	XP_063118838	(Get FASTA)	NCBI Sequence Viewer
	XP_063118839	(Get FASTA)	NCBI Sequence Viewer
	XP_063118842	(Get FASTA)	NCBI Sequence Viewer
	XP_063118843	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18498	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038242
	ENSRNOP00000038242.5

Ensembl Acc Id:

ENSRNOP00000038242 ⟸ ENSRNOT00000031161

RefSeq Acc Id:	XP_038956997 ⟸ XM_039101069
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038956999 ⟸ XM_039101071
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038957004 ⟸ XM_039101076
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038957002 ⟸ XM_039101074
- Peptide Label:	isoform X3

Protein Domains

USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8S4-F1-model_v2	AlphaFold	F1M8S4	1-1007	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-58453	BioCyc
Ensembl Genes	ENSRNOG00000024961	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031161	ENTREZGENE
	ENSRNOT00000031161.6	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_C19ubi-hydrolase_C_CS	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	Usp38-like_N	UniProtKB/TrEMBL
NCBI Gene	308834	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 35	UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/TrEMBL
	Usp38-like_N	UniProtKB/TrEMBL
PhenoGen	Usp35	PhenoGen
PROSITE	UCH_2_1	UniProtKB/TrEMBL
	UCH_2_2	UniProtKB/TrEMBL
	UCH_2_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024961	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
UniProt	F1M8S4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Usp35	ubiquitin specific peptidase 35	RGD1565984_predicted	similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-10	RGD1565984_predicted	similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (predicted)		similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1565984_predicted	similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35) (predicted)	LOC308834	similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC308834	similar to Ubiquitin carboxyl-terminal hydrolase 35 (Ubiquitin thiolesterase 35) (Ubiquitin-specific processing protease 35) (Deubiquitinating enzyme 35)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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