Usp9x (ubiquitin specific peptidase 9, X-linked) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Usp9x (ubiquitin specific peptidase 9, X-linked) Rattus norvegicus
Analyze
Symbol: Usp9x
Name: ubiquitin specific peptidase 9, X-linked
RGD ID: 1560056
Description: Predicted to enable several functions, including co-SMAD binding activity; deubiquitinase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including cytosolic ciliogenesis; monoubiquitinated protein deubiquitination; and transforming growth factor beta receptor superfamily signaling pathway. Predicted to act upstream of or within several processes, including cellular response to transforming growth factor beta stimulus; in utero embryonic development; and nervous system development. Predicted to be located in apical part of cell; cilium; and growth cone. Predicted to be active in centrosome; cytosol; and nucleus. Human ortholog(s) of this gene implicated in female-restricted syndromic X-linked intellectual disability 99 and non-syndromic X-linked intellectual disability 99. Orthologous to human USP9X (ubiquitin specific peptidase 9 X-linked); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC363445; probable ubiquitin carboxyl-terminal hydrolase FAF-X; RGD1560056; similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila); ubiquitin specific peptidase 9, X chromosome
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3-methylcholanthrene  (ISO)
5-fluorouracil  (ISO)
aconitine  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorohydrocarbon  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
fenofibrate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (ISO)
miconazole  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methylformamide  (ISO)
nickel dichloride  (EXP)
nickel subsulfide  (EXP)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phlorizin  (ISO)
potassium chromate  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (ISO)
centrosome  (ISO)
cilium  (ISO)
cytoplasm  (ISO)
cytosol  (IBA,ISO)
growth cone  (ISO)
nucleus  (IBA)
postsynapse  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10704870   PMID:14657369   PMID:15509704   PMID:17728463   PMID:18254724   PMID:18410486   PMID:19135894   PMID:19946888   PMID:20305814   PMID:21173155   PMID:22065755   PMID:22371489  
PMID:22871113   PMID:23146885   PMID:23861879   PMID:24607389   PMID:25763846   PMID:25931508   PMID:25944111   PMID:29626158  


Genomics

Comparative Map Data
Usp9x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
USP9X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,085,445 - 41,236,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,085,445 - 41,236,579 (+)EnsemblGRCh38hg38GRCh38
GRCh37X40,944,698 - 41,095,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,829,832 - 40,980,776 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX45,085,646 - 45,236,596 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,676,295 - 38,826,441 (+)NCBIHuRef
CHM1_1X40,977,600 - 41,128,503 (+)NCBICHM1_1
T2T-CHM13v2.0X40,487,470 - 40,638,605 (+)NCBIT2T-CHM13v2.0
Usp9x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,937,221 - 13,039,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,937,737 - 13,039,567 (+)EnsemblGRCm39 Ensembl
GRCm38X13,070,982 - 13,173,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,071,498 - 13,173,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X12,648,624 - 12,750,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,228,496 - 12,328,745 (+)NCBIMGSCv36mm8
CeleraX10,768,972 - 10,871,748 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.95NCBI
Usp9x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555651,479,040 - 1,602,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555651,479,040 - 1,602,070 (-)NCBIChiLan1.0ChiLan1.0
USP9X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,734,028 - 42,881,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,737,410 - 42,887,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,535,543 - 33,683,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,231,814 - 41,380,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,232,041 - 41,379,910 (+)Ensemblpanpan1.1panPan2
USP9X
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,522,873 - 35,676,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX22,845,661 - 23,024,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,571,563 - 35,712,343 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X35,624,905 - 35,803,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,597,545 - 35,776,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,640,469 - 35,819,595 (+)NCBIUU_Cfam_GSD_1.0
