Ube2k (ubiquitin-conjugating enzyme E2K) - Rat Genome Database

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Gene: Ube2k (ubiquitin-conjugating enzyme E2K) Rattus norvegicus
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Symbol: Ube2k
Name: ubiquitin-conjugating enzyme E2K
RGD ID: 1311626
Description: Predicted to enable ubiquitin conjugating enzyme activity; ubiquitin protein ligase binding activity; and ubiquitin-ubiquitin ligase activity. Acts upstream of or within intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress. Predicted to be located in cytoplasm and filopodium tip. Predicted to be active in nucleus. Orthologous to human UBE2K (ubiquitin conjugating enzyme E2 K); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E2-25k; Hip2; huntingtin interacting protein 2; Hypg; Lig; LOC289623; ubiquitin-conjugating enzyme E2 K; ubiquitin-conjugating enzyme E2-25K; ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,011,681 - 43,077,825 (-)NCBIGRCr8
mRatBN7.21442,658,016 - 42,718,899 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,658,016 - 42,718,630 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,011,647 - 43,072,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,311,686 - 44,372,016 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,791,658 - 42,852,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,289,247 - 44,348,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,289,247 - 44,348,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,108,859 - 44,168,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,349,287 - 45,411,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,354,342 - 45,414,183 (-)NCBI
Celera1441,809,022 - 41,869,333 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRatHyperglycinemia, Lactic Acidosis, and Seizures  ISOUBE2K (Homo sapiens)8554872ClinVar Annotator: match by term: HYPERGLYCINEMIA more ...ClinVarPMID:28492532

1 to 20 of 92 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRat(1->4)-beta-D-glucan multiple interactionsISOUbe2k (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of UBE2K mRNACTDPMID:36331819
Ube2kRat1,2-dichloroethane increases expressionISOUbe2k (Mus musculus)6480464ethylene dichloride results in increased expression of UBE2K mRNACTDPMID:28960355
Ube2kRat1,2-dimethylhydrazine multiple interactionsISOUbe2k (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of UBE2K mRNACTDPMID:22206623
Ube2kRat1,2-dimethylhydrazine decreases expressionISOUbe2k (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of UBE2K mRNACTDPMID:22206623
Ube2kRat17alpha-ethynylestradiol multiple interactionsISOUbe2k (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of UBE2K mRNACTDPMID:17942748
Ube2kRat17alpha-ethynylestradiol increases expressionISOUbe2k (Mus musculus)6480464Ethinyl Estradiol results in increased expression of UBE2K mRNACTDPMID:17555576 and PMID:17942748
Ube2kRat17beta-estradiol increases expressionISOUbe2k (Mus musculus)6480464Estradiol results in increased expression of UBE2K mRNACTDPMID:39298647
Ube2kRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOUbe2k (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of UBE2K mRNACTDPMID:17942748
Ube2kRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOUbe2k (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of UBE2K mRNACTDPMID:21570461
Ube2kRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOUbe2k (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of UBE2K mRNACTDPMID:19465110
Ube2kRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of UBE2K mRNACTDPMID:21346803
Ube2kRat2,6-dimethoxyphenol multiple interactionsISOUBE2K (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of UBE2K proteinCTDPMID:38598786
Ube2kRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of UBE2K mRNACTDPMID:21346803
Ube2kRat2-methylcholine affects expressionISOUBE2K (Homo sapiens)6480464beta-methylcholine affects the expression of UBE2K mRNACTDPMID:21179406
Ube2kRat3H-1,2-dithiole-3-thione increases expressionISOUbe2k (Mus musculus)64804641 and 2-dithiol-3-thione results in increased expression of UBE2K mRNACTDPMID:15375163
Ube2kRat4,4'-sulfonyldiphenol increases expressionISOUbe2k (Mus musculus)6480464bisphenol S results in increased expression of UBE2K mRNACTDPMID:39298647
Ube2kRatacetylsalicylic acid increases expressionISOUBE2K (Homo sapiens)6480464Aspirin results in increased expression of UBE2K mRNACTDPMID:11906190
Ube2kRataflatoxin B1 decreases expressionISOUBE2K (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of UBE2K mRNACTDPMID:21641981
Ube2kRatall-trans-retinoic acid decreases expressionISOUBE2K (Homo sapiens)6480464Tretinoin results in decreased expression of UBE2K mRNACTDPMID:33167477
Ube2kRataminoglutethimide decreases expressionISOUBE2K (Homo sapiens)6480464Aminoglutethimide results in decreased expression of UBE2K proteinCTDPMID:26102013

1 to 20 of 92 rows

Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRatcellular response to interferon-beta involved_inISOUBE2K (Homo sapiens)1624291 PMID:24882218RGDPMID:24882218
Ube2kRatcellular response to interferon-beta involved_inIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatfree ubiquitin chain polymerization involved_inISOUBE2K (Homo sapiens)1624291 PMID:24882218RGDPMID:24882218
Ube2kRatfree ubiquitin chain polymerization involved_inIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatintrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress acts_upstream_of_or_withinIMP 8554156PMID:18710920MGI 
Ube2kRatpositive regulation of peptidyl-threonine phosphorylation involved_inISOUBE2K (Homo sapiens)1624291 PMID:24882218RGDPMID:24882218
Ube2kRatpositive regulation of tumor necrosis factor-mediated signaling pathway involved_inISOUBE2K (Homo sapiens)1624291 PMID:26707646RGDPMID:26707646
Ube2kRatpositive regulation of tumor necrosis factor-mediated signaling pathway involved_inIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatpositive regulation of type I interferon-mediated signaling pathway involved_inISOUBE2K (Homo sapiens)1624291 PMID:24882218RGDPMID:24882218
Ube2kRatpositive regulation of type I interferon-mediated signaling pathway involved_inIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatprotein K48-linked ubiquitination involved_inISOUBE2K (Homo sapiens)1624291 PMID:20061386RGDPMID:20061386
Ube2kRatprotein K48-linked ubiquitination involved_inIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatprotein polyubiquitination involved_inIBAFB:FBgn0000173 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ube2kRatregulation of proteasomal ubiquitin-dependent protein catabolic process acts_upstream_of_or_withinISOUbe2k (Mus musculus)1624291 PMID:18710920RGDPMID:18710920
1 to 14 of 14 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRatcytoplasm located_inISOUbe2k (Mus musculus)1624291 PMID:18511602RGDPMID:18511602
Ube2kRatfilopodium tip located_inISOUbe2k (Mus musculus)1624291 PMID:18511602RGDPMID:18511602
Ube2kRatnucleus is_active_inIBAFB:FBgn0000173 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ube2kRatnucleus located_inISOUbe2k (Mus musculus)1624291 PMID:18511602RGDPMID:18511602

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRatATP binding enablesIEAUniRule:UR0001418271600115GO_REF:0000104UniProtGO_REF:0000104
Ube2kRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Ube2kRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Ube2kRatprotein binding enablesISOUBE2K (Homo sapiens)1624291UniProtKB:O00522 more ...RGDPMID:17500595 more ...
Ube2kRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
Ube2kRatubiquitin conjugating enzyme activity enablesIBAFB:FBgn0000173 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ube2kRatubiquitin conjugating enzyme activity enablesIEAEC:2.3.2.231600115GO_REF:0000003UniProtGO_REF:0000003
Ube2kRatubiquitin protein ligase binding enablesISOUBE2K (Homo sapiens)1624291UniProtKB:P38398 more ...RGDPMID:16714285 more ...
Ube2kRatubiquitin protein ligase binding enablesIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatubiquitin-protein transferase activity enablesISOUBE2K (Homo sapiens)1624291 PMID:20061386RGDPMID:20061386
Ube2kRatubiquitin-protein transferase activity enablesIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
Ube2kRatubiquitin-ubiquitin ligase activity enablesISOUBE2K (Homo sapiens)1624291 PMID:17873885RGDPMID:17873885
Ube2kRatubiquitin-ubiquitin ligase activity enablesIEAUniProtKB:P61086 and ensembl:ENSP000002614271600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 13 of 13 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2kRatubiquitin/proteasome degradation pathway  IEA 6907045 KEGGrno:04120

BioCyc Pathways


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. E2-25K/Hip-2 regulates caspase-12 in ER stress-mediated Abeta neurotoxicity. Song S, etal., J Cell Biol. 2008 Aug 25;182(4):675-84. doi: 10.1083/jcb.200711066. Epub 2008 Aug 18.
PMID:14760703   PMID:16714285   PMID:17873885   PMID:18410486   PMID:18511602   PMID:18729231   PMID:20061386   PMID:23376485   PMID:24882218   PMID:26707646  



Ube2k
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,011,681 - 43,077,825 (-)NCBIGRCr8
mRatBN7.21442,658,016 - 42,718,899 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,658,016 - 42,718,630 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,011,647 - 43,072,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,311,686 - 44,372,016 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,791,658 - 42,852,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,289,247 - 44,348,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,289,247 - 44,348,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,108,859 - 44,168,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,349,287 - 45,411,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,354,342 - 45,414,183 (-)NCBI
Celera1441,809,022 - 41,869,333 (-)NCBICelera
Cytogenetic Map14p11NCBI
UBE2K
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,698,136 - 39,782,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,698,109 - 39,782,792 (+)EnsemblGRCh38hg38GRCh38
GRCh37439,699,756 - 39,784,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,376,266 - 39,457,977 (+)NCBINCBI36Build 36hg18NCBI36
Build 34439,522,436 - 39,604,148NCBI
Celera440,137,995 - 40,223,124 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef439,024,547 - 39,109,580 (+)NCBIHuRef
CHM1_1439,699,339 - 39,784,070 (+)NCBICHM1_1
T2T-CHM13v2.0439,667,902 - 39,752,430 (+)NCBIT2T-CHM13v2.0
Ube2k
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,694,588 - 65,756,332 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,694,576 - 65,756,331 (+)EnsemblGRCm39 Ensembl
GRCm38565,537,245 - 65,598,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,537,233 - 65,598,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,928,500 - 65,990,228 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,816,406 - 65,878,063 (+)NCBIMGSCv36mm8
Celera562,815,933 - 62,878,205 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.72NCBI
Ube2k
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,618,379 - 7,656,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,618,379 - 7,655,542 (-)NCBIChiLan1.0ChiLan1.0
UBE2K
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,886,781 - 39,972,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1440,079,239 - 40,164,593 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0434,026,942 - 34,111,923 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,877,966 - 39,960,402 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,877,966 - 39,960,397 (+)Ensemblpanpan1.1panPan2
UBE2K
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,713,035 - 72,780,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,717,236 - 72,780,210 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,259,911 - 75,327,198 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,485,595 - 73,553,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,485,593 - 73,553,418 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,752,394 - 72,820,149 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,898,341 - 72,966,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,284,799 - 73,352,656 (-)NCBIUU_Cfam_GSD_1.0
Ube2k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528538,975,456 - 39,053,214 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,244,967 - 7,323,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,244,972 - 7,323,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2K
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,887,830 - 30,963,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,887,784 - 30,961,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,580,147 - 32,654,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2K
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,535,091 - 10,618,659 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2710,539,402 - 10,618,573 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604756,921,431 - 57,007,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2k
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476127,205,034 - 27,276,884 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476127,205,034 - 27,277,016 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ube2k
181 total Variants

Predicted Target Of
Summary Value
Count of predictions:1026
Count of miRNA genes:346
Interacting mature miRNAs:477
Transcripts:ENSRNOT00000030485
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat

1 to 10 of 17 rows
RH130202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21442,659,388 - 42,659,586 (+)MAPPERmRatBN7.2
Rnor_6.01444,290,620 - 44,290,817NCBIRnor6.0
Rnor_5.01444,110,232 - 44,110,429UniSTSRnor5.0
RGSC_v3.41445,350,660 - 45,350,857UniSTSRGSC3.4
Celera1441,810,395 - 41,810,592UniSTS
Cytogenetic Map14p11UniSTS
RH141776  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21442,663,184 - 42,663,375 (+)MAPPERmRatBN7.2
Rnor_6.01444,294,416 - 44,294,606NCBIRnor6.0
Rnor_5.01444,114,028 - 44,114,218UniSTSRnor5.0
RGSC_v3.41445,354,456 - 45,354,646UniSTSRGSC3.4
Celera1441,814,191 - 41,814,381UniSTS
Cytogenetic Map14p11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000030485   ⟹   ENSRNOP00000032265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,658,016 - 42,718,554 (-)Ensembl
Rnor_6.0 Ensembl1444,289,247 - 44,348,691 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099891   ⟹   ENSRNOP00000085062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,658,016 - 42,713,094 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103920   ⟹   ENSRNOP00000085882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,661,971 - 42,718,630 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105695   ⟹   ENSRNOP00000079243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,658,016 - 42,718,342 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116564   ⟹   ENSRNOP00000096375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,662,024 - 42,718,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118995   ⟹   ENSRNOP00000083068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,662,172 - 42,718,554 (-)Ensembl
RefSeq Acc Id: NM_001106006   ⟹   NP_001099476
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,011,681 - 43,072,214 (-)NCBI
mRatBN7.21442,658,016 - 42,718,554 (-)NCBI
Rnor_6.01444,289,247 - 44,348,691 (-)NCBI
Rnor_5.01444,108,859 - 44,168,755 (-)NCBI
RGSC_v3.41445,349,287 - 45,411,823 (-)RGD
Celera1441,809,022 - 41,869,333 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091716   ⟹   XP_038947644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,015,636 - 43,077,825 (-)NCBI
mRatBN7.21442,659,353 - 42,718,899 (-)NCBI
RefSeq Acc Id: XM_039091717   ⟹   XP_038947645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,015,636 - 43,072,270 (-)NCBI
mRatBN7.21442,659,353 - 42,718,548 (-)NCBI
RefSeq Acc Id: XM_063272925   ⟹   XP_063128995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,015,636 - 43,072,152 (-)NCBI
RefSeq Acc Id: XM_063272926   ⟹   XP_063128996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,015,636 - 43,071,961 (-)NCBI
RefSeq Acc Id: XM_063272927   ⟹   XP_063128997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,015,636 - 43,039,156 (-)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_001099476   ⟸   NM_001106006
- UniProtKB: A6JDD4 (UniProtKB/TrEMBL),   A0A8I6AV01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032265   ⟸   ENSRNOT00000030485
RefSeq Acc Id: XP_038947644   ⟸   XM_039091716
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2L8 (UniProtKB/TrEMBL),   A0A8I6AV01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947645   ⟸   XM_039091717
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMB3 (UniProtKB/TrEMBL),   A6JDD3 (UniProtKB/TrEMBL),   A0A8I6AV01 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079243   ⟸   ENSRNOT00000105695
UBA   UBC core

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXS8-F1-model_v2 AlphaFold D3ZXS8 1-200 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699311
Promoter ID:EPDNEW_R9836
Type:initiation region
Name:Ube2k_1
Description:ubiquitin-conjugating enzyme E2K
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01444,348,663 - 44,348,723EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-15749 BioCyc
BioCyc Pathway PWY-7511 [protein ubiquitination] BioCyc
BioCyc Pathway Image PWY-7511 BioCyc
Ensembl Genes ENSRNOG00000027088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030485.6 UniProtKB/TrEMBL
  ENSRNOT00000099891.1 UniProtKB/TrEMBL
  ENSRNOT00000103920.1 UniProtKB/TrEMBL
  ENSRNOT00000105695 ENTREZGENE
  ENSRNOT00000105695.1 UniProtKB/TrEMBL
  ENSRNOT00000116564.1 UniProtKB/TrEMBL
  ENSRNOT00000118995.1 UniProtKB/TrEMBL
  ENSRNOT00000170213 ENTREZGENE
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro Ub_conjugating_enzyme UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
  UBE2K_UBA UniProtKB/TrEMBL
  UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report rno:289623 UniProtKB/TrEMBL
NCBI Gene 289623 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  UQ_con UniProtKB/TrEMBL
PhenoGen Ube2k PhenoGen
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_1 UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027088 RatGTEx
SMART UBA UniProtKB/TrEMBL
  UBCc UniProtKB/TrEMBL
Superfamily-SCOP UBA_like UniProtKB/TrEMBL
  UBQ-conjugat/RWD-like UniProtKB/TrEMBL
UniProt A0A8I5ZMB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYF7_RAT UniProtKB/TrEMBL
  A0A8I6A2L8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A356_RAT UniProtKB/TrEMBL
1 to 40 of 45 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Ube2k  ubiquitin-conjugating enzyme E2K  Ube2k  ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Ube2k  ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)  Hip2  huntingtin interacting protein 2   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Hip2  huntingtin interacting protein 2   Hip2_predicted  huntingtin interacting protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Hip2_predicted  huntingtin interacting protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED