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Gene: Uspl1 (ubiquitin specific peptidase like 1) Rattus norvegicus

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Symbol:

Uspl1

Name:

ubiquitin specific peptidase like 1

RGD ID:

1310835

Description:

Predicted to enable SUMO binding activity and deSUMOylase activity. Predicted to be involved in several processes, including Cajal body organization; protein desumoylation; and snRNA transcription. Predicted to act upstream of or within blastocyst formation. Predicted to be active in Cajal body. Orthologous to human USPL1 (ubiquitin specific peptidase like 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC288447; LOC288447; RGD1310835; SUMO-specific isopeptidase USPL1; ubiquitin-specific peptidase-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	10,859,764 - 10,886,761 (-)	NCBI		GRCr8
mRatBN7.2	12	5,823,460 - 5,850,470 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	5,823,359 - 5,850,366 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	6,495,299 - 6,521,899 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	7,118,425 - 7,145,025 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	6,146,430 - 6,173,029 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	6,930,018 - 6,957,027 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	6,929,978 - 6,956,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	6,318,581 - 6,345,858 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	6,337,758 - 6,345,845 (-)	NCBI
Celera	12	7,581,451 - 7,608,343 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Uspl1	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USPL1 mRNA]	CTD	PMID:31150632
Uspl1	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of USPL1 mRNA	CTD	PMID:22206623
Uspl1	Rat	17beta-estradiol	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of USPL1 mRNA	CTD	PMID:30165855
Uspl1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Uspl1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of USPL1 mRNA	CTD	PMID:21570461
Uspl1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of USPL1 mRNA	CTD	PMID:33387578
Uspl1	Rat	2-hydroxypropanoic acid	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Lactic Acid results in increased expression of USPL1 mRNA	CTD	PMID:30851411
Uspl1	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of USPL1 mRNA	CTD	PMID:28628672
Uspl1	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Uspl1 (Mus musculus)	6480464	bisphenol S results in increased expression of USPL1 mRNA	CTD	PMID:39298647
Uspl1	Rat	acrylamide	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Acrylamide results in increased expression of USPL1 mRNA	CTD	PMID:32763439
Uspl1	Rat	aflatoxin B1	increases expression	ISO	Uspl1 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of USPL1 mRNA	CTD	PMID:19770486
Uspl1	Rat	aflatoxin B1	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of USPL1 mRNA	CTD	PMID:27153756
Uspl1	Rat	aristolochic acid A	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of USPL1 mRNA	CTD	PMID:33212167
Uspl1	Rat	Aroclor 1254	decreases expression	ISO	Uspl1 (Mus musculus)	6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of USPL1 mRNA	CTD	PMID:23650126
Uspl1	Rat	arsane	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	arsenic atom	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Uspl1 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of USPL1 mRNA	CTD	PMID:21318169
Uspl1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of USPL1 mRNA	CTD	PMID:25181051 and PMID:30816183
Uspl1	Rat	bisphenol A	increases expression	ISO	Uspl1 (Mus musculus)	6480464	bisphenol A results in increased expression of USPL1 mRNA	CTD	PMID:33221593
Uspl1	Rat	bisphenol A	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of USPL1 mRNA	CTD	PMID:28628672
Uspl1	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of USPL1 mRNA	CTD	PMID:19010381
Uspl1	Rat	cadmium dichloride	increases methylation	EXP		6480464	Cadmium Chloride results in increased methylation of USPL1 promoter	CTD	PMID:22457795
Uspl1	Rat	choline	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of USPL1 gene	CTD	PMID:20938992
Uspl1	Rat	copper atom	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of USPL1 mRNA	CTD	PMID:24690739
Uspl1	Rat	copper(0)	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of USPL1 mRNA	CTD	PMID:24690739
Uspl1	Rat	copper(II) sulfate	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of USPL1 mRNA	CTD	PMID:19549813
Uspl1	Rat	crocidolite asbestos	decreases expression	ISO	Uspl1 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of USPL1 mRNA	CTD	PMID:29279043
Uspl1	Rat	cyclosporin A	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Cyclosporine results in increased expression of USPL1 mRNA	CTD	PMID:20106945 and PMID:25562108
Uspl1	Rat	dexamethasone	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of USPL1 mRNA	CTD	PMID:28628672
Uspl1	Rat	dicrotophos	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	dicrotophos results in decreased expression of USPL1 mRNA	CTD	PMID:28302478
Uspl1	Rat	disulfiram	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of USPL1 mRNA	CTD	PMID:24690739
Uspl1	Rat	doxorubicin	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of USPL1 mRNA	CTD	PMID:29803840
Uspl1	Rat	elemental selenium	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Selenium results in decreased expression of USPL1 mRNA	CTD	PMID:19244175
Uspl1	Rat	elesclomol	increases expression	ISO	USPL1 (Homo sapiens)	6480464	elesclomol results in increased expression of USPL1 mRNA	CTD	PMID:18723479
Uspl1	Rat	elesclomol	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	Acetylcysteine inhibits the reaction [elesclomol results in increased expression of USPL1 mRNA]	CTD	PMID:18723479
Uspl1	Rat	ethanol	affects splicing	ISO	Uspl1 (Mus musculus)	6480464	Ethanol affects the splicing of USPL1 mRNA	CTD	PMID:30319688
Uspl1	Rat	fenofibrate	increases expression	ISO	Uspl1 (Mus musculus)	6480464	Fenofibrate results in increased expression of USPL1 mRNA	CTD	PMID:21318169
Uspl1	Rat	fenofibrate	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	PPARA protein affects the reaction [Fenofibrate results in increased expression of USPL1 mRNA]	CTD	PMID:21318169
Uspl1	Rat	folic acid	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	[1 more ...	CTD	PMID:20938992 and PMID:22206623
Uspl1	Rat	formaldehyde	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of USPL1 mRNA	CTD	PMID:20655997
Uspl1	Rat	formaldehyde	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Formaldehyde results in increased expression of USPL1 mRNA	CTD	PMID:23649840
Uspl1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of USPL1 mRNA	CTD	PMID:22061828
Uspl1	Rat	indometacin	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of USPL1 mRNA	CTD	PMID:28628672
Uspl1	Rat	L-methionine	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of USPL1 gene	CTD	PMID:20938992
Uspl1	Rat	lead diacetate	decreases expression	ISO	Uspl1 (Mus musculus)	6480464	lead acetate results in decreased expression of USPL1 mRNA	CTD	PMID:21829687
Uspl1	Rat	manganese atom	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	manganese(0)	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	manganese(II) chloride	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	mercury atom	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Mercury results in increased expression of USPL1 mRNA	CTD	PMID:16823088
Uspl1	Rat	mercury dichloride	increases expression	EXP		6480464	Mercuric Chloride results in increased expression of USPL1 mRNA	CTD	PMID:16507785
Uspl1	Rat	mercury(0)	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Mercury results in increased expression of USPL1 mRNA	CTD	PMID:16823088
Uspl1	Rat	methamphetamine	multiple interactions	EXP		6480464	[Methamphetamine co-treated with SCH 23390] results in increased expression of USPL1 mRNA	CTD	PMID:19564919
Uspl1	Rat	methamphetamine	increases expression	EXP		6480464	Methamphetamine results in increased expression of USPL1 mRNA	CTD	PMID:19564919
Uspl1	Rat	methyl methanesulfonate	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of USPL1 mRNA	CTD	PMID:23649840
Uspl1	Rat	methylisothiazolinone	increases expression	ISO	USPL1 (Homo sapiens)	6480464	2-methyl-4-isothiazolin-3-one results in increased expression of USPL1 mRNA	CTD	PMID:31629900
Uspl1	Rat	N-acetyl-L-cysteine	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	Acetylcysteine inhibits the reaction [elesclomol results in increased expression of USPL1 mRNA]	CTD	PMID:18723479
Uspl1	Rat	paracetamol	affects expression	ISO	Uspl1 (Mus musculus)	6480464	Acetaminophen affects the expression of USPL1 mRNA	CTD	PMID:17562736
Uspl1	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of USPL1 mRNA	CTD	PMID:33387578
Uspl1	Rat	paracetamol	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Acetaminophen results in increased expression of USPL1 mRNA	CTD	PMID:21420995
Uspl1	Rat	paraquat	affects splicing	ISO	Uspl1 (Mus musculus)	6480464	Paraquat affects the splicing of USPL1 exon	CTD	PMID:27111068
Uspl1	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of USPL1 mRNA	CTD	PMID:36331819
Uspl1	Rat	pirinixic acid	multiple interactions	ISO	Uspl1 (Mus musculus)	6480464	PPARA protein affects the reaction [pirinixic acid results in increased expression of USPL1 mRNA]	CTD	PMID:21318169
Uspl1	Rat	pirinixic acid	increases expression	ISO	Uspl1 (Mus musculus)	6480464	pirinixic acid results in increased expression of USPL1 mRNA	CTD	PMID:18301758 more ...
Uspl1	Rat	rac-lactic acid	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Lactic Acid results in increased expression of USPL1 mRNA	CTD	PMID:30851411
Uspl1	Rat	resveratrol	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of USPL1 mRNA	CTD	PMID:23557933
Uspl1	Rat	SCH 23390	increases expression	EXP		6480464	SCH 23390 results in increased expression of USPL1 mRNA	CTD	PMID:19564919
Uspl1	Rat	SCH 23390	multiple interactions	EXP		6480464	[Methamphetamine co-treated with SCH 23390] results in increased expression of USPL1 mRNA	CTD	PMID:19564919
Uspl1	Rat	selenium atom	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Selenium results in decreased expression of USPL1 mRNA	CTD	PMID:19244175
Uspl1	Rat	silver atom	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Silver results in increased expression of USPL1 mRNA	CTD	PMID:26014281
Uspl1	Rat	silver(0)	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Silver results in increased expression of USPL1 mRNA	CTD	PMID:26014281
Uspl1	Rat	sodium arsenite	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of USPL1 mRNA	CTD	PMID:39836092
Uspl1	Rat	sodium dichromate	increases expression	EXP		6480464	sodium bichromate results in increased expression of USPL1 mRNA	CTD	PMID:25993096
Uspl1	Rat	sunitinib	increases expression	ISO	USPL1 (Homo sapiens)	6480464	Sunitinib results in increased expression of USPL1 mRNA	CTD	PMID:31533062
Uspl1	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of USPL1 mRNA	CTD	PMID:31150632
Uspl1	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USPL1 mRNA]	CTD	PMID:31150632
Uspl1	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of USPL1 mRNA	CTD	PMID:23411599 and PMID:34492290
Uspl1	Rat	titanium dioxide	decreases methylation	ISO	Uspl1 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of USPL1 gene	CTD	PMID:35295148
Uspl1	Rat	triphenyl phosphate	affects expression	ISO	USPL1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of USPL1 mRNA	CTD	PMID:37042841
Uspl1	Rat	Triptolide	increases expression	ISO	Uspl1 (Mus musculus)	6480464	triptolide results in increased expression of USPL1 mRNA	CTD	PMID:32835833
Uspl1	Rat	triptonide	increases expression	ISO	Uspl1 (Mus musculus)	6480464	triptonide results in increased expression of USPL1 mRNA	CTD	PMID:33045310
Uspl1	Rat	trovafloxacin	increases expression	ISO	Uspl1 (Mus musculus)	6480464	trovafloxacin results in increased expression of USPL1 mRNA	CTD	PMID:35537566
Uspl1	Rat	valproic acid	affects expression	ISO	USPL1 (Homo sapiens)	6480464	Valproic Acid affects the expression of USPL1 mRNA	CTD	PMID:25979313
Uspl1	Rat	valproic acid	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of USPL1 mRNA	CTD	PMID:23179753 and PMID:27188386
Uspl1	Rat	vitamin E	decreases expression	ISO	USPL1 (Homo sapiens)	6480464	Vitamin E results in decreased expression of USPL1 mRNA	CTD	PMID:19244175
Uspl1	Rat	zinc atom	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of USPL1 mRNA	CTD	PMID:18593933
Uspl1	Rat	zinc(0)	multiple interactions	ISO	USPL1 (Homo sapiens)	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of USPL1 mRNA	CTD	PMID:18593933

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Uspl1	Rat	blastocyst formation	acts_upstream_of_or_within	ISO	Uspl1 (Mus musculus)	1624291	PMID:27869233	RGD	PMID:27869233
Uspl1	Rat	Cajal body organization	involved_in	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415
Uspl1	Rat	Cajal body organization	involved_in	IBA	PANTHER:PTN001033803 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Uspl1	Rat	Cajal body organization	involved_in	IEA	InterPro:IPR033505	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Uspl1	Rat	cell population proliferation	involved_in	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415
Uspl1	Rat	protein desumoylation	involved_in	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415
Uspl1	Rat	protein desumoylation	involved_in	IBA	PANTHER:PTN001033803 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Uspl1	Rat	snRNA transcription	involved_in	ISO	USPL1 (Homo sapiens)	1624291	PMID:24413172	RGD	PMID:24413172

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Uspl1	Rat	Cajal body	located_in	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415 and PMID:24413172	RGD	PMID:22878415 and PMID:24413172
Uspl1	Rat	Cajal body	is_active_in	IBA	PANTHER:PTN001033803 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Uspl1	Rat	deSUMOylase activity	enables	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415
Uspl1	Rat	protein binding	enables	ISO	USPL1 (Homo sapiens)	1624291	UniProtKB:P55199 more ...	RGD	PMID:21988832 more ...
Uspl1	Rat	SUMO binding	enables	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415
Uspl1	Rat	SUMO binding	enables	IBA	PANTHER:PTN001033803 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Uspl1	Rat	SUMO binding	enables	IEA	InterPro:IPR028890 and InterPro:IPR033505	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Uspl1	Rat	ubiquitin binding	NOT\|enables	ISO	USPL1 (Homo sapiens)	1624291	PMID:22878415	RGD	PMID:22878415

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:15632090	PMID:22664934	PMID:22878415	PMID:24413172	PMID:27869233

Uspl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	10,859,764 - 10,886,761 (-)	NCBI		GRCr8
mRatBN7.2	12	5,823,460 - 5,850,470 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	5,823,359 - 5,850,366 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	6,495,299 - 6,521,899 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	7,118,425 - 7,145,025 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	6,146,430 - 6,173,029 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	6,930,018 - 6,957,027 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	6,929,978 - 6,956,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	6,318,581 - 6,345,858 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	6,337,758 - 6,345,845 (-)	NCBI
Celera	12	7,581,451 - 7,608,343 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

USPL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	30,617,920 - 30,660,766 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	30,617,693 - 30,660,770 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	31,192,057 - 31,234,903 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	30,089,920 - 30,131,686 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	30,089,919 - 30,131,686	NCBI
Celera	13	12,260,821 - 12,302,674 (+)	NCBI		Celera
Cytogenetic Map	13	q12.3	NCBI
HuRef	13	12,009,328 - 12,051,666 (+)	NCBI		HuRef
CHM1_1	13	31,159,523 - 31,201,291 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	29,839,977 - 29,882,805 (+)	NCBI		T2T-CHM13v2.0

Uspl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	149,121,338 - 149,152,246 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	149,121,160 - 149,152,244 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	149,184,560 - 149,215,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	149,184,350 - 149,215,434 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	149,996,136 - 150,027,010 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	149,495,067 - 149,525,783 (+)	NCBI		MGSCv36	mm8
Celera	5	147,199,738 - 147,230,612 (+)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	89.18	NCBI

Uspl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	15,173,625 - 15,209,473 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	15,173,448 - 15,212,443 (-)	NCBI	ChiLan1.0	ChiLan1.0

USPL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	30,201,627 - 30,243,495 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	21,308,339 - 21,350,331 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	11,895,108 - 11,937,000 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	30,329,995 - 30,371,870 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	30,329,995 - 30,371,870 (+)	Ensembl	panpan1.1		panPan2

USPL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	9,397,575 - 9,430,058 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	9,397,763 - 9,427,431 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	9,442,413 - 9,475,896 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	9,509,054 - 9,542,555 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	9,509,061 - 9,542,397 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	9,403,303 - 9,436,787 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	9,411,676 - 9,444,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	9,453,709 - 9,487,196 (-)	NCBI		UU_Cfam_GSD_1.0

Uspl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	170,542,355 - 170,581,864 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	25,374,332 - 25,410,343 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	25,370,381 - 25,409,800 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USPL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	7,321,202 - 7,361,571 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	7,321,187 - 7,361,280 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	6,990,288 - 7,005,953 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USPL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	9,502,322 - 9,546,633 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	9,504,682 - 9,546,319 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	34,818,942 - 34,863,740 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uspl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	7,658,267 - 7,696,393 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	7,662,591 - 7,698,811 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Uspl1
97 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	518
Count of miRNA genes:	237
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000001210, ENSRNOT00000072129
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	9318387	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	3906969	10373166	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	797729	8525593	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat

D12Got7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	5,835,967 - 5,836,267 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	6,942,521 - 6,942,820	NCBI	Rnor6.0
Rnor_5.0	12	9,038,688 - 9,038,987	UniSTS	Rnor5.0
RGSC_v3.4	12	6,331,072 - 6,331,372	RGD	RGSC3.4
RGSC_v3.4	12	6,331,073 - 6,331,372	UniSTS	RGSC3.4
RGSC_v3.1	12	6,331,073 - 6,331,372	RGD
Celera	12	7,593,952 - 7,594,287	UniSTS
RH 3.4 Map	12	41.17	UniSTS
RH 3.4 Map	12	41.17	RGD
RH 2.0 Map	12	93.5	RGD
Cytogenetic Map	12	p11	UniSTS

UniSTS:235374

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	5,824,828 - 5,825,045 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	6,931,384 - 6,931,600	NCBI	Rnor6.0
Rnor_5.0	12	9,027,551 - 9,027,767	UniSTS	Rnor5.0
RGSC_v3.4	12	6,319,937 - 6,320,153	UniSTS	RGSC3.4
Celera	12	7,582,817 - 7,583,033	UniSTS
Cytogenetic Map	12	p11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001105906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001198555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CB712845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB787426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB798160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO396482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY309833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV774129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001210 ⟹ ENSRNOP00000001210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	5,823,467 - 5,849,974 (-)	Ensembl
Rnor_6.0 Ensembl	12	6,929,978 - 6,956,984 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072129 ⟹ ENSRNOP00000064429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	5,823,463 - 5,850,366 (-)	Ensembl
Rnor_6.0 Ensembl	12	6,930,018 - 6,956,914 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114472 ⟹ ENSRNOP00000090947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	5,823,359 - 5,849,974 (-)	Ensembl

RefSeq Acc Id:

NM_001105906 ⟹ NP_001099376

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,859,764 - 10,886,653 (-)	NCBI
mRatBN7.2	12	5,823,463 - 5,850,366 (-)	NCBI
Rnor_6.0	12	6,930,018 - 6,956,914 (-)	NCBI
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI
RGSC_v3.4	12	6,318,581 - 6,345,858 (-)	RGD
Celera	12	7,581,451 - 7,608,343 (-)	NCBI

Sequence:

show sequence

GAGACGGCTGTGGGGGAGGAGCCGTCCGAGGGAACGTGGGTTGAACGTTACGGGTAGATGGTGTGGATCTCAAGCTGGAACAGGAGTTCGGACTCATTGTATACAAAGAAGTGTGCTTCGGGCAGGGT
TCATTGAAAAATCCTTAGTGATTTTGACATGTTCCAAGTGACATAAATTAGCCAATGACTCGGAATGACGGATGACTCTCTGAAGATTGGAAATGGTTTGCCACTGGTTGGACCAGGGACTGATATAG
GGATATCTTCACTCCCCATGCTGGGGTACTTGGGAAAAAATTATGCTTCAGCTAAAGTTCCAGCAGACGGGTATTGCCCTACTTGTAGAGCGAAAGGAAAGCTAAACACCTTAAAAACTTACCGCATC
AGCTTCCAAGAATCTATCTTTTTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGGCTCTGAGTCACTTACTAACTTAATTTCTCCTGATTCGGAAGATTGTCACACTCCAAATAAGCCTCAGAAAAG
AAAGAGATTGGAAGACAACTGTAAGAATTCATCTCTTCCAGTACATTCTAAAAAGACTAGAGGTCACCTTGTCACTGACAGTGACCAGATTGTGAACGGTGAGTGTAATGGAGAAGTGTGTGGTGACT
TCTCAGCCAGCTTCCCAGGTGACAGTGCTCACCAGGATCCCGCCAGGACAGCTGCTTCTGTGGGGCAGAATGGGACTTTGGAAGCCAATGATAACGTGGTCATGGCTACTACAGAAGATCCTGCTGCA
GTTGGTGTCACACCGGAGCTGGAAATGCCGTCTGAGAGCAGATGTTTATCACTTTGCCAGCCTCTCTGTGTCCAGTGGAGAAACACTCAGGCGCTGTGCTGGTTAGACTGTATCCTCTCGGCCCTGGT
GCACCTGGAGGTGTTGAGGGACGCCGTGCTGGAGGTGTGCTCCAGAGAGGAGTGTGTGTTTGGGAAGCTGTTCGAAACCTACCACCAAGCAGATAAGCTTCTGTACACCCATCACCTGCATGGCGTCA
CAGGTGAAGATTGTAAAAAAATGACGACAGAAATATTTACAGAGATAGATACCTCTTTGAATAAAATTAGAGATGAAATTTTTGCTAAACTTCAGCCTAAGCTTAGATGCACACTAGGTGACATGGAA
AGTCCTGTGTTTGCACTTCCTGTACTGTTAAAGCTTGAACCCCATGTTGAAAACCTCTTTACATATTCTTTTTCTTGGAATTTTGAATGTTCCCATTGTGGGCACCAGTACCAAAACAGGTGTGTGAA
GAGTCTGGTCACCTTTACAAATGTTGTTCCTGAGTGGCATCCACTCAATGCTGCCCATTTCGGTCCGTGTAACAGTTGCAACAGTAAATCACAAATCAGAAAAATGGTGTTGGAAAGAGCGTCGCCCA
TAATCATGCTGCACTTCGTGGAAGGTTTGCCCAGGAAGGACCTGCAACACTATGCCTTCCACTTTGAAGGCAGTCTTTACCAAGTCACCTCCGTCATACAGTACCGGGCAAAGAACCATTTTATAACG
TGGACTGTAGATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTGAAGGGTCCGTGTGCTAAAAGGCATGAGGCCTGTGAAGTGCCAGCATCAGAGACACATATCGTTATTTGGGAAAGAAAATCCCA
GGTGCCAGTTGAAGGAGCTGCCTGCCTTCCACACATGAAGCTGCACGTGCAGTCCGTGTCAGGAATTGAAGTCCATGGCAACTGAGGACTCTCAGACACAGTTGCTGCCACTGAAAACTGACAGGTTA
AACCCTGGACAACCACCAGGTAAAACTCAGGCATCTAATTTGAGAAAAAGAGAAAATGCAGCGTCTTCTAAACCGGTAGCAGCCAGGTCAGCACAGAATCAGCCTCGGAAGGATGAGCAGAAGAAGGC
CTTCGTGGGAAGTTGGGTGAAAGGGCTGCTGAGCAGGGGCGGTGCGTTTATGCCACCCTGTGTTTCAGCTCAGAGTAGAGCAGTAACTGACCTGCAGCCCTCCGTGAAAGGAGCCAATAATTTTGATG
GCTTTAAAACGAAAAGTATAAACCGCAGGTCTAAAAGGATGTCCAGGAAAGCTAAGCATGTGGAGGAGGCATCTCCAGGTAGCAGCCCTCCACTGTCGGGTAGCACGGCTGCTCTGCCGCAGGCCGCT
GGGAATGCCTCCTCAGCCCAGTTGAAGGAGCAGGAAGGCTCACGTTCAGCTCCCCTCAGCCACAGACCTCCCAGTGATGAAAGCGCCATGTCTCCAGCAGGCCGTGCAGAGGCAGCTGAAGATCAGGT
TCATAAGCTTCGGCTCAGACTTCTTAAAAAGCTAAAGGCAAAAAAGAAGAAACTAGCGGCCCTCATGTCTTCCCCACGCCGTGAACCGTCTGTAAGCGACCATTCAGAGCCTGCGTCCCACTGTGGGT
CTCCGAATGACTGTGACGCAGTAGAAGATCTGCTCAGAGAGCTACAGTACCAGATTGACCTTGCAGACAACAAGTCTGGGTGCACCTCTGCTCCCGACGGCACCTCATGCAACAGCCAGAGTCATGAG
GAGATTTTAGCAGAGCTGTTGTCGCCTACAGCCCTGTCAGAGCCCTCAGAAAGTGGAGAGCCTGAGTTGAGGTACTTGGAAATGGGGGACAACAGCACCCCAACACCAGCACCTAGCGAATTCAGTGC
TGTTTCCCAGAACACATGTCTGAACCAGGAGCATAATTACTGCAGCCCTGAGAAAAGCCAGTGTGAGGTTGATCTGCATTCAGTCATCGACAGTGCCTGTGTAAGAGCCTTGAACTTGGGGAGTCCCA
TGAAGACTGACATTTTTGATGATTTTTTTCCTACTTCAGCATTGAATTCGTTAACAAATGACACATTGGACATACCTCATTTCGATGACTCTCTGTTTGAGAATTGCTGAGTGCATGCTAGTGTCGTC
GTTTAGTCCTGACCGCTGCTGCTAGGAGGCTGAGCTGTGGGTAGTGCTGGCTGAAGTGCACAGCCTTGTGCTCCAGCCATGGGGAAACTGTGAACTACTGGGGTCTTCCTCTGGTTCTGCCTGTGAGA
CATGAGATCTCTGCAAATTAAAGTCCTCAGACAAGTTTCTGTC

hide sequence

RefSeq Acc Id:

NM_001198555 ⟹ NP_001185484

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,859,764 - 10,886,653 (-)	NCBI
mRatBN7.2	12	5,823,463 - 5,850,366 (-)	NCBI
Rnor_6.0	12	6,930,018 - 6,956,914 (-)	NCBI
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI
Celera	12	7,581,451 - 7,608,343 (-)	NCBI

Sequence:

show sequence

GAGACGGCTGTGGGGGAGGAGCCGTCCGAGGGAACGTGGGTTGAACGTTACGGGTAGATGGTGT
GGATCTCAAGCTGGAACAGGAGTTCGGACTCATTGTATACAAAGAAGTGTGCTTCGGGCAGGGTTCATTGAAAAATCCTTAGTGATTTTGACATGTTCCAAGTGACATAAATTAGCCAATGACTCGGA
ATGACGGATGACTCTCTGAAGATTGGAAATGGTTTGCCACTGGTTGGACCAGGGACTGATATAGGGATATCTTCACTCCCCATGCTGGGGTACTTGGGAAAAAATTATGCTTCAGCTAAAGTTCCAGC
AGACGGGTATTGCCCTACTTGTAGAGCGAAAGGAAAGCTAAACACCTTAAAAACTTACCGCATCAGCTTCCAAGAATCTATCTTTTTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGGCTCTGAGT
CACTTACTAACTTAATTTCTCCTGATTCGGAAGATTGTCACACTCCAAATAAGCCTCAGAAAAGAAAGAGATTGGAAGACAACTGTAAGAATTCATCTCTTCCAGTACATTCTAAAAAGACTAGAGGT
CACCTTGTCACTGACAGTGACCAGATTGTGAACGGTGAGTGTAATGGAGAAGTGTGTGGTGACTTCTCAGCCAGCTTCCCAGGTGACAGTGCTCACCAGGATCCCGCCAGGACAGCTGCTTCTGTGGG
GCAGAATGGGACTTTGGAAGCCAATGATAACGTGGTCATGGCTACTACAGAAGATCCTGCTGCAGTTGGTGTCACACCGGAGCTGGAAATGCCGTCTGAGAGCAGATGTTTATCACTTTGCCAGCCTC
TCTGTGTCCAGTGGAGAAACACTCAGGCGCTGTGCTGGTTAGACTGTATCCTCTCGGCCCTGGTGCACCTGGAGGTGTTGAGGGACGCCGTGCTGGAGGTGTGCTCCAGAGAGGAGTGTGTGTTTGGG
AAGCTGTTCGAAACCTACCACCAAGCAGATAAGCTTCTGTACACCCATCACCTGCATGGCGTCACAGGTGAAGATTGTAAAAAAATGACGACAGAAATATTTACAGAGATAGATACCTCTTTGAATAA
AATTAGAGATGAAATTTTTGCTAAACTTCAGCCTAAGCTTAGATGCACACTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTGTACTGTTAAAGCTTGAACCCCATGTTGAAAACCTCTTTACAT
ATTCTTTTTCTTGGAATTTTGAATGTTCCCATTGTGGGCACCAGTACCAAAACAGGTGTGTGAAGAGTCTGGTCACCTTTACAAATGTTGTTCCTGAGTGGCATCCACTCAATGCTGCCCATTTCGGT
CCGTGTAACAGTTGCAACAGTAAATCACAAATCAGAAAAATGGTGTTGGAAAGAGCGTCGCCCATAATCATGCTGCACTTCGTGGAAGGTTTGCCCAGGAAGGACCTGCAACACTATGCCTTCCACTT
TGAAGGCAGTCTTTACCAAGTCACCTCCGTCATACAGTACCGGGCAAAGAACCATTTTATAACGTGGACTGTAGATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTGAAGGGTCCGTGTGCTAAAA
GGCATGAGGCCTGTGAAGTGCCAGCATCAGAGACACATATCGTTATTTGGGAAAGAAAATCCCAGGTGCCAGTTGAAGGAGCTGCCTGCCTTCCACACATGAAGCTGCACGTGCAGTCCGTGTCAGGT
GAGGAGCAGCCGAGTTCTCTGGCTGGGACCGCCACCTCAGAACCCTCAGTCGCCCATCCTACACCTATGGCAGTTGCTCCTCAGATTCTTCCAGCAACCCAAGCTGTAGCTCATGGAGATAGTGTCCT
TTCAGGAACAGGAGGCTTGCTGGACAGCGTTTCACCCTCTGCACTTGAAGAGACTATCCAGGAAACTGCCTCTGTTTCTCAGATTGACTCCAAAGATTGCCTCTTAGAAGACAAACCTGTGGTAGGAA
GTGCAGGACCTGTGAGAACACTGACTTTTCAGCCGCAGGACTCCCTGGGGTCTTCCTTGGTGTTGAACCTGTGTGAAGGAATGCTAGTTGCCCCTTGTGTGGATTCCAGGTTCCCATCCCAAGCTGTG
AGCACAGGTCTGCAGGCAGTACCGTCTCAGGCAGGGGACACAGTGGTTCCTAAACCTGTGACTGATGCCCCTGTTCCTGTTCTTGTTCAGGAATTGAAGTCCATGGCAACTGAGGACTCTCAGACACA
GTTGCTGCCACTGAAAACTGACAGGTTAAACCCTGGACAACCACCAGGTAAAACTCAGGCATCTAATTTGAGAAAAAGAGAAAATGCAGCGTCTTCTAAACCGGTAGCAGCCAGGTCAGCACAGAATC
AGCCTCGGAAGGATGAGCAGAAGAAGGCCTTCGTGGGAAGTTGGGTGAAAGGGCTGCTGAGCAGGGGCGGTGCGTTTATGCCACCCTGTGTTTCAGCTCAGAGTAGAGCAGTAACTGACCTGCAGCCC
TCCGTGAAAGGAGCCAATAATTTTGATGGCTTTAAAACGAAAAGTATAAACCGCAGGTCTAAAAGGATGTCCAGGAAAGCTAAGCATGTGGAGGAGGCATCTCCAGGTAGCAGCCCTCCACTGTCGGG
TAGCACGGCTGCTCTGCCGCAGGCCGCTGGGAATGCCTCCTCAGCCCAGTTGAAGGAGCAGGAAGGCTCACGTTCAGCTCCCCTCAGCCACAGACCTCCCAGTGATGAAAGCGCCATGTCTCCAGCAG
GCCGTGCAGAGGCAGCTGAAGATCAGGTTCATAAGCTTCGGCTCAGACTTCTTAAAAAGCTAAAGGCAAAAAAGAAGAAACTAGCGGCCCTCATGTCTTCCCCACGCCGTGAACCGTCTGTAAGCGAC
CATTCAGAGCCTGCGTCCCACTGTGGGTCTCCGAATGACTGTGACGCAGTAGAAGATCTGCTCAGAGAGCTACAGTACCAGATTGACCTTGCAGACAACAAGTCTGGGTGCACCTCTGCTCCCGACGG
CACCTCATGCAACAGCCAGAGTCATGAGGAGATTTTAGCAGAGCTGTTGTCGCCTACAGCCCTGTCAGAGCCCTCAGAAAGTGGAGAGCCTGAGTTGAGGTACTTGGAAATGGGGGACAACAGCACCC
CAACACCAGCACCTAGCGAATTCAGTGCTGTTTCCCAGAACACATGTCTGAACCAGGAGCATAATTACTGCAGCCCTGAGAAAAGCCAGTGTGAGGTTGATCTGCATTCAGTCATCGACAGTGCCTGT
GTAAGAGCCTTGAACTTGGGGAGTCCCATGAAGACTGACATTTTTGATGATTTTTTTCCTACTTCAGCATTGAATTCGTTAACAAATGACACATTGGACATACCTCATTTCGATGACTCTCTGTTTGA
GAATTGCTGAGTGCATGCTAGTGTCGTCGTTTAGTCCTGACCGCTGCTGCTAGGAGGCTGAGCTGTGGGTAGTGCTGGCTGAAGTGCACAGCCTTGTGCTCCAGCCATGGGGAAACTGTGAACTACTG
GGGTCTTCCTCTGGTTCTGCCTGTGAGACATGAGATCTCTGCAAATTAAAGTCCTCAGACAAGTTTCTGTC

hide sequence

RefSeq Acc Id:

XM_006248810 ⟹ XP_006248872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,859,768 - 10,886,760 (-)	NCBI
mRatBN7.2	12	5,823,460 - 5,850,470 (-)	NCBI
Rnor_6.0	12	6,930,022 - 6,957,027 (-)	NCBI
Rnor_5.0	12	9,026,185 - 9,053,011 (-)	NCBI

Sequence:

show sequence

CTTCCCCTTCCCCTGCCCTGCCCGCGTGCTTTCAAGCAGGGCTCTCTGCAGGAAAGTGTTTGTAGGGTAGTTCTTTGGCGGCGGACTCCCAAGCGGAAGTTGCTTTCCTTGCTGAGACGGCTGTGGGG
GAGGAGCCGTCCGAGGGAACGTGGGTTGAACGTTACGGGTAGATGGTGTGGATCTCAAGCTGGAACAGGAGTTCGGACTCATTGTATACAAAGAAGTGTGCTTCGGGCAGAATTATGCTTCAGCTAAA
GTTCCAGCAGACGGGTATTGCCCTACTTGTAGAGCGAAAGGAAAGCTAAACACCTTAAAAACTTACCGCATCAGCTTCCAAGAATCTATCTTTTTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGG
CTCTGAGTCACTTACTAACTTAATTTCTCCTGATTCGGAAGATTGTCACACTCCAAATAAGCCTCAGAAAAGAAAGAGATTGGAAGACAACTGTAAGAATTCATCTCTTCCAGTACATTCTAAAAAGA
CTAGAGGTCACCTTGTCACTGACAGTGACCAGATTGTGAACGGTGAGTGTAATGGAGAAGTGTGTGGTGACTTCTCAGCCAGCTTCCCAGGTGACAGTGCTCACCAGGATCCCGCCAGGACAGCTGCT
TCTGTGGGGCAGAATGGGACTTTGGAAGCCAATGATAACGTGGTCATGGCTACTACAGAAGATCCTGCTGCAGTTGGTGTCACACCGGAGCTGGAAATGCCGTCTGAGAGCAGATGTTTATCACTTTG
CCAGCCTCTCTGTGTCCAGTGGAGAAACACTCAGGCGCTGTGCTGGTTAGACTGTATCCTCTCGGCCCTGGTGCACCTGGAGGTGTTGAGGGACGCCGTGCTGGAGGTGTGCTCCAGAGAGGAGTGTG
TGTTTGGGAAGCTGTTCGAAACCTACCACCAAGCAGATAAGCTTCTGTACACCCATCACCTGCATGGCGTCACAGGTGAAGATTGTAAAAAAATGACGACAGAAATATTTACAGAGATAGATACCTCT
TTGAATAAAATTAGAGATGAAATTTTTGCTAAACTTCAGCCTAAGCTTAGATGCACACTAGGTGACATGGAAAGTCCTGTGTTTGCACTTCCTGTACTGTTAAAGCTTGAACCCCATGTTGAAAACCT
CTTTACATATTCTTTTTCTTGGAATTTTGAATGTTCCCATTGTGGGCACCAGTACCAAAACAGGTGTGTGAAGAGTCTGGTCACCTTTACAAATGTTGTTCCTGAGTGGCATCCACTCAATGCTGCCC
ATTTCGGTCCGTGTAACAGTTGCAACAGTAAATCACAAATCAGAAAAATGGTGTTGGAAAGAGCGTCGCCCATAATCATGCTGCACTTCGTGGAAGGTTTGCCCAGGAAGGACCTGCAACACTATGCC
TTCCACTTTGAAGGCAGTCTTTACCAAGTCACCTCCGTCATACAGTACCGGGCAAAGAACCATTTTATAACGTGGACTGTAGATGCTGATGGGAGTTGGCTGGAGTGTGATGACCTGAAGGGTCCGTG
TGCTAAAAGGCATGAGGCCTGTGAAGTGCCAGCATCAGAGACACATATCGTTATTTGGGAAAGAAAATCCCAGGTGCCAGTTGAAGGAGCTGCCTGCCTTCCACACATGAAGCTGCACGTGCAGTCCG
TGTCAGGTGAGGAGCAGCCGAGTTCTCTGGCTGGGACCGCCACCTCAGAACCCTCAGTCGCCCATCCTACACCTATGGCAGTTGCTCCTCAGATTCTTCCAGCAACCCAAGCTGTAGCTCATGGAGAT
AGTGTCCTTTCAGGAACAGGAGGCTTGCTGGACAGCGTTTCACCCTCTGCACTTGAAGAGACTATCCAGGAAACTGCCTCTGTTTCTCAGATTGACTCCAAAGATTGCCTCTTAGAAGACAAACCTGT
GGTAGGAAGTGCAGGACCTGTGAGAACACTGACTTTTCAGCCGCAGGACTCCCTGGGGTCTTCCTTGGTGTTGAACCTGTGTGAAGGAATGCTAGTTGCCCCTTGTGTGGATTCCAGGTTCCCATCCC
AAGCTGTGAGCACAGGTCTGCAGGCAGTACCGTCTCAGGCAGGGGACACAGTGGTTCCTAAACCTGTGACTGATGCCCCTGTTCCTGTTCTTGTTCAGGAATTGAAGTCCATGGCAACTGAGGACTCT
CAGACACAGTTGCTGCCACTGAAAACTGACAGGTTAAACCCTGGACAACCACCAGGTAAAACTCAGGCATCTAATTTGAGAAAAAGAGAAAATGCAGCGTCTTCTAAACCGGTAGCAGCCAGGTCAGC
ACAGAATCAGCCTCGGAAGGATGAGCAGAAGAAGGCCTTCGTGGGAAGTTGGGTGAAAGGGCTGCTGAGCAGGGGCGGTGCGTTTATGCCACCCTGTGTTTCAGCTCAGAGTAGAGCAGTAACTGACC
TGCAGCCCTCCGTGAAAGGAGCCAATAATTTTGATGGCTTTAAAACGAAAAGTATAAACCGCAGGTCTAAAAGGATGTCCAGGAAAGCTAAGCATGTGGAGGAGGCATCTCCAGGTAGCAGCCCTCCA
CTGTCGGGTAGCACGGCTGCTCTGCCGCAGGCCGCTGGGAATGCCTCCTCAGCCCAGTTGAAGGAGCAGGAAGGCTCACGTTCAGCTCCCCTCAGCCACAGACCTCCCAGTGATGAAAGCGCCATGTC
TCCAGCAGGCCGTGCAGAGGCAGCTGAAGATCAGGTTCATAAGCTTCGGCTCAGACTTCTTAAAAAGCTAAAGGCAAAAAAGAAGAAACTAGCGGCCCTCATGTCTTCCCCACGCCGTGAACCGTCTG
TAAGCGACCATTCAGAGCCTGCGTCCCACTGTGGGTCTCCGAATGACTGTGACGCAGTAGAAGATCTGCTCAGAGAGCTACAGTACCAGATTGACCTTGCAGACAACAAGTCTGGGTGCACCTCTGCT
CCCGACGGCACCTCATGCAACAGCCAGAGTCATGAGGAGATTTTAGCAGAGCTGTTGTCGCCTACAGCCCTGTCAGAGCCCTCAGAAAGTGGAGAGCCTGAGTTGAGGTACTTGGAAATGGGGGACAA
CAGCACCCCAACACCAGCACCTAGCGAATTCAGTGCTGTTTCCCAGAACACATGTCTGAACCAGGAGCATAATTACTGCAGCCCTGAGAAAAGCCAGTGTGAGGTTGATCTGCATTCAGTCATCGACA
GTGCCTGTGTAAGAGCCTTGAACTTGGGGAGTCCCATGAAGACTGACATTTTTGATGATTTTTTTCCTACTTCAGCATTGAATTCGTTAACAAATGACACATTGGACATACCTCATTTCGATGACTCT
CTGTTTGAGAATTGCTGAGTGCATGCTAGTGTCGTCGTTTAGTCCTGACCGCTGCTGCTAGGAGGCTGAGCTGTGGGTAGTGCTGGCTGAAGTGCACAGCCTTGTGCTCCAGCCATGGGGAAACTGTG
AACTACTGGGGTCTTCCTCTGGTTCTGCCTGTGAGACATGAGATCTCTGCAAATTAAAGTCCTCAGACAAGTTTC

hide sequence

RefSeq Acc Id:

XM_063271116 ⟹ XP_063127186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	10,859,768 - 10,886,761 (-)	NCBI


Protein RefSeqs	NP_001099376	(Get FASTA)	NCBI Sequence Viewer
	NP_001185484	(Get FASTA)	NCBI Sequence Viewer
	XP_006248872	(Get FASTA)	NCBI Sequence Viewer
	XP_063127186	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89528	(Get FASTA)	NCBI Sequence Viewer
	EDL89529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001210
	ENSRNOP00000001210.5
	ENSRNOP00000064429
	ENSRNOP00000064429.1
	ENSRNOP00000090947
	ENSRNOP00000090947.1
	ENSRNOP00000103801

RefSeq Acc Id:	NP_001099376 ⟸ NM_001105906
- Peptide Label:	isoform 2
- UniProtKB:	D3ZTS4 (UniProtKB/TrEMBL), A6K171 (UniProtKB/TrEMBL), A0A8I6AFA0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDDSLKIGNGLPLVGPGTDIGISSLPMLGYLGKNYASAKVPADGYCPTCRAKGKLNTLKTYRISFQESIFLCEDLQCIYPLGSESLTNLISPDSEDCHTPNKPQKRKRLEDNCKNSSLPVHSKKTRG HLVTDSDQIVNGECNGEVCGDFSASFPGDSAHQDPARTAASVGQNGTLEANDNVVMATTEDPAAVGVTPELEMPSESRCLSLCQPLCVQWRNTQALCWLDCILSALVHLEVLRDAVLEVCSREECVFG KLFETYHQADKLLYTHHLHGVTGEDCKKMTTEIFTEIDTSLNKIRDEIFAKLQPKLRCTLGDMESPVFALPVLLKLEPHVENLFTYSFSWNFECSHCGHQYQNRCVKSLVTFTNVVPEWHPLNAAHFG PCNSCNSKSQIRKMVLERASPIIMLHFVEGLPRKDLQHYAFHFEGSLYQVTSVIQYRAKNHFITWTVDADGSWLECDDLKGPCAKRHEACEVPASETHIVIWERKSQVPVEGAACLPHMKLHVQSVSG IEVHGN hide sequence

RefSeq Acc Id:	NP_001185484 ⟸ NM_001198555
- Peptide Label:	isoform 1
- UniProtKB:	M0R4X8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDDSLKIGNGLPLVGPGTDIGISSLPMLGYLGKNYASAKVPADGYCPTCRAKGKLNTLKTYRI SFQESIFLCEDLQCIYPLGSESLTNLISPDSEDCHTPNKPQKRKRLEDNCKNSSLPVHSKKTRGHLVTDSDQIVNGECNGEVCGDFSASFPGDSAHQDPARTAASVGQNGTLEANDNVVMATTEDPAA VGVTPELEMPSESRCLSLCQPLCVQWRNTQALCWLDCILSALVHLEVLRDAVLEVCSREECVFGKLFETYHQADKLLYTHHLHGVTGEDCKKMTTEIFTEIDTSLNKIRDEIFAKLQPKLRCTLGDME SPVFALPVLLKLEPHVENLFTYSFSWNFECSHCGHQYQNRCVKSLVTFTNVVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPIIMLHFVEGLPRKDLQHYAFHFEGSLYQVTSVIQYRAKNHFIT WTVDADGSWLECDDLKGPCAKRHEACEVPASETHIVIWERKSQVPVEGAACLPHMKLHVQSVSGEEQPSSLAGTATSEPSVAHPTPMAVAPQILPATQAVAHGDSVLSGTGGLLDSVSPSALEETIQE TASVSQIDSKDCLLEDKPVVGSAGPVRTLTFQPQDSLGSSLVLNLCEGMLVAPCVDSRFPSQAVSTGLQAVPSQAGDTVVPKPVTDAPVPVLVQELKSMATEDSQTQLLPLKTDRLNPGQPPGKTQAS NLRKRENAASSKPVAARSAQNQPRKDEQKKAFVGSWVKGLLSRGGAFMPPCVSAQSRAVTDLQPSVKGANNFDGFKTKSINRRSKRMSRKAKHVEEASPGSSPPLSGSTAALPQAAGNASSAQLKEQE GSRSAPLSHRPPSDESAMSPAGRAEAAEDQVHKLRLRLLKKLKAKKKKLAALMSSPRREPSVSDHSEPASHCGSPNDCDAVEDLLRELQYQIDLADNKSGCTSAPDGTSCNSQSHEEILAELLSPTAL SEPSESGEPELRYLEMGDNSTPTPAPSEFSAVSQNTCLNQEHNYCSPEKSQCEVDLHSVIDSACVRALNLGSPMKTDIFDDFFPTSALNSLTNDTLDIPHFDDSLFENC hide sequence

RefSeq Acc Id:

XP_006248872 ⟸ XM_006248810

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATTEDPAAVGVTPELEMPSESRCLSLCQPLCVQWRNTQALCWLDCILSALVHLEVLRDAVLEVCSREECVFGKLFETYHQADKLLYTHHLHGVTGEDCKKMTTEIFTEIDTSLNKIRDEIFAKLQPK
LRCTLGDMESPVFALPVLLKLEPHVENLFTYSFSWNFECSHCGHQYQNRCVKSLVTFTNVVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPIIMLHFVEGLPRKDLQHYAFHFEGSLYQVTSVIQ
YRAKNHFITWTVDADGSWLECDDLKGPCAKRHEACEVPASETHIVIWERKSQVPVEGAACLPHMKLHVQSVSGEEQPSSLAGTATSEPSVAHPTPMAVAPQILPATQAVAHGDSVLSGTGGLLDSVSP
SALEETIQETASVSQIDSKDCLLEDKPVVGSAGPVRTLTFQPQDSLGSSLVLNLCEGMLVAPCVDSRFPSQAVSTGLQAVPSQAGDTVVPKPVTDAPVPVLVQELKSMATEDSQTQLLPLKTDRLNPG
QPPGKTQASNLRKRENAASSKPVAARSAQNQPRKDEQKKAFVGSWVKGLLSRGGAFMPPCVSAQSRAVTDLQPSVKGANNFDGFKTKSINRRSKRMSRKAKHVEEASPGSSPPLSGSTAALPQAAGNA
SSAQLKEQEGSRSAPLSHRPPSDESAMSPAGRAEAAEDQVHKLRLRLLKKLKAKKKKLAALMSSPRREPSVSDHSEPASHCGSPNDCDAVEDLLRELQYQIDLADNKSGCTSAPDGTSCNSQSHEEIL
AELLSPTALSEPSESGEPELRYLEMGDNSTPTPAPSEFSAVSQNTCLNQEHNYCSPEKSQCEVDLHSVIDSACVRALNLGSPMKTDIFDDFFPTSALNSLTNDTLDIPHFDDSLFENC

hide sequence

Ensembl Acc Id:

ENSRNOP00000001210 ⟸ ENSRNOT00000001210

Ensembl Acc Id:

ENSRNOP00000064429 ⟸ ENSRNOT00000072129

Protein Domains

USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R4X8-F1-model_v2	AlphaFold	M0R4X8	1-1069	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698392

Promoter ID:

EPDNEW_R8916

Type:

initiation region

Name:

Uspl1_1

Description:

ubiquitin specific peptidase like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	6,956,926 - 6,956,986	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-20177	BioCyc
Ensembl Genes	ENSRNOG00000000909	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001210	ENTREZGENE
	ENSRNOT00000001210.8	UniProtKB/TrEMBL
	ENSRNOT00000072129	ENTREZGENE
	ENSRNOT00000072129.3	UniProtKB/TrEMBL
	ENSRNOT00000114472	ENTREZGENE
	ENSRNOT00000114472.1	UniProtKB/TrEMBL
	ENSRNOT00000145682	ENTREZGENE
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	DUF4650	UniProtKB/TrEMBL
	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C98	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	USPL1	UniProtKB/TrEMBL
KEGG Report	rno:288447	UniProtKB/TrEMBL
NCBI Gene	288447	ENTREZGENE
PANTHER	PTHR15294	UniProtKB/TrEMBL
	SUMO-SPECIFIC ISOPEPTIDASE USPL1	UniProtKB/TrEMBL
Pfam	DUF4650	UniProtKB/TrEMBL
	Peptidase_C98	UniProtKB/TrEMBL
PhenoGen	Uspl1	PhenoGen
PROSITE	UCH_2_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000909	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8I6AFA0	ENTREZGENE, UniProtKB/TrEMBL
	A6K171	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTS4	ENTREZGENE, UniProtKB/TrEMBL
	M0R4X8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Uspl1	ubiquitin specific peptidase like 1	RGD1310835_predicted	hypothetical LOC288447 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310835_predicted	hypothetical LOC288447 (predicted)	LOC288447_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288447_predicted	hypothetical LOC288447 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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