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Gene: Pak5 (p21 (RAC1) activated kinase 5) Rattus norvegicus

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Symbol:

Pak5

Name:

p21 (RAC1) activated kinase 5

RGD ID:

1312009

Description:

Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cellular response to starvation; intracellular signal transduction; and regulation of MAPK cascade. Predicted to act upstream of or within learning or memory; locomotory behavior; and negative regulation of extrinsic apoptotic signaling pathway. Predicted to be located in cytosol; mitochondrion; and nucleus. Predicted to be active in cytoplasm and synapse. Orthologous to human PAK5 (p21 (RAC1) activated kinase 5); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; renal cell carcinoma pathway; T cell receptor signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311450; p21 (CDKN1A)-activated kinase 7; p21 (RAC1) activated kinase 7; p21 protein (Cdc42/Rac)-activated kinase 7; p21-activated kinase 5; p21-activated kinase 7; PAK-5; PAK-7; Pak7; serine/threonine-protein kinase PAK 5; serine/threonine-protein kinase PAK 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PAK5 (p21 (RAC1) activated kinase 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pak5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pak5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PAK5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PAK5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pak5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PAK5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PAK5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pak5 (p21 (RAC1) activated kinase 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HBEGF (heparin binding EGF like growth factor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PAK5 (p21 (RAC1) activated kinase 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pak5 (p21 (RAC1) activated kinase 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pak7 (p21 protein (Cdc42/Rac)-activated kinase 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CLA4	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	mbt	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pak-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SKM1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pak5	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	143,848,404 - 144,156,674 (-)	NCBI		GRCr8
mRatBN7.2	3	123,395,678 - 123,703,967 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	123,396,497 - 123,703,930 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	127,299,735 - 127,598,969 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	135,876,723 - 136,175,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	133,555,363 - 133,854,570 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	129,042,232 - 129,357,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	129,042,742 - 129,357,491 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	135,530,902 - 135,841,101 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	124,152,033 - 124,457,585 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	124,057,603 - 124,363,156 (-)	NCBI
Celera	3	122,127,080 - 122,432,709 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	ALAGILLE SYNDROME 1		ISO	RGD:1323766	8554872	ClinVar Annotator: match by term: Alagille syndrome due to a JAG1 point mutation	ClinVar	PMID:10213047\|PMID:11180599\|PMID:16575836\|PMID:19058200\|PMID:22382802\|PMID:24684524\|PMID:28492532\|PMID:32733715
Pak5	Rat	congenital myasthenic syndrome 18		ISO	RGD:1323766	8554872	ClinVar Annotator: match by term: MYASTHENIC SYNDROME, CONGENITAL, 18, WITH INTELLECTUAL DISABILITY AND ATAXIA	ClinVar	PMID:28492532\|PMID:32733715
Pak5	Rat	developmental and epileptic encephalopathy 12		ISO	RGD:1323766	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 12	ClinVar	PMID:10213047\|PMID:11180599\|PMID:16575836\|PMID:19058200\|PMID:22382802\|PMID:24684524\|PMID:28492532
Pak5	Rat	developmental and epileptic encephalopathy 12		ISO	RGD:1323766	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy 12	ClinVar	PMID:28492532\|PMID:32733715

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	1,2-dichloroethane	decreases expression	ISO	RGD:1323767	6480464	ethylene dichloride results in decreased expression of PAK5 mRNA	CTD	PMID:28960355
Pak5	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of PAK5 mRNA	CTD	PMID:32109520
Pak5	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1323767	6480464	Tetrachlorodibenzodioxin affects the expression of PAK5 mRNA	CTD	PMID:24680724\|PMID:26377647
Pak5	Rat	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	EXP		6480464	2,3,7,8-tetrachlorodibenzofuran results in decreased expression of PAK5 mRNA	CTD	PMID:32109520
Pak5	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1323767	6480464	bisphenol S results in decreased expression of PAK5 mRNA	CTD	PMID:34850234
Pak5	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of PAK5 mRNA	CTD	PMID:24780913
Pak5	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of PAK5 mRNA	CTD	PMID:28959563
Pak5	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1323766	6480464	Aflatoxin B1 results in decreased methylation of PAK5 3' UTR; Aflatoxin B1 results in decreased more ...	CTD	PMID:30157460
Pak5	Rat	aflatoxin B1	decreases expression	ISO	RGD:1323766	6480464	Aflatoxin B1 results in decreased expression of PAK5 mRNA	CTD	PMID:32234424\|PMID:35690182
Pak5	Rat	all-trans-retinoic acid	multiple interactions	ISO	RGD:1323767	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PAK5 mRNA	CTD	PMID:36189433
Pak5	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1323766	6480464	Benzo(a)pyrene results in decreased expression of PAK5 mRNA	CTD	PMID:32234424\|PMID:35690182
Pak5	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1323766	6480464	Benzo(a)pyrene affects the methylation of PAK5 5' UTR; Benzo(a)pyrene affects the methylation of PAK5 promoter	CTD	PMID:27901495
Pak5	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PAK5 mRNA	CTD	PMID:25181051
Pak5	Rat	bisphenol A	decreases expression	ISO	RGD:1323767	6480464	bisphenol A results in decreased expression of PAK5 mRNA	CTD	PMID:32156529
Pak5	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of PAK5 mRNA	CTD	PMID:33453195
Pak5	Rat	cisplatin	multiple interactions	ISO	RGD:1323767	6480464	[Cisplatin co-treated with Vinorelbine] results in decreased expression of PAK5 mRNA	CTD	PMID:21544650
Pak5	Rat	clothianidin	decreases expression	ISO	RGD:1323766	6480464	clothianidin results in decreased expression of PAK5 mRNA	CTD	PMID:31626844\|PMID:35690182
Pak5	Rat	cyclosporin A	decreases methylation	ISO	RGD:1323766	6480464	Cyclosporine results in decreased methylation of PAK5 promoter	CTD	PMID:27989131
Pak5	Rat	dorsomorphin	multiple interactions	ISO	RGD:1323766	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Pak5	Rat	ethanol	affects expression	ISO	RGD:1323767	6480464	Ethanol affects the expression of PAK5 mRNA	CTD	PMID:30319688
Pak5	Rat	ethylparaben	decreases expression	ISO	RGD:1323766	6480464	ethyl-p-hydroxybenzoate results in decreased expression of PAK5 mRNA	CTD	PMID:37690743
Pak5	Rat	genistein	decreases expression	ISO	RGD:1323767	6480464	Genistein results in decreased expression of PAK5 mRNA	CTD	PMID:32186404
Pak5	Rat	ketamine	decreases expression	EXP		6480464	Ketamine results in decreased expression of PAK5 mRNA	CTD	PMID:20080153
Pak5	Rat	Lasiocarpine	decreases expression	ISO	RGD:1323766	6480464	lasiocarpine results in decreased expression of PAK5 mRNA	CTD	PMID:32234424\|PMID:35690182
Pak5	Rat	lipopolysaccharide	decreases expression	ISO	RGD:1323766	6480464	Lipopolysaccharides results in decreased expression of PAK5 mRNA	CTD	PMID:35811015
Pak5	Rat	lipopolysaccharide	multiple interactions	ISO	RGD:1323766	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of PAK5 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
Pak5	Rat	methylmercury chloride	decreases expression	ISO	RGD:1323766	6480464	methylmercuric chloride results in decreased expression of PAK5 mRNA	CTD	PMID:28001369
Pak5	Rat	mono(2-ethylhexyl) phthalate	multiple interactions	ISO	RGD:1323767	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PAK5 mRNA	CTD	PMID:36189433
Pak5	Rat	N-Nitrosopyrrolidine	decreases expression	ISO	RGD:1323766	6480464	N-Nitrosopyrrolidine results in decreased expression of PAK5 mRNA	CTD	PMID:32234424\|PMID:35690182
Pak5	Rat	O-methyleugenol	decreases expression	ISO	RGD:1323766	6480464	methyleugenol results in decreased expression of PAK5 mRNA	CTD	PMID:32234424\|PMID:35690182
Pak5	Rat	paracetamol	increases expression	ISO	RGD:1323766	6480464	Acetaminophen results in increased expression of PAK5 mRNA	CTD	PMID:22230336
Pak5	Rat	phenylmercury acetate	decreases expression	ISO	RGD:1323766	6480464	Phenylmercuric Acetate results in decreased expression of PAK5 mRNA	CTD	PMID:26272509
Pak5	Rat	phenylmercury acetate	multiple interactions	ISO	RGD:1323766	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Pak5	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RGD:1323766	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of PAK5 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
Pak5	Rat	SB 431542	multiple interactions	ISO	RGD:1323766	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Pak5	Rat	sodium arsenite	decreases expression	ISO	RGD:1323767	6480464	sodium arsenite results in decreased expression of PAK5 mRNA	CTD	PMID:36209798
Pak5	Rat	titanium dioxide	increases expression	ISO	RGD:1323767	6480464	titanium dioxide results in increased expression of PAK5 mRNA	CTD	PMID:29264374
Pak5	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of PAK5 mRNA	CTD	PMID:33387578
Pak5	Rat	trichostatin A	increases expression	ISO	RGD:1323766	6480464	trichostatin A results in increased expression of PAK5 mRNA	CTD	PMID:24935251
Pak5	Rat	valproic acid	affects expression	ISO	RGD:1323766	6480464	Valproic Acid affects the expression of PAK5 mRNA	CTD	PMID:25979313
Pak5	Rat	valproic acid	increases expression	ISO	RGD:1323766	6480464	Valproic Acid results in increased expression of PAK5 mRNA	CTD	PMID:26272509
Pak5	Rat	valproic acid	multiple interactions	ISO	RGD:1323766	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Pak5	Rat	vinorelbine	multiple interactions	ISO	RGD:1323767	6480464	[Cisplatin co-treated with Vinorelbine] results in decreased expression of PAK5 mRNA	CTD	PMID:21544650

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	apoptotic process	involved_in	IEA	UniProtKB-KW:KW-0053	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	apoptotic process	involved_in	IEA	InterPro:IPR028754	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pak5	Rat	cellular response to starvation	involved_in	IBA	CGD:CAL0000192143\|CGD:CAL0000198103\|PANTHER:PTN000685129\|dictyBase:DDB_G0269166\|dictyBase:DDB_G0269696\|dictyBase:DDB_G0276459	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pak5	Rat	cytoskeleton organization	involved_in	IEA	InterPro:IPR028754	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pak5	Rat	intracellular signal transduction	involved_in	IBA	CGD:CAL0000187689\|CGD:CAL0000198103\|FB:FBgn0010909\|FB:FBgn0261456\|MGI:1928487\|MGI:1929004\|PANTHER:PTN001969365\|RGD:621590\|SGD:S000000999\|TAIR:locus:2026459\|UniProtKB:O95819\|UniProtKB:Q13043\|UniProtKB:Q13188\|UniProtKB:Q9H2K8\|UniProtKB:Q9UKE5\|WB:WBGene00003144	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pak5	Rat	learning	acts_upstream_of_or_within	ISO	RGD:1323767	1624291	MGI:2679420 PMID:18675265, PMID:23593460	RGD	PMID:18675265\|PMID:23593460
Pak5	Rat	locomotory behavior	acts_upstream_of_or_within	ISO	RGD:1323767	1624291	MGI:2679420 PMID:18675265, PMID:23593460	RGD	PMID:18675265\|PMID:23593460
Pak5	Rat	memory	acts_upstream_of_or_within	ISO	RGD:1323767	1624291	MGI:2679420 PMID:18675265, PMID:23593460	RGD	PMID:18675265\|PMID:23593460
Pak5	Rat	negative regulation of extrinsic apoptotic signaling pathway	acts_upstream_of_or_within	ISO	RGD:1323767	1624291	PMID:12897128	RGD	PMID:12897128
Pak5	Rat	regulation of MAPK cascade	involved_in	IBA	FB:FBgn0025743\|MGI:1339975\|MGI:1349394\|MGI:1355329\|MGI:1915919\|MGI:1928487\|PANTHER:PTN001969365\|PomBase:SPBC1604.14c\|UniProtKB:O95819\|UniProtKB:Q13153\|UniProtKB:Q8N4C8\|UniProtKB:Q9H2K8\|UniProtKB:Q9UKE5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	cytoplasm	is_active_in	IBA	FB:FBgn0010909\|FB:FBgn0025743\|FB:FBgn0044826\|FB:FBgn0261456\|FB:FBgn0267698\|MGI:1339975\|MGI:1920334\|MGI:1928487\|MGI:1929004\|PANTHER:PTN000684825\|PomBase:SPAC1F5.09c\|PomBase:SPBC1604.14c\|RGD:3250\|RGD:3251\|RGD:61953\|SGD:S000000999\|SGD:S000005242\|UniProtKB:A0A8J1JBA5\|UniProtKB:O95819\|UniProtKB:Q13043\|UniProtKB:Q13153\|UniProtKB:Q13177\|UniProtKB:Q13188\|UniProtKB:Q8N4C8\|UniProtKB:Q9P286\|UniProtKB:Q9UKE5\|WB:WBGene00002201\|WB:WBGene00003911\|dictyBase:DDB_G0267450\|dictyBase:DDB_G0269166\|dictyBase:DDB_G0276459\|dictyBase:DDB_G0284181	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pak5	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pak5	Rat	cytosol	located_in	ISO	RGD:1323766	1624291		RGD	GO_REF:0000052
Pak5	Rat	mitochondrion	located_in	ISO	RGD:1323766	1624291		RGD	GO_REF:0000052
Pak5	Rat	mitochondrion	located_in	IEA	UniProtKB-SubCell:SL-0173	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pak5	Rat	mitochondrion	located_in	IEA	UniProtKB-KW:KW-0496	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	mitochondrion	located_in	ISO	RGD:1323767	1624291	PMID:12897128	RGD	PMID:12897128
Pak5	Rat	nuclear membrane	located_in	ISO	RGD:1323766	1624291		RGD	GO_REF:0000052
Pak5	Rat	nucleoplasm	located_in	ISO	RGD:1323766	1624291		RGD	GO_REF:0000052
Pak5	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pak5	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	synapse	is_active_in	ISO	RGD:1323767	1624291	PMID:24474471	RGD	PMID:24474471

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	ATP binding	enables	IEA	InterPro:IPR000719\|InterPro:IPR017441	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pak5	Rat	kinase activity	enables	IEA	UniProtKB-KW:KW-0418	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	protein binding	enables	ISO	RGD:1323766	1624291	UniProtKB:O60504\|UniProtKB:O76024\|UniProtKB:P07196\|UniProtKB:P16284\|UniProtKB:P26196\|UniProtKB:P42858\|UniProtKB:P48730\|UniProtKB:P50402\|UniProtKB:P51959\|UniProtKB:P60953\|UniProtKB:P62258\|UniProtKB:Q16825\|UniProtKB:Q2TAC2-2\|UniProtKB:Q8IW93\|UniProtKB:Q8N5M1\|UniProtKB:Q8NEC5\|UniProtKB:Q8TBB1\|UniProtKB:Q8WWY3\|UniProtKB:Q92530\|UniProtKB:Q96BZ8\|UniProtKB:Q96CN9\|UniProtKB:Q96EL1\|UniProtKB:Q96HA8\|UniProtKB:Q96JP2\|UniProtKB:Q96SW2\|UniProtKB:Q9BZW7\|UniProtKB:Q9H0I2\|UniProtKB:Q9H257\|UniProtKB:Q9H257-2\|UniProtKB:Q9H4E5\|UniProtKB:Q9H6L4\|UniProtKB:Q9UBK9\|UniProtKB:Q9Y3B2 PMID:19060904, PMID:20936779, PMID:25416956, PMID:25910212, PMID:31515488, PMID:32296183, PMID:32707033, PMID:32814053, PMID:36931259	RGD	PMID:19060904\|PMID:20936779\|PMID:25416956\|PMID:25910212\|PMID:31515488\|PMID:32296183\|PMID:32707033\|PMID:32814053\|PMID:36931259
Pak5	Rat	protein kinase activity	enables	IEA	InterPro:IPR000719	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pak5	Rat	protein serine kinase activity	enables	IEA	RHEA:17989	1600115	GO_REF:0000116	RHEA	GO_REF:0000116
Pak5	Rat	protein serine/threonine kinase activity	enables	IEA	InterPro:IPR028754\|InterPro:IPR033923	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pak5	Rat	protein serine/threonine kinase activity	enables	IEA	EC:2.7.11.1	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Pak5	Rat	protein serine/threonine kinase activity	enables	IEA	UniProtKB-KW:KW-0723	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pak5	Rat	protein serine/threonine kinase activity	enables	ISO	RGD:1323767	1624291	PMID:12897128	RGD	PMID:12897128
Pak5	Rat	protein serine/threonine kinase activity	enables	IBA	CGD:CAL0000192143\|FB:FBgn0025743\|FB:FBgn0044826\|FB:FBgn0261456\|FB:FBgn0267698\|MGI:1339975\|MGI:1339984\|MGI:1349394\|MGI:1355329\|MGI:1920334\|PANTHER:PTN000684825\|PomBase:SPAC1F5.09c\|PomBase:SPBC1604.14c\|RGD:3250\|RGD:3251\|RGD:621590\|SGD:S000000999\|SGD:S000005242\|UniProtKB:O75914\|UniProtKB:O95819\|UniProtKB:O96013\|UniProtKB:Q13043\|UniProtKB:Q13153\|UniProtKB:Q13177\|UniProtKB:Q13188\|UniProtKB:Q8N4C8\|UniProtKB:Q9H2K8\|UniProtKB:Q9UKE5\|WB:WBGene00003144\|dictyBase:DDB_G0269166\|dictyBase:DDB_G0276459	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pak5	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pak5	Rat	epidermal growth factor/neuregulin signaling pathway		IEA		6907045		KEGG	rno:04012
Pak5	Rat	renal cell carcinoma pathway		IEA		6907045		KEGG	rno:05211
Pak5	Rat	T cell receptor signaling pathway		IEA		6907045		KEGG	rno:04660

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12897128	PMID:18614015	PMID:18675265	PMID:23593460	PMID:24474471

Pak5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	143,848,404 - 144,156,674 (-)	NCBI		GRCr8
mRatBN7.2	3	123,395,678 - 123,703,967 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	123,396,497 - 123,703,930 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	127,299,735 - 127,598,969 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	135,876,723 - 136,175,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	133,555,363 - 133,854,570 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	129,042,232 - 129,357,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	129,042,742 - 129,357,491 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	135,530,902 - 135,841,101 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	124,152,033 - 124,457,585 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	124,057,603 - 124,363,156 (-)	NCBI
Celera	3	122,127,080 - 122,432,709 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

PAK5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	9,537,370 - 9,839,076 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	9,537,370 - 9,839,076 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	9,518,017 - 9,819,724 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	9,466,037 - 9,767,522 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	9,466,036 - 9,767,522	NCBI
Celera	20	9,588,063 - 9,889,850 (-)	NCBI		Celera
Cytogenetic Map	20	p12.2	NCBI
HuRef	20	9,470,003 - 9,771,581 (-)	NCBI		HuRef
CHM1_1	20	9,519,190 - 9,820,790 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	9,580,273 - 9,881,978 (-)	NCBI		T2T-CHM13v2.0

Pak5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	135,923,008 - 136,229,899 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	135,923,024 - 136,229,887 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	136,081,088 - 136,387,968 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	136,081,104 - 136,387,967 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	135,906,824 - 136,213,703 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	135,773,340 - 136,079,379 (-)	NCBI		MGSCv36	mm8
Celera	2	137,278,994 - 137,585,755 (-)	NCBI		Celera
Cytogenetic Map	2	F3	NCBI
cM Map	2	67.32	NCBI

Pak5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	19,511,822 - 19,619,663 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	19,509,727 - 19,826,087 (-)	NCBI	ChiLan1.0	ChiLan1.0

PAK5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	10,436,346 - 10,738,368 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	10,433,177 - 10,735,194 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	9,510,789 - 9,812,689 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	9,513,009 - 9,813,708 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	9,513,009 - 9,619,750 (-)	Ensembl	panpan1.1		panPan2

PAK5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	12,391,739 - 12,671,483 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	12,391,471 - 12,669,404 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	12,210,533 - 12,496,682 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	12,804,073 - 13,084,553 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	12,804,113 - 13,082,849 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	12,410,639 - 12,690,260 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	12,510,137 - 12,789,767 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	12,853,704 - 13,133,934 (+)	NCBI		UU_Cfam_GSD_1.0

Pak5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	161,148,089 - 161,500,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	9,633,230 - 9,932,174 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	9,825,425 - 9,932,162 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAK5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	18,461,062 - 18,785,313 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	18,461,060 - 18,785,869 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	20,828,842 - 21,258,863 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PAK5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	28,287,478 - 28,595,382 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	28,288,945 - 28,595,686 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	15,978,895 - 16,289,799 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pak5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	10,476,192 - 10,608,745 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	10,476,172 - 10,823,164 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Pak5
2325 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	240
Count of miRNA genes:	157
Interacting mature miRNAs:	194
Transcripts:	ENSRNOT00000007410
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	121056165	145956249	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

D3Rat156

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	143,965,998 - 143,966,100 (+)	Marker Load Pipeline
mRatBN7.2	3	123,513,284 - 123,513,386 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,166,111 - 129,166,212	NCBI	Rnor6.0
Rnor_5.0	3	135,651,587 - 135,651,688	UniSTS	Rnor5.0
RGSC_v3.4	3	124,268,926 - 124,269,028	RGD	RGSC3.4
RGSC_v3.4	3	124,268,927 - 124,269,028	UniSTS	RGSC3.4
RGSC_v3.1	3	124,174,278 - 124,174,628	RGD
Celera	3	122,243,230 - 122,243,331	UniSTS
SHRSP x BN Map	3	60.7499	UniSTS
SHRSP x BN Map	3	60.7499	RGD
Cytogenetic Map	3	q36	UniSTS

D3Rat254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,471,156 - 123,471,394 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,123,946 - 129,124,183	NCBI	Rnor6.0
Rnor_5.0	3	135,609,422 - 135,609,659	UniSTS	Rnor5.0
RGSC_v3.4	3	124,226,798 - 124,227,036	RGD	RGSC3.4
RGSC_v3.4	3	124,226,799 - 124,227,036	UniSTS	RGSC3.4
RGSC_v3.1	3	124,132,371 - 124,132,609	RGD
Celera	3	122,201,188 - 122,201,425	UniSTS
SHRSP x BN Map	3	60.8299	RGD
SHRSP x BN Map	3	60.8299	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH144603

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,475,043 - 123,475,198 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,127,833 - 129,127,987	NCBI	Rnor6.0
Rnor_5.0	3	135,613,309 - 135,613,463	UniSTS	Rnor5.0
RGSC_v3.4	3	124,230,686 - 124,230,840	UniSTS	RGSC3.4
Celera	3	122,205,075 - 122,205,229	UniSTS
RH 3.4 Map	3	1087.3	UniSTS
Cytogenetic Map	3	q36	UniSTS

BF400086

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,687,059 - 123,687,248 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,340,355 - 129,340,543	NCBI	Rnor6.0
Rnor_5.0	3	135,824,758 - 135,824,946	UniSTS	Rnor5.0
RGSC_v3.4	3	124,440,613 - 124,440,801	UniSTS	RGSC3.4
Celera	3	122,415,921 - 122,416,109	UniSTS
RH 3.4 Map	3	1088.0	UniSTS
Cytogenetic Map	3	q36	UniSTS

BF397900

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,431,448 - 123,431,573 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,077,985 - 129,078,109	NCBI	Rnor6.0
Rnor_5.0	3	135,565,719 - 135,565,843	UniSTS	Rnor5.0
RGSC_v3.4	3	124,187,173 - 124,187,297	UniSTS	RGSC3.4
Celera	3	122,161,835 - 122,161,959	UniSTS
RH 3.4 Map	3	1086.0	UniSTS
Cytogenetic Map	3	q36	UniSTS

BF405154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,396,742 - 123,396,925 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,043,289 - 129,043,471	NCBI	Rnor6.0
Rnor_5.0	3	135,531,148 - 135,531,330	UniSTS	Rnor5.0
RGSC_v3.4	3	124,152,279 - 124,152,461	UniSTS	RGSC3.4
Celera	3	122,127,326 - 122,127,508	UniSTS
RH 3.4 Map	3	1084.6	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH137684

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	143,848,460 - 143,848,708 (+)	Marker Load Pipeline
mRatBN7.2	3	123,395,734 - 123,395,982 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,042,281 - 129,042,528	NCBI	Rnor6.0
Rnor_5.0	3	135,530,140 - 135,530,387	UniSTS	Rnor5.0
RGSC_v3.4	3	124,151,271 - 124,151,518	UniSTS	RGSC3.4
Celera	3	122,126,318 - 122,126,565	UniSTS
RH 3.4 Map	3	1087.9	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH137907

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	123,421,169 - 123,421,301 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	129,067,715 - 129,067,846	NCBI	Rnor6.0
Rnor_5.0	3	135,555,449 - 135,555,580	UniSTS	Rnor5.0
RGSC_v3.4	3	124,176,903 - 124,177,034	UniSTS	RGSC3.4
Celera	3	122,151,736 - 122,151,867	UniSTS
Cytogenetic Map	3	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	4	46	112	61	58	34	10	34	6	149	71	93	32	57	24


RefSeq Transcripts	NM_001107781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007410 ⟹ ENSRNOP00000007410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	123,396,497 - 123,703,930 (-)	Ensembl
Rnor_6.0 Ensembl	3	129,043,043 - 129,357,491 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084829 ⟹ ENSRNOP00000071237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	129,042,742 - 129,357,348 (-)	Ensembl

RefSeq Acc Id:

NM_001107781 ⟹ NP_001101251

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	143,849,223 - 144,156,640 (-)	NCBI
mRatBN7.2	3	123,396,497 - 123,703,930 (-)	NCBI
Rnor_6.0	3	129,043,043 - 129,357,491 (-)	NCBI
Rnor_5.0	3	135,530,902 - 135,841,101 (-)	NCBI
RGSC_v3.4	3	124,152,033 - 124,457,585 (-)	RGD
Celera	3	122,127,080 - 122,432,709 (-)	RGD

Sequence:

show sequence

CCGGAGCAGCTGAATGGTCTCAGCGGACAGTCTTCCTAGGGGCAAGTCAGGCGGCTTGGGCATGCTCAGTAGCTGGGAGAGGTTTGGGAGGAGAGTAGAAAGCTTTGACTCTGCCCCCACCCCCTCCT
CTAGCCCCCGCCCCCCTTGCCCCTTCCCAGCCGTAGTAGTTCCCCAGCGTGCGCCAGTGGAGAGCAGGAACATGGCGCTCGGAGCGATAGAACAGATGTAGCAGCAGCGGAAAAGCAGATGAGGTACC
GCGACTTCACTGCTGACAGCCAGCCACCAGGGAGAGTTTGCACTGACAGAGAAGACAGTGAAGAATAGGCTTCCCTGTAGGTTGGCTCTTCAGCCTGCTCAGCACTGCCACTGGAGCTTTCTTAGCCT
CGCTACAGCCTCCGCATTTGTAGAAATACTCTGTGGTGAAATGCTTCTGTCTGTTGCCAAAATGAACACTGAAGAAAAATGAAGAAGACTGAAGAACTCCAACAAAAAATTTGCACAACAGAAGTAAC
CAAAATCTTCTGGAGTCTTTAATTCATCCACAGCCATCGTAAAGCAAAAAGTTTTTACATCATGTTTGGGAAGAAAAAGAAAAAGATCGAAATATCCGGCCCATCTAACTTTGAACACAGGGTTCATA
CTGGGTTTGATCCACAAGAGCAGAAGTTTACTGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGACACAGCCAACAGGCCCAAGCCTATGGTGGATCCATCATGCATCACACCCATACAACTGGCT
CCCATGAAGACAATCGTCAGAGGAAATAAATCCTGCAAGGAAAGCTCTATCAACGGTCTGCTAGAGGATTTCGACAACATCTCCGTGACTCGCTCCAACTCCCTAAGGAAAGAAAGCCCACCCACCCC
AGATCAGGGAGCAGCTAGCCGCATTCAAGGCCACTCCGAAGAAAACGGCTTCATTACTTTCTCACAATATTCTAGTGAATCTGATACTACTACGGACTACACAACTGAAAAGTATAGAGACAGGAGTC
TCTATGGAGACGACCTGGATCTGTACTATAGAGGCAGCCATGCAGCCAAGCAAAACGGGCATGCTATGAAGATGAAACATGGAGATGCCTACTATCCTGAGATGAAGCCTTTGAAATCCGACCTGGCC
AGATTCCCTGTCGACTATCACACACACTTGGACTCGCTGAGCAAAGCAAGTGAGTACGGTGACCTCAAGTGGGATTATCAGCGAGCCTCCAGTAGCTCCCCTCTGGACTACTCATTCCAGCTCACGCC
TTCCAGAACTGCAGGGACCAGCAGGTGCTCCAAGGAGAGTCTGGCATACAGTGAAAGTGATTGGGGACCCAGCTTTGATGACTATGATAGGAGGCCAAAATCATCCTACCTGCATCAGACAAGCCCTC
AGCCAGCCATGCGCCAGAGATCCAAGTCAGGCTCAGGGCTTCAGGAACCCATGATGCCATTTGGAGCAAGTGCATTTAAAACTCATCCTCAAGGACACTCGTACAACTCCTACACCTACCCTCGATTG
TCTGAGCCCACAATGTGCATTCCAAAGGTGGATTATGATCGAGCACAGATGGTCTTCAGTCCTCCACTGTCAGGGTCCGACACCTATCCCAGAGGCCCCACCAAACTACCTCAAAGTCAAAGCAAAGT
GGGCTACTCTTCAAGTAGCCACCAGTATCCTGGGTACCACAAAGCATCCCTATACCATCATCCGTCCCTGCAAACCAGTTCTCAGTACATCTCCACCGCTTCTTACTTGAGCTCTCTCAGTATCTCCT
CGAGCACCTACCCTCCACCCAGCTGGGGCTCCTCTTCAGACCAGCAGCCCTCTAGGGTATCCCATGAACAGTTTCGAGCTGCCCTGCAACTGGTGGTCAGCCCAGGAGACCCCAGGGAATATTTGGAT
AACTTTATTAAAATCGGAGAAGGGTCGACAGGCATCGTGTGCATTGCAACAGAGAAGCACACAGGCAAGCAAGTGGCGGTGAAGAAAATGGACCTCCGAAAGCAACAGAGACGGGAACTCCTTTTTAA
TGAGGTCGTGATAATGCGTGATTACCACCATGACAATGTAGTTGACATGTATAACAGCTACCTTGTTGGAGATGAGCTCTGGGTGGTCATGGAGTTTCTAGAAGGTGGTGCCTTGACAGACATCGTCA
CTCATACCAGAATGAATGAAGAACAGATAGCTACTGTCTGCCTGTCAGTTCTGAAAGCGCTGTCCTACCTTCATAACCAAGGAGTGATTCACAGGGACATAAAGAGTGACTCCATTCTTCTGACAAGC
GATGGCCGGATAAAGTTATCTGACTTTGGCTTCTGTGCTCAAGTTTCCAAAGAGGTGCCAAAGAGGAAGTCACTGGTGGGTACCCCATACTGGATGGCTCCTGAGGTGATTTCCAGGCTACCTTATGG
GACAGAGGTGGACATCTGGTCCCTCGGGATAATGGTGATAGAGATGATTGATGGTGAGCCTCCCTATTTCAATGAGCCTCCTCTGCAGGCCATGAGGAGGATCCGGGACAGTTTACCTCCAAGAGTGA
AGGACCTGCACAAGGTTTCTTCCATGCTCCGAGGATTCCTAGATCTTATGTTGGTGAGGGAGCCCTCTCAAAGAGCCACAGCTCAAGAACTTCTTGGACATCCATTCTTAAAATTGGCAGGCCCGCCA
TCTTGCATCGTTCCCCTCATGAGACAATATAGGCATCACTGAGAGGAGTCACATAAGATGCAAAGCTAGGCAAAGACATAAAAATGATTCAGGAGAACATGAGGAGACCCACAAAACATGCAAAGACC
TGTGTATTCTAAACCAGCTGATTGGTGGGACAGTGTGATGACCTGACCGGCAGGGTTCGACAGACCAGGGCATCTTCTAGTGTCTTAAATAGTAGGCATCTCTCCACTAACAGCTGGCATGGTCAATT
GGAGCATGGCTTTAATAAGTCATTATTATACATTTTCAGCCCTTCTTCCAGTGAATCAGAAGGACTCAGTACAAACTCCGTTACGATATATCCTAGCCACATGCAGGGTACCATATAGGATTTTCTAT
TATTGAAAGAATACTTTTCTGGCAAAAAAAAAGATAAAGAAAGGAAGAAAAGAAAATAAAAAGCACTTTTTTTCTTAATGGTAGCAGTGTAATGTATTTTGCAATGAATTTGTAATTTTTCTGTACAA
TAGTTTTGATAATTTATAGTACTTTGATGTCACGTAGCCATTGTCTCGGTTGAAGTAATACTTGTTTACTAGCAGGCGTTTGAACAAAGCCTTTCCTACTTTTTTATCCCTTTCAGAGAACCAACGAT
TCTTTAGGAACTTTGAATACTAAATGACCCTCAGTCACCGTCAGCTTTAGCAGAATATCTTTCTTATCTTAACAAGTGTCTTATGTGGTGGAGGAAGAGTTAAGGGGGATGGTGGTGGTGCGGACACT
TCACTTACCCAACCAAATATAACGAAATAACATTTGAGCCACAGAATTGCCATATGATTCCTTGAGATGATGCTAAGTATTTTGAAAAATTACATATTCCTGCAAAGATTCTGGTAACACCATTTTTT
TTCTTTTGTAGAACCAGATATTACCCTTGATGCCTCCCTTCAAATAGGTGTGGCATCCTCAGTGGCCAAATTTCCCTCCCAGGGAGTAATTTTAATGCTGGGATCTTTGGACTCAGATCCCCAGGTAG
AATGTTTCAGTGAGACCATGGAAATGCCAGGCTCACAAAGGGAGAATGAATAAGGCAAGTTGTTTGGTCCGTCACTGTTTCTAAGACTCTGTATGCTAGCACACCAAACTCTTGTCTGTATTTACCTT
CATGCCACAGTATTAATCACTGTTATTCATGTATTGTGCTGAAAGTCTGAACGGATGATAGAGGATGAATTAGCAAGGGGGTACTTTACCAAGTATGGTCTAACTTCCGTGGTGGCCGTGTTATAATG
TGTTTCTGACATAAGGAGAGTTTGTGCTGCTGTCTCGATCTTCCTGAATGTTGATAAAAATGAATGACTACT

hide sequence

RefSeq Acc Id:

XM_017591756 ⟹ XP_017447245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	143,848,404 - 144,156,674 (-)	NCBI
mRatBN7.2	3	123,395,678 - 123,703,967 (-)	NCBI
Rnor_6.0	3	129,042,232 - 129,357,512 (-)	NCBI

Sequence:

show sequence

ACAGCCGGCTGCTCCGAAAACCCGGAGCAGCTGAATGGTCTCAGCGGACAGTCTTCCTAGGGGCAAGTCAGGCGGCTTGGGCATGCTCAGTAGCTGGGAGAGGTTTGGGAGGAGAGTAGAAAGCTTTG
ACTCTGCCCCCACCCCCTCCTCTAGCCCCCGCCCCCCTTGCCCCTTCCCAGCCGTAGTAGTTCCCCAGCGTGCGCCAGTGGAGAGCAGGAACATGGCGCTCGGAGCGATAGAACAGATGTAGCAGCAG
CGGAAAAGCAGATGAGGTACCGCGACTTCACTGCTGACAGCCAGCCACCAGAAATACTCTGTGGTGAAATGCTTCTGTCTGTTGCCAAAATGAACACTGAAGAAAAATGAAGAAGACTGAAGAACTCC
AACAAAAAATTTGCACAACAGAAGTAACCAAAATCTTCTGGAGTCTTTAATTCATCCACAGCCATCGTAAAGCAAAAAGTTTTTACATCATGTTTGGGAAGAAAAAGAAAAAGATCGAAATATCCGGC
CCATCTAACTTTGAACACAGGGTTCATACTGGGTTTGATCCACAAGAGCAGAAGTTTACTGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGACACAGCCAACAGGCCCAAGCCTATGGTGGATCC
ATCATGCATCACACCCATACAACTGGCTCCCATGAAGACAATCGTCAGAGGAAATAAATCCTGCAAGGAAAGCTCTATCAACGGTCTGCTAGAGGATTTCGACAACATCTCCGTGACTCGCTCCAACT
CCCTAAGGAAAGAAAGCCCACCCACCCCAGATCAGGGAGCAGCTAGCCGCATTCAAGGCCACTCCGAAGAAAACGGCTTCATTACTTTCTCACAATATTCTAGTGAATCTGATACTACTACGGACTAC
ACAACTGAAAAGTATAGAGACAGGAGTCTCTATGGAGACGACCTGGATCTGTACTATAGAGGCAGCCATGCAGCCAAGCAAAACGGGCATGCTATGAAGATGAAACATGGAGATGCCTACTATCCTGA
GATGAAGCCTTTGAAATCCGACCTGGCCAGATTCCCTGTCGACTATCACACACACTTGGACTCGCTGAGCAAAGCAAGTGAGTACGGTGACCTCAAGTGGGATTATCAGCGAGCCTCCAGTAGCTCCC
CTCTGGACTACTCATTCCAGCTCACGCCTTCCAGAACTGCAGGGACCAGCAGGTGCTCCAAGGAGAGTCTGGCATACAGTGAAAGTGATTGGGGACCCAGCTTTGATGACTATGATAGGAGGCCAAAA
TCATCCTACCTGCATCAGACAAGCCCTCAGCCAGCCATGCGCCAGAGATCCAAGTCAGGCTCAGGGCTTCAGGAACCCATGATGCCATTTGGAGCAAGTGCATTTAAAACTCATCCTCAAGGACACTC
GTACAACTCCTACACCTACCCTCGATTGTCTGAGCCCACAATGTGCATTCCAAAGGTGGATTATGATCGAGCACAGATGGTCTTCAGTCCTCCACTGTCAGGGTCCGACACCTATCCCAGAGGCCCCA
CCAAACTACCTCAAAGTCAAAGCAAAGTGGGCTACTCTTCAAGTAGCCACCAGTATCCTGGGTACCACAAAGCATCCCTATACCATCATCCGTCCCTGCAAACCAGTTCTCAGTACATCTCCACCGCT
TCTTACTTGAGCTCTCTCAGTATCTCCTCGAGCACCTACCCTCCACCCAGCTGGGGCTCCTCTTCAGACCAGCAGCCCTCTAGGGTATCCCATGAACAGTTTCGAGCTGCCCTGCAACTGGTGGTCAG
CCCAGGAGACCCCAGGGAATATTTGGATAACTTTATTAAAATCGGAGAAGGGTCGACAGGCATCGTGTGCATTGCAACAGAGAAGCACACAGGCAAGCAAGTGGCGGTGAAGAAAATGGACCTCCGAA
AGCAACAGAGACGGGAACTCCTTTTTAATGAGGTCGTGATAATGCGTGATTACCACCATGACAATGTAGTTGACATGTATAACAGCTACCTTGTTGGAGATGAGCTCTGGGTGGTCATGGAGTTTCTA
GAAGGTGGTGCCTTGACAGACATCGTCACTCATACCAGAATGAATGAAGAACAGATAGCTACTGTCTGCCTGTCAGTTCTGAAAGCGCTGTCCTACCTTCATAACCAAGGAGTGATTCACAGGGACAT
AAAGAGTGACTCCATTCTTCTGACAAGCGATGGCCGGATAAAGTTATCTGACTTTGGCTTCTGTGCTCAAGTTTCCAAAGAGGTGCCAAAGAGGAAGTCACTGGTGGGTACCCCATACTGGATGGCTC
CTGAGGTGATTTCCAGGCTACCTTATGGGACAGAGGTGGACATCTGGTCCCTCGGGATAATGGTGATAGAGATGATTGATGGTGAGCCTCCCTATTTCAATGAGCCTCCTCTGCAGGCCATGAGGAGG
ATCCGGGACAGTTTACCTCCAAGAGTGAAGGACCTGCACAAGGTTTCTTCCATGCTCCGAGGATTCCTAGATCTTATGTTGGTGAGGGAGCCCTCTCAAAGAGCCACAGCTCAAGAACTTCTTGGACA
TCCATTCTTAAAATTGGCAGGCCCGCCATCTTGCATCGTTCCCCTCATGAGACAATATAGGCATCACTGAGAGGAGTCACATAAGATGCAAAGCTAGGCAAAGACATAAAAATGATTCAGGAGAACAT
GAGGAGACCCACAAAACATGCAAAGACCTGTGTATTCTAAACCAGCTGATTGGTGGGACAGTGTGATGACCTGACCGGCAGGGTTCGACAGACCAGGGCATCTTCTAGTGTCTTAAATAGTAGGCATC
TCTCCACTAACAGCTGGCATGGTCAATTGGAGCATGGCTTTAATAAGTCATTATTATACATTTTCAGCCCTTCTTCCAGTGAATCAGAAGGACTCAGTACAAACTCCGTTACGATATATCCTAGCCAC
ATGCAGGGTACCATATAGGATTTTCTATTATTGAAAGAATACTTTTCTGGCAAAAAAAAAGATAAAGAAAGGAAGAAAAGAAAATAAAAAGCACTTTTTTTCTTAATGGTAGCAGTGTAATGTATTTT
GCAATGAATTTGTAATTTTTCTGTACAATAGTTTTGATAATTTATAGTACTTTGATGTCACGTAGCCATTGTCTCGGTTGAAGTAATACTTGTTTACTAGCAGGCGTTTGAACAAAGCCTTTCCTACT
TTTTTATCCCTTTCAGAGAACCAACGATTCTTTAGGAACTTTGAATACTAAATGACCCTCAGTCACCGTCAGCTTTAGCAGAATATCTTTCTTATCTTAACAAGTGTCTTATGTGGTGGAGGAAGAGT
TAAGGGGGATGGTGGTGGTGCGGACACTTCACTTACCCAACCAAATATAACGAAATAACATTTGAGCCACAGAATTGCCATATGATTCCTTGAGATGATGCTAAGTATTTTGAAAAATTACATATTCC
TGCAAAGATTCTGGTAACACCATTTTTTTTCTTTTGTAGAACCAGATATTACCCTTGATGCCTCCCTTCAAATAGGTGTGGCATCCTCAGTGGCCAAATTTCCCTCCCAGGGAGTAATTTTAATGCTG
GGATCTTTGGACTCAGATCCCCAGGTAGAATGTTTCAGTGAGACCATGGAAATGCCAGGCTCACAAAGGGAGAATGAATAAGGCAAGTTGTTTGGTCCGTCACTGTTTCTAAGACTCTGTATGCTAGC
ACACCAAACTCTTGTCTGTATTTACCTTCATGCCACAGTATTAATCACTGTTATTCATGTATTGTGCTGAAAGTCTGAACGGATGATAGAGGATGAATTAGCAAGGGGGTACTTTACCAAGTATGGTC
TAACTTCCGTGGTGGCCGTGTTATAATGTGTTTCTGACATAAGGAGAGTTTGTGCTGCTGTCTCGATCTTCCTGAATGTTGATAAAAATGAATGACTACTACAATACATTTTGTGTTGCTTGTTGGAT
GAATTTGCATGTTAACTGTAGGCCAATATAGATTTGCCTTTAAAACTCTGGAAGCGCTACATAGTCATCATTAGTTTCTATTAATTATGCATCAGACAAAAGCCATTTGTTACCAAACTGGAAAACCA
GAGGCTTTACTTAGTGACTTTGCAGACTGTAACAAATGGGAAAATAAATTTGTGAAGATACTCTGGTTGATCTAAGCATAATTAAGATTTTTTGTAATTAATAGGTTGATAATTATTTATTATAGTTT
AAAAGGAAAAAAGGCATAAAATGACCTTCTGCTGATTAGCTGTTCAGTTTTAACCCAAACTGGAAATGCTTTACAATCAATAGAATCTATAACTTTGTTTTATAAAACACAGAACATCAATGTTTTAT
GAAAACTGTTAAAAGTCTTAATATAAATATGTAAGAATAACAGCAATCTCAATCCCCAAAATTGCAATCCTAAAATGTCACAAAACAGAATGTCATAATTCAGCCAGGACTATGTAGGAGAGGAAAGA
AGAGTCAATCAGAATCACTTTTAACCAGAATCAACATTAAAAAAATTCATTGCAAAATCTGCAAAAAAAAAAAAATAGCAGATTTTGGACTCAAACAACTTTCGACAGTGTAATGGAAATTTTTTTCT
GTAATTTTCTTATCAATGGGCATTTTTTACAGTATTCGGTGAGTTTACTAAATGTTACTGTAGCTTAAAGGAATCTGTGAGCAGTGAGCATTGGCAGAAGCTGCACCACAAATAAAGTAAGTGTTTGC
CTTTTTCCCACCGTG

hide sequence

RefSeq Acc Id:

XM_017591757 ⟹ XP_017447246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	143,848,404 - 144,057,873 (-)	NCBI
mRatBN7.2	3	123,395,678 - 123,604,729 (-)	NCBI
Rnor_6.0	3	129,042,232 - 129,256,582 (-)	NCBI

Sequence:

show sequence

TTTAGGATTCCAAGTCCATGGGATGGTGCTACCCACAGTGGCCATTTTTCCCATGTCATTAATA
CAATGAAGATAATGCCTCATAGACATGCCCACAGAAGTCTGAAGGAGATATTTTGTTGAGACTCTCTTCTCAGAAATACTCTGTGGTGAAATGCTTCTGTCTGTTGCCAAAATGAACACTGAAGAAAA
ATGAAGAAGACTGAAGAACTCCAACAAAAAATTTGCACAACAGAAGTAACCAAAATCTTCTGGAGTCTTTAATTCATCCACAGCCATCGTAAAGCAAAAAGTTTTTACATCATGTTTGGGAAGAAAAA
GAAAAAGATCGAAATATCCGGCCCATCTAACTTTGAACACAGGGTTCATACTGGGTTTGATCCACAAGAGCAGAAGTTTACTGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGACACAGCCAACA
GGCCCAAGCCTATGGTGGATCCATCATGCATCACACCCATACAACTGGCTCCCATGAAGACAATCGTCAGAGGAAATAAATCCTGCAAGGAAAGCTCTATCAACGGTCTGCTAGAGGATTTCGACAAC
ATCTCCGTGACTCGCTCCAACTCCCTAAGGAAAGAAAGCCCACCCACCCCAGATCAGGGAGCAGCTAGCCGCATTCAAGGCCACTCCGAAGAAAACGGCTTCATTACTTTCTCACAATATTCTAGTGA
ATCTGATACTACTACGGACTACACAACTGAAAAGTATAGAGACAGGAGTCTCTATGGAGACGACCTGGATCTGTACTATAGAGGCAGCCATGCAGCCAAGCAAAACGGGCATGCTATGAAGATGAAAC
ATGGAGATGCCTACTATCCTGAGATGAAGCCTTTGAAATCCGACCTGGCCAGATTCCCTGTCGACTATCACACACACTTGGACTCGCTGAGCAAAGCAAGTGAGTACGGTGACCTCAAGTGGGATTAT
CAGCGAGCCTCCAGTAGCTCCCCTCTGGACTACTCATTCCAGCTCACGCCTTCCAGAACTGCAGGGACCAGCAGGTGCTCCAAGGAGAGTCTGGCATACAGTGAAAGTGATTGGGGACCCAGCTTTGA
TGACTATGATAGGAGGCCAAAATCATCCTACCTGCATCAGACAAGCCCTCAGCCAGCCATGCGCCAGAGATCCAAGTCAGGCTCAGGGCTTCAGGAACCCATGATGCCATTTGGAGCAAGTGCATTTA
AAACTCATCCTCAAGGACACTCGTACAACTCCTACACCTACCCTCGATTGTCTGAGCCCACAATGTGCATTCCAAAGGTGGATTATGATCGAGCACAGATGGTCTTCAGTCCTCCACTGTCAGGGTCC
GACACCTATCCCAGAGGCCCCACCAAACTACCTCAAAGTCAAAGCAAAGTGGGCTACTCTTCAAGTAGCCACCAGTATCCTGGGTACCACAAAGCATCCCTATACCATCATCCGTCCCTGCAAACCAG
TTCTCAGTACATCTCCACCGCTTCTTACTTGAGCTCTCTCAGTATCTCCTCGAGCACCTACCCTCCACCCAGCTGGGGCTCCTCTTCAGACCAGCAGCCCTCTAGGGTATCCCATGAACAGTTTCGAG
CTGCCCTGCAACTGGTGGTCAGCCCAGGAGACCCCAGGGAATATTTGGATAACTTTATTAAAATCGGAGAAGGGTCGACAGGCATCGTGTGCATTGCAACAGAGAAGCACACAGGCAAGCAAGTGGCG
GTGAAGAAAATGGACCTCCGAAAGCAACAGAGACGGGAACTCCTTTTTAATGAGGTCGTGATAATGCGTGATTACCACCATGACAATGTAGTTGACATGTATAACAGCTACCTTGTTGGAGATGAGCT
CTGGGTGGTCATGGAGTTTCTAGAAGGTGGTGCCTTGACAGACATCGTCACTCATACCAGAATGAATGAAGAACAGATAGCTACTGTCTGCCTGTCAGTTCTGAAAGCGCTGTCCTACCTTCATAACC
AAGGAGTGATTCACAGGGACATAAAGAGTGACTCCATTCTTCTGACAAGCGATGGCCGGATAAAGTTATCTGACTTTGGCTTCTGTGCTCAAGTTTCCAAAGAGGTGCCAAAGAGGAAGTCACTGGTG
GGTACCCCATACTGGATGGCTCCTGAGGTGATTTCCAGGCTACCTTATGGGACAGAGGTGGACATCTGGTCCCTCGGGATAATGGTGATAGAGATGATTGATGGTGAGCCTCCCTATTTCAATGAGCC
TCCTCTGCAGGCCATGAGGAGGATCCGGGACAGTTTACCTCCAAGAGTGAAGGACCTGCACAAGGTTTCTTCCATGCTCCGAGGATTCCTAGATCTTATGTTGGTGAGGGAGCCCTCTCAAAGAGCCA
CAGCTCAAGAACTTCTTGGACATCCATTCTTAAAATTGGCAGGCCCGCCATCTTGCATCGTTCCCCTCATGAGACAATATAGGCATCACTGAGAGGAGTCACATAAGATGCAAAGCTAGGCAAAGACA
TAAAAATGATTCAGGAGAACATGAGGAGACCCACAAAACATGCAAAGACCTGTGTATTCTAAACCAGCTGATTGGTGGGACAGTGTGATGACCTGACCGGCAGGGTTCGACAGACCAGGGCATCTTCT
AGTGTCTTAAATAGTAGGCATCTCTCCACTAACAGCTGGCATGGTCAATTGGAGCATGGCTTTAATAAGTCATTATTATACATTTTCAGCCCTTCTTCCAGTGAATCAGAAGGACTCAGTACAAACTC
CGTTACGATATATCCTAGCCACATGCAGGGTACCATATAGGATTTTCTATTATTGAAAGAATACTTTTCTGGCAAAAAAAAAGATAAAGAAAGGAAGAAAAGAAAATAAAAAGCACTTTTTTTCTTAA
TGGTAGCAGTGTAATGTATTTTGCAATGAATTTGTAATTTTTCTGTACAATAGTTTTGATAATTTATAGTACTTTGATGTCACGTAGCCATTGTCTCGGTTGAAGTAATACTTGTTTACTAGCAGGCG
TTTGAACAAAGCCTTTCCTACTTTTTTATCCCTTTCAGAGAACCAACGATTCTTTAGGAACTTTGAATACTAAATGACCCTCAGTCACCGTCAGCTTTAGCAGAATATCTTTCTTATCTTAACAAGTG
TCTTATGTGGTGGAGGAAGAGTTAAGGGGGATGGTGGTGGTGCGGACACTTCACTTACCCAACCAAATATAACGAAATAACATTTGAGCCACAGAATTGCCATATGATTCCTTGAGATGATGCTAAGT
ATTTTGAAAAATTACATATTCCTGCAAAGATTCTGGTAACACCATTTTTTTTCTTTTGTAGAACCAGATATTACCCTTGATGCCTCCCTTCAAATAGGTGTGGCATCCTCAGTGGCCAAATTTCCCTC
CCAGGGAGTAATTTTAATGCTGGGATCTTTGGACTCAGATCCCCAGGTAGAATGTTTCAGTGAGACCATGGAAATGCCAGGCTCACAAAGGGAGAATGAATAAGGCAAGTTGTTTGGTCCGTCACTGT
TTCTAAGACTCTGTATGCTAGCACACCAAACTCTTGTCTGTATTTACCTTCATGCCACAGTATTAATCACTGTTATTCATGTATTGTGCTGAAAGTCTGAACGGATGATAGAGGATGAATTAGCAAGG
GGGTACTTTACCAAGTATGGTCTAACTTCCGTGGTGGCCGTGTTATAATGTGTTTCTGACATAAGGAGAGTTTGTGCTGCTGTCTCGATCTTCCTGAATGTTGATAAAAATGAATGACTACTACAATA
CATTTTGTGTTGCTTGTTGGATGAATTTGCATGTTAACTGTAGGCCAATATAGATTTGCCTTTAAAACTCTGGAAGCGCTACATAGTCATCATTAGTTTCTATTAATTATGCATCAGACAAAAGCCAT
TTGTTACCAAACTGGAAAACCAGAGGCTTTACTTAGTGACTTTGCAGACTGTAACAAATGGGAAAATAAATTTGTGAAGATACTCTGGTTGATCTAAGCATAATTAAGATTTTTTGTAATTAATAGGT
TGATAATTATTTATTATAGTTTAAAAGGAAAAAAGGCATAAAATGACCTTCTGCTGATTAGCTGTTCAGTTTTAACCCAAACTGGAAATGCTTTACAATCAATAGAATCTATAACTTTGTTTTATAAA
ACACAGAACATCAATGTTTTATGAAAACTGTTAAAAGTCTTAATATAAATATGTAAGAATAACAGCAATCTCAATCCCCAAAATTGCAATCCTAAAATGTCACAAAACAGAATGTCATAATTCAGCCA
GGACTATGTAGGAGAGGAAAGAAGAGTCAATCAGAATCACTTTTAACCAGAATCAACATTAAAAAAATTCATTGCAAAATCTGCAAAAAAAAAAAAATAGCAGATTTTGGACTCAAACAACTTTCGAC
AGTGTAATGGAAATTTTTTTCTGTAATTTTCTTATCAATGGGCATTTTTTACAGTATTCGGTGAGTTTACTAAATGTTACTGTAGCTTAAAGGAATCTGTGAGCAGTGAGCATTGGCAGAAGCTGCAC
CACAAATAAAGTAAGTGTTTGCCTTTTTCCCACCGTG

hide sequence

RefSeq Acc Id:

XM_039105018 ⟹ XP_038960946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	143,848,404 - 144,156,648 (-)	NCBI
mRatBN7.2	3	123,395,678 - 123,703,967 (-)	NCBI


Protein RefSeqs	NP_001101251	(Get FASTA)	NCBI Sequence Viewer
	NP_001420959	(Get FASTA)	NCBI Sequence Viewer
	NP_001420960	(Get FASTA)	NCBI Sequence Viewer
	XP_017447245	(Get FASTA)	NCBI Sequence Viewer
	XP_017447246	(Get FASTA)	NCBI Sequence Viewer
	XP_038960946	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A280	(Get FASTA)	NCBI Sequence Viewer
	EDL80300	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007410
	ENSRNOP00000007410.3

RefSeq Acc Id:

NP_001101251 ⟸ NM_001107781

- UniProtKB:

D4A280 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKSCKESSINGLLEDFDNISVTRSNSLRKESPPTPDQGAASRIQGHSEENGFITF
SQYSSESDTTTDYTTEKYRDRSLYGDDLDLYYRGSHAAKQNGHAMKMKHGDAYYPEMKPLKSDLARFPVDYHTHLDSLSKASEYGDLKWDYQRASSSSPLDYSFQLTPSRTAGTSRCSKESLAYSESD
WGPSFDDYDRRPKSSYLHQTSPQPAMRQRSKSGSGLQEPMMPFGASAFKTHPQGHSYNSYTYPRLSEPTMCIPKVDYDRAQMVFSPPLSGSDTYPRGPTKLPQSQSKVGYSSSSHQYPGYHKASLYHH
PSLQTSSQYISTASYLSSLSISSSTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSY
LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP
PYFNEPPLQAMRRIRDSLPPRVKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAGPPSCIVPLMRQYRHH

hide sequence

RefSeq Acc Id:

XP_017447245 ⟸ XM_017591756

- Peptide Label:

isoform X1

- Sequence:

show sequence

MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKSCKESSINGLLEDFDNISVTRSNSLRKESPPTPDQGAASRIQGHSEENGFITF
SQYSSESDTTTDYTTEKYRDRSLYGDDLDLYYRGSHAAKQNGHAMKMKHGDAYYPEMKPLKSDLARFPVDYHTHLDSLSKASEYGDLKWDYQRASSSSPLDYSFQLTPSRTAGTSRCSKESLAYSESD
WGPSFDDYDRRPKSSYLHQTSPQPAMRQRSKSGSGLQEPMMPFGASAFKTHPQGHSYNSYTYPRLSEPTMCIPKVDYDRAQMVFSPPLSGSDTYPRGPTKLPQSQSKVGYSSSSHQYPGYHKASLYHH
PSLQTSSQYISTASYLSSLSISSSTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSY
LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP
PYFNEPPLQAMRRIRDSLPPRVKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAGPPSCIVPLMRQYRHH

hide sequence

RefSeq Acc Id:	XP_017447246 ⟸ XM_017591757
- Peptide Label:	isoform X1
- UniProtKB:	D4A280 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKSCKESSINGLLEDFDNISVTRSNSLRKESPPTPDQGAASRIQGHSEENGFITF SQYSSESDTTTDYTTEKYRDRSLYGDDLDLYYRGSHAAKQNGHAMKMKHGDAYYPEMKPLKSDLARFPVDYHTHLDSLSKASEYGDLKWDYQRASSSSPLDYSFQLTPSRTAGTSRCSKESLAYSESD WGPSFDDYDRRPKSSYLHQTSPQPAMRQRSKSGSGLQEPMMPFGASAFKTHPQGHSYNSYTYPRLSEPTMCIPKVDYDRAQMVFSPPLSGSDTYPRGPTKLPQSQSKVGYSSSSHQYPGYHKASLYHH PSLQTSSQYISTASYLSSLSISSSTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSY LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP PYFNEPPLQAMRRIRDSLPPRVKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAGPPSCIVPLMRQYRHH hide sequence

Ensembl Acc Id:

ENSRNOP00000071237 ⟸ ENSRNOT00000084829

Ensembl Acc Id:

ENSRNOP00000007410 ⟸ ENSRNOT00000007410

Protein Domains

CRIB Protein kinase

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A280-F1-model_v2	AlphaFold	D4A280	1-718	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13692468

Promoter ID:

EPDNEW_R2987

Type:

single initiation site

Name:

Pak7_1

Description:

p21 activated kinase 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	129,357,329 - 129,357,389	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-47725	BioCyc
Ensembl Genes	ENSRNOG00000005509	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007410	ENTREZGENE
	ENSRNOT00000007410.5	UniProtKB/Swiss-Prot
Gene3D-CATH	3.90.810.10	UniProtKB/Swiss-Prot
	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
InterPro	CRIB_dom	UniProtKB/Swiss-Prot
	CRIB_dom_sf	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	PAK3-like	UniProtKB/Swiss-Prot
	PAK5	UniProtKB/Swiss-Prot
	PAK_BD	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot
KEGG Report	rno:311450	UniProtKB/Swiss-Prot
NCBI Gene	311450	ENTREZGENE
PANTHER	NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE	UniProtKB/Swiss-Prot
	SERINE/THREONINE-PROTEIN KINASE SAMKA-RELATED-RELATED	UniProtKB/Swiss-Prot
Pfam	PBD	UniProtKB/Swiss-Prot
	Pkinase	UniProtKB/Swiss-Prot
PhenoGen	Pak5	PhenoGen
PROSITE	CRIB	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005509	RatGTEx
SMART	PBD	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot
UniProt	D4A280	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-06-25	Pak5	p21 (RAC1) activated kinase 5	Pak7	p21 (RAC1) activated kinase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-05-12	Pak7	p21 (RAC1) activated kinase 7	Pak7	p21 protein (Cdc42/Rac)-activated kinase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-05-27	Pak7	p21 protein (Cdc42/Rac)-activated kinase 7	Pak7	p21 (CDKN1A)-activated kinase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Pak7	p21 (CDKN1A)-activated kinase 7	Pak7_predicted	p21 (CDKN1A)-activated kinase 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pak7_predicted	p21 (CDKN1A)-activated kinase 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)