Usp9x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,780,903 - 27,894,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,649,842 - 7,735,382 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,649,808 - 7,732,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP9X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X36,736,049 - 36,888,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USP9X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,255,414 - 38,402,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblY489,840 - 626,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp9x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,405,560 - 14,527,639 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476214,403,361 - 14,527,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp9x
677 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1123
Count of miRNA genes:360
Interacting mature miRNAs:492
Transcripts:ENSRNOT00000048980
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat

Markers in Region
RH127557  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,589,002 - 9,589,202 (+)MAPPERmRatBN7.2
Rnor_6.0X10,523,776 - 10,523,975NCBIRnor6.0
Rnor_6.0X10,510,211 - 10,510,410NCBIRnor6.0
Rnor_5.0X11,308,593 - 11,308,792UniSTSRnor5.0
Rnor_5.0X11,322,158 - 11,322,357UniSTSRnor5.0
RGSC_v3.4X21,606,508 - 21,606,707UniSTSRGSC3.4
CeleraX10,119,569 - 10,119,768UniSTS
Cytogenetic MapXq13UniSTS
RH125670  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,592,814 - 9,593,046 (+)MAPPERmRatBN7.2
Rnor_6.0X10,526,220 - 10,526,451NCBIRnor6.0
Rnor_5.0X11,324,602 - 11,324,833UniSTSRnor5.0
RGSC_v3.4X21,610,320 - 21,610,551UniSTSRGSC3.4
CeleraX10,123,381 - 10,123,612UniSTS
Cytogenetic MapXq13UniSTS
RH142260  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,591,801 - 9,591,955 (+)MAPPERmRatBN7.2
Rnor_6.0X10,513,010 - 10,513,163NCBIRnor6.0
Rnor_5.0X11,311,392 - 11,311,545UniSTSRnor5.0
RGSC_v3.4X21,609,307 - 21,609,460UniSTSRGSC3.4
CeleraX10,122,368 - 10,122,521UniSTS
RH 3.4 MapX21.6UniSTS
Cytogenetic MapXq13UniSTS
BF396338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,640,927 - 9,641,075 (+)MAPPERmRatBN7.2
Rnor_6.0X10,573,812 - 10,573,959NCBIRnor6.0
Rnor_5.0X11,372,194 - 11,372,341UniSTSRnor5.0
RGSC_v3.4X21,660,103 - 21,660,250UniSTSRGSC3.4
CeleraX10,171,446 - 10,171,593UniSTS
RH 3.4 MapX16.2UniSTS
Cytogenetic MapXq13UniSTS
RH141703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,591,548 - 9,591,751 (+)MAPPERmRatBN7.2
Rnor_6.0X10,512,757 - 10,512,959NCBIRnor6.0
Rnor_5.0X11,311,139 - 11,311,341UniSTSRnor5.0
RGSC_v3.4X21,609,054 - 21,609,256UniSTSRGSC3.4
CeleraX10,122,115 - 10,122,317UniSTS
RH 3.4 MapX23.9UniSTS
Cytogenetic MapXq13UniSTS
BG371737  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 MapX19.2UniSTS
Cytogenetic MapXq13UniSTS
D20S998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,592,789 - 9,592,908 (+)MAPPERmRatBN7.2
Rnor_6.0X10,526,195 - 10,526,313NCBIRnor6.0
Rnor_5.0X11,324,577 - 11,324,695UniSTSRnor5.0
RGSC_v3.4X21,610,295 - 21,610,413UniSTSRGSC3.4
CeleraX10,123,356 - 10,123,474UniSTS
Cytogenetic MapXq13UniSTS
RH125324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,590,527 - 9,590,706 (+)MAPPERmRatBN7.2
Rnor_6.0X10,525,301 - 10,525,479NCBIRnor6.0
Rnor_6.0X10,511,736 - 10,511,914NCBIRnor6.0
Rnor_5.0X11,310,118 - 11,310,296UniSTSRnor5.0
Rnor_5.0X11,323,683 - 11,323,861UniSTSRnor5.0
RGSC_v3.4X21,608,033 - 21,608,211UniSTSRGSC3.4
CeleraX10,121,094 - 10,121,272UniSTS
Cytogenetic MapXq13UniSTS
USP9X_3261  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4X21,609,885 - 21,610,490UniSTSRGSC3.4
CeleraX10,122,946 - 10,123,551UniSTS
Cytogenetic MapXq13UniSTS
px-12d6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X9,589,184 - 9,589,297 (+)MAPPERmRatBN7.2
Rnor_6.0X10,523,958 - 10,524,070NCBIRnor6.0
Rnor_6.0X10,510,393 - 10,510,505NCBIRnor6.0
Rnor_5.0X11,308,775 - 11,308,887UniSTSRnor5.0
Rnor_5.0X11,322,340 - 11,322,452UniSTSRnor5.0
RGSC_v3.4X21,606,690 - 21,606,802UniSTSRGSC3.4
CeleraX10,119,751 - 10,119,863UniSTS
Cytogenetic MapXq13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 8 10 74 35 38 11 8
Low 1 1 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000048980   ⟹   ENSRNOP00000043441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX9,590,589 - 9,696,711 (-)Ensembl
Rnor_6.0 EnsemblX10,511,797 - 10,630,297 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080651   ⟹   ENSRNOP00000072190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX9,588,825 - 9,696,695 (-)Ensembl
Rnor_6.0 EnsemblX10,510,033 - 10,630,281 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093067   ⟹   ENSRNOP00000075990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX9,594,237 - 9,696,711 (-)Ensembl
RefSeq Acc Id: NM_001135923   ⟹   NP_001129395
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,633 - 12,369,491 (-)NCBI
mRatBN7.2X9,588,825 - 9,696,695 (-)NCBI
Rnor_6.0X10,510,033 - 10,630,281 (-)NCBI
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBI
RGSC_v3.4X21,606,330 - 21,718,042 (-)RGD
CeleraX10,119,391 - 10,226,786 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099859   ⟹   XP_038955787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099860   ⟹   XP_038955788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
mRatBN7.2X9,588,943 - 9,726,993 (-)NCBI
RefSeq Acc Id: XM_039099861   ⟹   XP_038955789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
mRatBN7.2X9,588,943 - 9,726,993 (-)NCBI
RefSeq Acc Id: XM_039099862   ⟹   XP_038955790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,368,531 (-)NCBI
mRatBN7.2X9,588,943 - 9,695,584 (-)NCBI
RefSeq Acc Id: XM_039099863   ⟹   XP_038955791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099864   ⟹   XP_038955792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099865   ⟹   XP_038955793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,369,516 (-)NCBI
mRatBN7.2X9,588,943 - 9,696,011 (-)NCBI
RefSeq Acc Id: XM_039099867   ⟹   XP_038955795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,346,895 (-)NCBI
mRatBN7.2X9,588,943 - 9,674,098 (-)NCBI
RefSeq Acc Id: XM_063280114   ⟹   XP_063136184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
RefSeq Acc Id: XM_063280115   ⟹   XP_063136185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
RefSeq Acc Id: XM_063280116   ⟹   XP_063136186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,261,751 - 12,399,780 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001129395   ⟸   NM_001135923
- Peptide Label: isoform 2
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072190   ⟸   ENSRNOT00000080651
RefSeq Acc Id: ENSRNOP00000043441   ⟸   ENSRNOT00000048980
RefSeq Acc Id: XP_038955789   ⟸   XM_039099861
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955788   ⟸   XM_039099860
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955793   ⟸   XM_039099865
- Peptide Label: isoform X4
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955791   ⟸   XM_039099863
- Peptide Label: isoform X2
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955792   ⟸   XM_039099864
- Peptide Label: isoform X3
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL),   A0A0G2K2C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955787   ⟸   XM_039099859
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955790   ⟸   XM_039099862
- Peptide Label: isoform X1
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955795   ⟸   XM_039099867
- Peptide Label: isoform X4
- UniProtKB: A6JZY9 (UniProtKB/TrEMBL),   D3ZC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000075990   ⟸   ENSRNOT00000093067
RefSeq Acc Id: XP_063136186   ⟸   XM_063280116
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063136185   ⟸   XM_063280115
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063136184   ⟸   XM_063280114
- Peptide Label: isoform X1
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2C7-F1-model_v2 AlphaFold A0A0G2K2C7 1-2554 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701707
Promoter ID:EPDNEW_R12231
Type:initiation region
Name:Usp9x_1
Description:ubiquitin specific peptidase 9, X-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X10,630,281 - 10,630,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560056 AgrOrtholog
BioCyc Gene G2FUF-3073 BioCyc
Ensembl Genes ENSRNOG00000003261 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048980.6 UniProtKB/TrEMBL
  ENSRNOT00000080651.2 UniProtKB/TrEMBL
  ENSRNOT00000093067.2 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DUF3517 UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19ubi-hydrolase_C_CS UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  UCH/PAN2 UniProtKB/TrEMBL
KEGG Report rno:363445 UniProtKB/TrEMBL
NCBI Gene 363445 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X-RELATED UniProtKB/TrEMBL
  UBIQUITINYL HYDROLASE 1 UniProtKB/TrEMBL
Pfam DUF3517 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
PhenoGen Usp9x PhenoGen
PROSITE UCH_2_1 UniProtKB/TrEMBL
  UCH_2_2 UniProtKB/TrEMBL
  UCH_2_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003261 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A0G2K2C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWR2_RAT UniProtKB/TrEMBL
  A6JZY9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC84 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Usp9x  ubiquitin specific peptidase 9, X-linked  Usp9x  ubiquitin specific peptidase 9, X chromosome   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Usp9x  ubiquitin specific peptidase 9, X chromosome   Usp9x_predicted  ubiquitin specific peptidase 9, X chromosome (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Usp9x_predicted  ubiquitin specific peptidase 9, X chromosome (predicted)  RGD1560056_predicted  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila) (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560056_predicted  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila) (predicted)  LOC363445  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363445  similar to ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL