Tfr2 (transferrin receptor 2) - Rat Genome Database

Name: Tfr2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tfr2 (transferrin receptor 2) Rattus norvegicus

Analyze

Symbol:

Tfr2

Name:

transferrin receptor 2

RGD ID:

1310152

Description:

Predicted to enable co-receptor binding activity and transferrin receptor activity. Involved in acute-phase response. Predicted to be located in cytoplasmic vesicle and plasma membrane. Predicted to be part of HFE-transferrin receptor complex. Predicted to be active in external side of plasma membrane and postsynapse. Used to study hemochromatosis type 3. Human ortholog(s) of this gene implicated in hemochromatosis and hemochromatosis type 3. Orthologous to human TFR2 (transferrin receptor 2); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC288562; transferrin receptor protein 2; Trfr2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TFR2 (transferrin receptor 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tfr2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tfr2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TFR2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TFR2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tfr2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TFR2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TFR2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tfr2 (transferrin receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TFR2 (transferrin receptor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tfr2 (transferrin receptor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tfr2 (transferrin receptor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TRE1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	VPS70	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TRE2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	24,744,450 - 24,761,413 (-)	NCBI		GRCr8
mRatBN7.2	12	19,107,673 - 19,124,622 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	19,107,673 - 19,124,591 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	20,263,117 - 20,280,127 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	20,875,998 - 20,893,008 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	19,940,332 - 19,957,342 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	22,177,382 - 22,194,330 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,177,382 - 22,194,299 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	19,638,502 - 19,655,420 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	19,628,960 - 19,644,982 (+)	NCBI
Celera	12	20,912,852 - 20,929,749 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

beta thalassemia (ISO)

genetic disease (ISO)

hemochromatosis (ISO)

hemochromatosis type 1 (ISO)

hemochromatosis type 3 (IAGP,ISO,ISS)

hemochromatosis type 5 (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

17beta-estradiol (EXP,ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGS 15943 (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

desferrioxamine B (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ferric ammonium citrate (ISO)

flutamide (EXP)

fumonisin B1 (ISO)

furan (EXP)

glafenine (EXP)

glycidol (EXP)

iron atom (EXP,ISO)

iron dextran (ISO)

iron(0) (EXP,ISO)

kenpaullone (ISO)

leflunomide (EXP)

methapyrilene (EXP,ISO)

mono(2-ethylhexyl) phthalate (ISO)

monosodium L-glutamate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

nickel dichloride (ISO)

nickel sulfate (ISO)

nitrofen (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sotorasib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

tolcapone (EXP)

topotecan (EXP)

trametinib (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acute-phase response (IEP)

cellular response to iron ion (ISO)

endocytic iron import into cell (IBA,IEA,ISO)

intracellular iron ion homeostasis (ISO)

multicellular organismal-level iron ion homeostasis (ISO)

positive regulation of endocytosis (ISO)

positive regulation of peptide hormone secretion (ISO)

positive regulation of protein maturation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

receptor-mediated endocytosis (ISO)

response to iron ion (ISO)

transferrin transport (IEA,ISO)

Cellular Component

cytoplasmic vesicle (ISO)

external side of plasma membrane (IBA,IEA,ISO)

HFE-transferrin receptor complex (ISO)

plasma membrane (ISO)

Molecular Function

co-receptor binding (ISO)

protein binding (ISO)

transferrin receptor activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	A novel rat model of hereditary hemochromatosis due to a mutation in transferrin receptor 2.	Bartnikas TB, etal., Comp Med. 2013 Apr;63(2):143-55.
2.	The gene TFR2 is mutated in a new type of haemochromatosis mapping to 7q22.	Camaschella C, etal., Nat Genet. 2000 May;25(1):14-5.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Comparison of changes in gene expression of transferrin receptor-1 and other iron-regulatory proteins in rat liver and brain during acute-phase response.	Malik IA, etal., Cell Tissue Res. 2011 May;344(2):299-312. doi: 10.1007/s00441-011-1152-3. Epub 2011 Mar 26.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Elevated levels of transferrin receptor 2 mRNA, not transferrin receptor 1 mRNA, are associated with increased survival in acute myeloid leukaemia.	Nakamaki T, etal., Br J Haematol. 2004 Apr;125(1):42-9.
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation
12.	mRNA expression of iron regulatory genes in beta-thalassemia intermedia and beta-thalassemia major mouse models.	Weizer-Stern O, etal., Am J Hematol. 2006 Jul;81(7):479-83.

Additional References at PubMed

PMID:12477932	PMID:12704209	PMID:16893896	PMID:16932966	PMID:18353247	PMID:19250966	PMID:21173098	PMID:22728873	PMID:22960056	PMID:25635054	PMID:31707638	PMID:32521439

Genomics

Comparative Map Data

Tfr2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	24,744,450 - 24,761,413 (-)	NCBI		GRCr8
mRatBN7.2	12	19,107,673 - 19,124,622 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	19,107,673 - 19,124,591 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	20,263,117 - 20,280,127 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	20,875,998 - 20,893,008 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	19,940,332 - 19,957,342 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	22,177,382 - 22,194,330 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,177,382 - 22,194,299 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	19,638,502 - 19,655,420 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	19,628,960 - 19,644,982 (+)	NCBI
Celera	12	20,912,852 - 20,929,749 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

TFR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,620,420 - 100,641,552 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,620,416 - 100,642,779 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	100,218,043 - 100,239,175 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	100,055,975 - 100,077,109 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	99,862,690 - 99,883,810	NCBI
Celera	7	94,947,821 - 94,968,950 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	94,849,520 - 94,870,648 (-)	NCBI		HuRef
CHM1_1	7	100,148,586 - 100,169,685 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	101,860,501 - 101,881,634 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	99,577,671 - 99,598,799 (-)	NCBI

Tfr2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	137,568,127 - 137,586,344 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	137,568,102 - 137,585,743 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	137,569,822 - 137,588,081 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	137,569,840 - 137,587,481 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	138,011,079 - 138,028,709 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	137,800,593 - 137,817,260 (+)	NCBI		MGSCv36	mm8
Celera	5	134,553,519 - 134,571,033 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	76.57	NCBI

Tfr2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955573	272,289 - 291,668 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955573	272,315 - 289,227 (+)	NCBI	ChiLan1.0	ChiLan1.0

TFR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	118,531,714 - 118,554,217 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	166,796,330 - 166,818,842 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,647,431 - 92,669,889 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	106,048,497 - 106,060,481 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	106,048,935 - 106,069,238 (-)	Ensembl	panpan1.1		panPan2

TFR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,059,501 - 9,076,646 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,060,629 - 9,076,158 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	10,763,917 - 10,781,061 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	8,993,681 - 9,010,842 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	8,993,652 - 9,010,354 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	8,846,198 - 8,863,361 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	8,823,694 - 8,841,037 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	9,006,114 - 9,023,274 (+)	NCBI		UU_Cfam_GSD_1.0

Tfr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,353,500 - 133,368,393 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	668,157 - 682,174 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	667,570 - 681,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TFR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	8,539,320 - 8,578,763 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	8,539,316 - 8,553,993 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	7,934,261 - 7,948,960 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TFR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	12,570,604 - 12,592,269 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	12,571,841 - 12,592,266 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,712,690 - 3,733,677 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tfr2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	16,452,504 - 16,466,781 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	16,451,520 - 16,469,393 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tfr2
105 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	55
Interacting mature miRNAs:	62
Transcripts:	ENSRNOT00000001905
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13008296	19212979	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		6	41	41	4	41			2
Low		8	8		7		2	2	72	30	34	8	2
Below cutoff	3	25	8		8		6	9		5	7	3	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001905 ⟹ ENSRNOP00000001905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	19,107,673 - 19,124,591 (-)	Ensembl
Rnor_6.0 Ensembl	12	22,177,382 - 22,194,299 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082895 ⟹ ENSRNOP00000072585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	19,107,673 - 19,124,591 (-)	Ensembl
Rnor_6.0 Ensembl	12	22,177,402 - 22,194,287 (-)	Ensembl

RefSeq Acc Id:

NM_001105916 ⟹ NP_001099386

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,450 - 24,761,368 (-)	NCBI
mRatBN7.2	12	19,107,673 - 19,124,591 (-)	NCBI
Rnor_6.0	12	22,177,382 - 22,194,299 (-)	NCBI
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI
RGSC_v3.4	12	19,638,502 - 19,655,420 (+)	RGD
Celera	12	20,912,852 - 20,929,749 (-)	RGD

Sequence:

show sequence

AAATCCAGAGACCTGTTGCTGAGTTGAACTTGGCTGCTGTGTCTTCCCACTCAGGACTCGGCTT
TGACAGGCACGAGGCAGGGACTGGGGTGAGCCCCTACCTCTCAGATCTTTCTGGACCTGGCTGC
GGGTCCTGGGATCTTCAGCGCGGCTTGGATTTCAAACTGGAGGGGTTCAGGAGGGGGCACAAGC
ATGGAACAACGTTGGGGTCTACTTCGGAAAGTGCAACAGTGGTCCCCAAGACCCTCTCAGACCA
TCTACAGACGTGTGGAAGGCCCTCAACTGGAGAACCTAGAGGAGGAAGATAGGGAGGAAGGGGA
GGAGCTTCCTGCCCAGTTCTGCCCCATGGAACTCAAAGGCCCTGAGCGCTTAGGCTCCTGTCCT
GGGAGGTCCATTCCCATACCCTGGGCTGCAGCAGGTCGAAAGGCTGCTCCCTATCTGGTCCTGA
CCACCCTGCTAATCTTCACTGGGGCCTTCCTCCTGGGCTACGTGGCCTTTCGAGGGTCCTGCCA
GGCATGTGGGGACTCTGTGTTGGTGGTTGGTGAAGATGTCAACTCTGAGGACTCCAGCCGGGGC
ACGTTGTACTGGAGTGACCTCCAGGACATGTTTCTCCGGTTCCTTGGGGAGGGACGCATGGAGG
ACACCATCAGGCTGACCAGCCTCCGGGAACGCGTGGCCGGCTCAGCCAGAATGGCCACCCTGGT
CCAAGACATCCTCGATAAGCTCTCGCGCCAGAAGCTGGACCACGTGTGGACTGACACGCACTAT
GTGGGACTTCAGTTCCCGGACCCGGCTCACCCTAACACCCTGCACTGGGTGGGTGCAGACGGGA
GCGTCCAAGAGCAGCTACCGCTGGAGGATCCGGAAGTCTACTGTCCCTACAGCGCCACGGGCAA
CGCCACGGGCAAGCTTGTGTACGCCCACTACGGGCGGCGGGAGGACCTGCAGGACCTGAAAGCC
AAGGACGTGGAGCTGGCCGGCAGCCTCCTGCTAGTGCGTGCTGGGATTACAAGCTTCGCCCAGA
AGGTAGCCATTGCCCAGGACTTTGGGGCCCACGGAGTGCTGATATACCCTGACCCAGCGGACTT
CTCCCAAGACCCCCACAAGCCAGGCCTGTCTAGTGACAGGGCTGTGTATGGACATGTGCACCTG
GGAACTGGGGACCCTTACACGCCTGGCTTCCCGTCCTTCAATCAAACCCAGTTCCCTCCAGTAG
AATCATCGGGGCTTCCCAACATCCCTGCCCAGCCCATCAGTGCCGACGTTGCTGATCGCTTGCT
CAGGAAACTCACAGGTCCCGTGGCTCCTCAGGAATGGAAGGGTCGCCTCTCAGACTCTCCGTAT
CGCCTGGGACCTGGGCCAGGCTTACGCCTTGTGGTCAACAACCACAGAACCTCTACTCCCATCA
GTAACATCTTTGCGTGCATCGAGGGCTTCGCAGAGCCAGATCACTATGTCGTTATCGGGGCCCA
GAGGGATGCCTGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCATCCTCCTGGAGCTG
GTTCGGACCTTTTCCTCCATGGTCAGCAGTGGCTTTAGACCTCGAAGAAGTCTTTTGTTCATCA
GCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACGGAGTGGTTGGAGGGCTACCTCAGCGT
GCTACACCTCAAAGCTGTCGTGTATGTGAGCCTGGACAACTCCGTGTTGGGAGACGGCAAATTC
CATGCTAAGACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCCTGAAGCAGGTGGATTCCC
CTAACCACAGTGGACAGACACTCTACGATCAAGTGGCATTCACCCACCCAAGCTGGGATGCTGA
AGTGATCCAGCCCCTGCCCATGGACAGCAGCGCATATTCCTTCACAGCTTTTGCGGGCGTCCCA
GCTGTGGAGTTCTCCTTCATGGAGGACGATAGGGTGTACCCATTCCTGCACACGAAGGAGGACA
CGTATGAGAATCTGCACAAGATGCTGCGAGGTCGCCTGCCCGCCGTGGTCCTAGCAGTGGCTCA
GCTCGCTGGTCAGCTCCTCATCCGACTGAGCCACGATCACCTACTGCCGCTGGACTTCGGCCGC
TACGGAGACGTGGTCCTCAGGCACATCGGCAACCTTAATGAGTTCTCTGGGGACCTCAAGGCGC
GCGGGCTGACCCTGCAGTGGGTGTACTCTGCAAGGGGGGACTATATCCGGGCGGCGGAGAAGCT
GCGGAAGGAGATTTACAGCTCGGAGCAGAGCGATGAGCGTCTGATGCGCATGTACAACGTGCGC
ATCATGAGGGTGGAGTTCTACTTCCTGTCCCAGTACGTGTCGCCGGCCGACTCCCCATTCCGCC
ACATTTTCCTAGGCCAAGGCGACCACACTTTGGGTGCCCTGGTGGAACACCTACGGATGCTGCG
CTCCGATGGCTCAGGAGCTGCCTCTTCTGGGTTGAGCCCAGGTCTGGGCTTCCAGGAGAGTCGC
TTCCGGCGACAGCTGGCGCTGCTCACGTGGACGCTACAGGGGGCAGCCAACGCACTCAGTGGCG
ACGTTTGGAACATCGACAATAACTTTTGAGGCCAGAAGTCCTCCATGGGCCCCACGTGATTCTC
CTTTCTCCCTATTTGAGTGGTGCAGGCAACGGAGGTGCCTGAGAGCAACCTATCCTCATTAACA
ACCTTGGTCCTGCAACGCCAGTGAGACATATTTTCTCAGTGTGACTGTTATACCACTGTTTATC
CAGAAAGCGGTTTTCTTCCCATCACTGGCCTCTCTGCCTTCAGGAGCATAGTTCCCCATATCTA
GAAACCATCTAGACACTGGGATCCAGCTCTCTTAGCGGGTGAGATGGATAGCGTCATTTTCTTA
TGACACACAAGTGGTATGTGGGTGGCCCAAGGGGGATTAGATGTCAATAAACCATTTACCTGGT
AACCTCTGTTGTCCATAAGC

hide sequence

RefSeq Acc Id:

XM_006249116 ⟹ XP_006249178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,468 - 24,761,413 (-)	NCBI
mRatBN7.2	12	19,107,691 - 19,124,622 (-)	NCBI
Rnor_6.0	12	22,177,400 - 22,194,330 (-)	NCBI
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI

Sequence:

show sequence

GGCTTTGAGTCTTCTGGGAGCATGGTCCAAGAAATCCAGAGACCTGTTGCTGAGTTGAACTTGG
CTGCTGTGTCTTCCCACTCAGGACTCGGCTTTGACAGGCACGAGGCAGGGACTGGGGGTTCAGG
AGGGGGCACAAGCATGGAACAACGTTGGGGTCTACTTCGGAAAGTGCAACAGTGGTCCCCAAGA
CCCTCTCAGACCATCTACAGACGTGTGGAAGGCCCTCAACTGGAGAACCTAGAGGAGGAAGATA
GGGAGGAAGGGGAGGAGCTTCCTGCCCAGTTCTGCCCCATGGAACTCAAAGGCCCTGAGCGCTT
AGGCTCCTGTCCTGGGAGGTCCATTCCCATACCCTGGGCTGCAGCAGGTCGAAAGGCTGCTCCC
TATCTGGTCCTGACCACCCTGCTAATCTTCACTGGGGCCTTCCTCCTGGGCTACGTGGCCTTTC
GAGGGTCCTGCCAGGCATGTGGGGACTCTGTGTTGGTGGTTGGTGAAGATGTCAACTCTGAGGA
CTCCAGCCGGGGCACGTTGTACTGGAGTGACCTCCAGGACATGTTTCTCCGGTTCCTTGGGGAG
GGACGCATGGAGGACACCATCAGGCTGACCAGCCTCCGGGAACGCGTGGCCGGCTCAGCCAGAA
TGGCCACCCTGGTCCAAGACATCCTCGATAAGCTCTCGCGCCAGAAGCTGGACCACGTGTGGAC
TGACACGCACTATGTGGGACTTCAGTTCCCGGACCCGGCTCACCCTAACACCCTGCACTGGGTG
GGTGCAGACGGGAGCGTCCAAGAGCAGCTACCGCTGGAGGATCCGGAAGTCTACTGTCCCTACA
GCGCCACGGGCAACGCCACGGGCAAGCTTGTGTACGCCCACTACGGGCGGCGGGAGGACCTGCA
GGACCTGAAAGCCAAGGACGTGGAGCTGGCCGGCAGCCTCCTGCTAGTGCGTGCTGGGATTACA
AGCTTCGCCCAGAAGGTAGCCATTGCCCAGGACTTTGGGGCCCACGGAGTGCTGATATACCCTG
ACCCAGCGGACTTCTCCCAAGACCCCCACAAGCCAGGCCTGTCTAGTGACAGGGCTGTGTATGG
ACATGTGCACCTGGGAACTGGGGACCCTTACACGCCTGGCTTCCCGTCCTTCAATCAAACCCAG
TTCCCTCCAGTAGAATCATCGGGGCTTCCCAACATCCCTGCCCAGCCCATCAGTGCCGACGTTG
CTGATCGCTTGCTCAGGAAACTCACAGGTCCCGTGGCTCCTCAGGAATGGAAGGGTCGCCTCTC
AGACTCTCCGTATCGCCTGGGACCTGGGCCAGGCTTACGCCTTGTGGTCAACAACCACAGAACC
TCTACTCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTCGCAGAGCCAGATCACTATGTCG
TTATCGGGGCCCAGAGGGATGCCTGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCAT
CCTCCTGGAGCTGGTTCGGACCTTTTCCTCCATGGTCAGCAGTGGCTTTAGACCTCGAAGAAGT
CTTTTGTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACGGAGTGGTTGGAGG
GCTACCTCAGCGTGCTACACCTCAAAGCTGTCGTGTATGTGAGCCTGGACAACTCCGTGTTGGG
AGACGGCAAATTCCATGCTAAGACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCCTGAAG
CAGGTGGATTCCCCTAACCACAGTGGACAGACACTCTACGATCAAGTGGCATTCACCCACCCAA
GCTGGGATGCTGAAGTGATCCAGCCCCTGCCCATGGACAGCAGCGCATATTCCTTCACAGCTTT
TGCGGGCGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGACGATAGGGTGTACCCATTCCTGCAC
ACGAAGGAGGACACGTATGAGAATCTGCACAAGATGCTGCGAGGTCGCCTGCCCGCCGTGGTCC
TAGCAGTGGCTCAGCTCGCTGGTCAGCTCCTCATCCGACTGAGCCACGATCACCTACTGCCGCT
GGACTTCGGCCGCTACGGAGACGTGGTCCTCAGGCACATCGGCAACCTTAATGAGTTCTCTGGG
GACCTCAAGGCGCGCGGGCTGACCCTGCAGTGGGTGTACTCTGCAAGGGGGGACTATATCCGGG
CGGCGGAGAAGCTGCGGAAGGAGATTTACAGCTCGGAGCAGAGCGATGAGCGTCTGATGCGCAT
GTACAACGTGCGCATCATGAGGGTGGAGTTCTACTTCCTGTCCCAGTACGTGTCGCCGGCCGAC
TCCCCATTCCGCCACATTTTCCTAGGCCAAGGCGACCACACTTTGGGTGCCCTGGTGGAACACC
TACGGATGCTGCGCTCCGATGGCTCAGGAGCTGCCTCTTCTGGGTTGAGCCCAGGTCTGGGCTT
CCAGGAGAGTCGCTTCCGGCGACAGCTGGCGCTGCTCACGTGGACGCTACAGGGGGCAGCCAAC
GCACTCAGTGGCGACGTTTGGAACATCGACAATAACTTTTGAGGCCAGAAGTCCTCCATGGGCC
CCACGTGATTCTCCTTTCTCCCTATTTGAGTGGTGCAGGCAACGGAGGTGCCTGAGAGCAACCT
ATCCTCATTAACAACCTTGGTCCTGCAACGCCAGTGAGACATATTTTCTCAGTGTGACTGTTAT
ACCACTGTTTATCCAGAAAGCGGTTTTCTTCCCATCACTGGCCTCTCTGCCTTCAGGAGCATAG
TTCCCCATATCTAGAAACCATCTAGACACTGGGATCCAGCTCTCTTAGCGGGTGAGATGGATAG
CGTCATTTTCTTATGACACACAAGTGGTATGTGGGTGGCCCAAGGGGGATTAGATGTCAATAAA
CCATTTACCTGGTAA

hide sequence

RefSeq Acc Id:

XM_006249117 ⟹ XP_006249179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,468 - 24,761,375 (-)	NCBI
mRatBN7.2	12	19,107,691 - 19,124,589 (-)	NCBI
Rnor_6.0	12	22,177,400 - 22,194,300 (-)	NCBI
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI

Sequence:

show sequence

GAAATCCAGAGACCTGTTGCTGAGTTGAACTTGGCTGCTGTGTCTTCCCACTCAGGACTCGGCT
TTGACAGGCACGAGGCAGGGACTGGGCTGCGGGTCCTGGGATCTTCAGCGCGGCTTGGATTTCA
AACTGGAGGGGTTCAGGAGGGGGCACAAGCATGGAACAACGTTGGGGTCTACTTCGGAAAGTGC
AACAGTGGTCCCCAAGACCCTCTCAGACCATCTACAGACGTGTGGAAGGCCCTCAACTGGAGAA
CCTAGAGGAGGAAGATAGGGAGGAAGGGGAGGAGCTTCCTGCCCAGTTCTGCCCCATGGAACTC
AAAGGCCCTGAGCGCTTAGGCTCCTGTCCTGGGAGGTCCATTCCCATACCCTGGGCTGCAGCAG
GTCGAAAGGCTGCTCCCTATCTGGTCCTGACCACCCTGCTAATCTTCACTGGGGCCTTCCTCCT
GGGCTACGTGGCCTTTCGAGGGTCCTGCCAGGCATGTGGGGACTCTGTGTTGGTGGTTGGTGAA
GATGTCAACTCTGAGGACTCCAGCCGGGGCACGTTGTACTGGAGTGACCTCCAGGACATGTTTC
TCCGGTTCCTTGGGGAGGGACGCATGGAGGACACCATCAGGCTGACCAGCCTCCGGGAACGCGT
GGCCGGCTCAGCCAGAATGGCCACCCTGGTCCAAGACATCCTCGATAAGCTCTCGCGCCAGAAG
CTGGACCACGTGTGGACTGACACGCACTATGTGGGACTTCAGTTCCCGGACCCGGCTCACCCTA
ACACCCTGCACTGGGTGGGTGCAGACGGGAGCGTCCAAGAGCAGCTACCGCTGGAGGATCCGGA
AGTCTACTGTCCCTACAGCGCCACGGGCAACGCCACGGGCAAGCTTGTGTACGCCCACTACGGG
CGGCGGGAGGACCTGCAGGACCTGAAAGCCAAGGACGTGGAGCTGGCCGGCAGCCTCCTGCTAG
TGCGTGCTGGGATTACAAGCTTCGCCCAGAAGGTAGCCATTGCCCAGGACTTTGGGGCCCACGG
AGTGCTGATATACCCTGACCCAGCGGACTTCTCCCAAGACCCCCACAAGCCAGGCCTGTCTAGT
GACAGGGCTGTGTATGGACATGTGCACCTGGGAACTGGGGACCCTTACACGCCTGGCTTCCCGT
CCTTCAATCAAACCCAGTTCCCTCCAGTAGAATCATCGGGGCTTCCCAACATCCCTGCCCAGCC
CATCAGTGCCGACGTTGCTGATCGCTTGCTCAGGAAACTCACAGGTCCCGTGGCTCCTCAGGAA
TGGAAGGGTCGCCTCTCAGACTCTCCGTATCGCCTGGGACCTGGGCCAGGCTTACGCCTTGTGG
TCAACAACCACAGAACCTCTACTCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTCGCAGA
GCCAGATCACTATGTCGTTATCGGGGCCCAGAGGGATGCCTGGGGCCCAGGAGCAGCCAAGTCT
GCAGTGGGGACTGCCATCCTCCTGGAGCTGGTTCGGACCTTTTCCTCCATGGTCAGCAGTGGCT
TTAGACCTCGAAGAAGTCTTTTGTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGC
CACGGAGTGGTTGGAGGGCTACCTCAGCGTGCTACACCTCAAAGCTGTCGTGTATGTGAGCCTG
GACAACTCCGTGTTGGGAGACGGCAAATTCCATGCTAAGACCAGCCCCCTTCTCGTCAGCCTCA
TTGAGAATATCCTGAAGCAGGTGGATTCCCCTAACCACAGTGGACAGACACTCTACGATCAAGT
GGCATTCACCCACCCAAGCTGGGATGCTGAAGTGATCCAGCCCCTGCCCATGGACAGCAGCGCA
TATTCCTTCACAGCTTTTGCGGGCGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGACGATAGGG
TGTACCCATTCCTGCACACGAAGGAGGACACGTATGAGAATCTGCACAAGATGCTGCGAGGTCG
CCTGCCCGCCGTGGTCCTAGCAGTGGCTCAGCTCGCTGGTCAGCTCCTCATCCGACTGAGCCAC
GATCACCTACTGCCGCTGGACTTCGGCCGCTACGGAGACGTGGTCCTCAGGCACATCGGCAACC
TTAATGAGTTCTCTGGGGACCTCAAGGCGCGCGGGCTGACCCTGCAGTGGGTGTACTCTGCAAG
GGGGGACTATATCCGGGCGGCGGAGAAGCTGCGGAAGGAGATTTACAGCTCGGAGCAGAGCGAT
GAGCGTCTGATGCGCATGTACAACGTGCGCATCATGAGGGTGGAGTTCTACTTCCTGTCCCAGT
ACGTGTCGCCGGCCGACTCCCCATTCCGCCACATTTTCCTAGGCCAAGGCGACCACACTTTGGG
TGCCCTGGTGGAACACCTACGGATGCTGCGCTCCGATGGCTCAGGAGCTGCCTCTTCTGGGTTG
AGCCCAGGTCTGGGCTTCCAGGAGAGTCGCTTCCGGCGACAGCTGGCGCTGCTCACGTGGACGC
TACAGGGGGCAGCCAACGCACTCAGTGGCGACGTTTGGAACATCGACAATAACTTTTGAGGCCA
GAAGTCCTCCATGGGCCCCACGTGATTCTCCTTTCTCCCTATTTGAGTGGTGCAGGCAACGGAG
GTGCCTGAGAGCAACCTATCCTCATTAACAACCTTGGTCCTGCAACGCCAGTGAGACATATTTT
CTCAGTGTGACTGTTATACCACTGTTTATCCAGAAAGCGGTTTTCTTCCCATCACTGGCCTCTC
TGCCTTCAGGAGCATAGTTCCCCATATCTAGAAACCATCTAGACACTGGGATCCAGCTCTCTTA
GCGGGTGAGATGGATAGCGTCATTTTCTTATGACACACAAGTGGTATGTGGGTGGCCCAAGGGG
GATTAGATGTCAATAAACCATTTACCTGGTAA

hide sequence

RefSeq Acc Id:

XM_006249118 ⟹ XP_006249180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,468 - 24,761,359 (-)	NCBI
mRatBN7.2	12	19,107,691 - 19,124,616 (-)	NCBI
Rnor_6.0	12	22,177,400 - 22,194,324 (-)	NCBI
Rnor_5.0	12	24,194,288 - 24,211,237 (-)	NCBI

Sequence:

show sequence

GAGTCTTCTGGGAGCATGGTCCAAGAAATCCAGAGACCTGTTGCTGAGTTGAACTTGGCTGCTG
TGTCTTCCCACTCAGGACTCGGCTTTGACAGCTGCGGGTCCTGGGATCTTCAGCGCGGCTTGGA
TTTCAAACTGGAGGGGTTCAGGAGGGGGCACAAGCATGGAACAACGTTGGGGTCTACTTCGGAA
AGTGCAACAGTGGTCCCCAAGACCCTCTCAGACCATCTACAGACGTGTGGAAGGCCCTCAACTG
GAGAACCTAGAGGAGGAAGATAGGGAGGAAGGGGAGGAGCTTCCTGCCCAGTTCTGCCCCATGG
AACTCAAAGGCCCTGAGCGCTTAGGCTCCTGTCCTGGGAGGTCCATTCCCATACCCTGGGCTGC
AGCAGGTCGAAAGGCTGCTCCCTATCTGGTCCTGACCACCCTGCTAATCTTCACTGGGGCCTTC
CTCCTGGGCTACGTGGCCTTTCGAGGGTCCTGCCAGGCATGTGGGGACTCTGTGTTGGTGGTTG
GTGAAGATGTCAACTCTGAGGACTCCAGCCGGGGCACGTTGTACTGGAGTGACCTCCAGGACAT
GTTTCTCCGGTTCCTTGGGGAGGGACGCATGGAGGACACCATCAGGCTGACCAGCCTCCGGGAA
CGCGTGGCCGGCTCAGCCAGAATGGCCACCCTGGTCCAAGACATCCTCGATAAGCTCTCGCGCC
AGAAGCTGGACCACGTGTGGACTGACACGCACTATGTGGGACTTCAGTTCCCGGACCCGGCTCA
CCCTAACACCCTGCACTGGGTGGGTGCAGACGGGAGCGTCCAAGAGCAGCTACCGCTGGAGGAT
CCGGAAGTCTACTGTCCCTACAGCGCCACGGGCAACGCCACGGGCAAGCTTGTGTACGCCCACT
ACGGGCGGCGGGAGGACCTGCAGGACCTGAAAGCCAAGGACGTGGAGCTGGCCGGCAGCCTCCT
GCTAGTGCGTGCTGGGATTACAAGCTTCGCCCAGAAGGTAGCCATTGCCCAGGACTTTGGGGCC
CACGGAGTGCTGATATACCCTGACCCAGCGGACTTCTCCCAAGACCCCCACAAGCCAGGCCTGT
CTAGTGACAGGGCTGTGTATGGACATGTGCACCTGGGAACTGGGGACCCTTACACGCCTGGCTT
CCCGTCCTTCAATCAAACCCAGTTCCCTCCAGTAGAATCATCGGGGCTTCCCAACATCCCTGCC
CAGCCCATCAGTGCCGACGTTGCTGATCGCTTGCTCAGGAAACTCACAGGTCCCGTGGCTCCTC
AGGAATGGAAGGGTCGCCTCTCAGACTCTCCGTATCGCCTGGGACCTGGGCCAGGCTTACGCCT
TGTGGTCAACAACCACAGAACCTCTACTCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTC
GCAGAGCCAGATCACTATGTCGTTATCGGGGCCCAGAGGGATGCCTGGGGCCCAGGAGCAGCCA
AGTCTGCAGTGGGGACTGCCATCCTCCTGGAGCTGGTTCGGACCTTTTCCTCCATGGTCAGCAG
TGGCTTTAGACCTCGAAGAAGTCTTTTGTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTG
GGAGCCACGGAGTGGTTGGAGGGCTACCTCAGCGTGCTACACCTCAAAGCTGTCGTGTATGTGA
GCCTGGACAACTCCGTGTTGGGAGACGGCAAATTCCATGCTAAGACCAGCCCCCTTCTCGTCAG
CCTCATTGAGAATATCCTGAAGCAGGTGGATTCCCCTAACCACAGTGGACAGACACTCTACGAT
CAAGTGGCATTCACCCACCCAAGCTGGGATGCTGAAGTGATCCAGCCCCTGCCCATGGACAGCA
GCGCATATTCCTTCACAGCTTTTGCGGGCGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGACGA
TAGGGTGTACCCATTCCTGCACACGAAGGAGGACACGTATGAGAATCTGCACAAGATGCTGCGA
GGTCGCCTGCCCGCCGTGGTCCTAGCAGTGGCTCAGCTCGCTGGTCAGCTCCTCATCCGACTGA
GCCACGATCACCTACTGCCGCTGGACTTCGGCCGCTACGGAGACGTGGTCCTCAGGCACATCGG
CAACCTTAATGAGTTCTCTGGGGACCTCAAGGCGCGCGGGCTGACCCTGCAGTGGGTGTACTCT
GCAAGGGGGGACTATATCCGGGCGGCGGAGAAGCTGCGGAAGGAGATTTACAGCTCGGAGCAGA
GCGATGAGCGTCTGATGCGCATGTACAACGTGCGCATCATGAGGGTGGAGTTCTACTTCCTGTC
CCAGTACGTGTCGCCGGCCGACTCCCCATTCCGCCACATTTTCCTAGGCCAAGGCGACCACACT
TTGGGTGCCCTGGTGGAACACCTACGGATGCTGCGCTCCGATGGCTCAGGAGCTGCCTCTTCTG
GGTTGAGCCCAGGTCTGGGCTTCCAGGAGAGTCGCTTCCGGCGACAGCTGGCGCTGCTCACGTG
GACGCTACAGGGGGCAGCCAACGCACTCAGTGGCGACGTTTGGAACATCGACAATAACTTTTGA
GGCCAGAAGTCCTCCATGGGCCCCACGTGATTCTCCTTTCTCCCTATTTGAGTGGTGCAGGCAA
CGGAGGTGCCTGAGAGCAACCTATCCTCATTAACAACCTTGGTCCTGCAACGCCAGTGAGACAT
ATTTTCTCAGTGTGACTGTTATACCACTGTTTATCCAGAAAGCGGTTTTCTTCCCATCACTGGC
CTCTCTGCCTTCAGGAGCATAGTTCCCCATATCTAGAAACCATCTAGACACTGGGATCCAGCTC
TCTTAGCGGGTGAGATGGATAGCGTCATTTTCTTATGACACACAAGTGGTATGTGGGTGGCCCA
AGGGGGATTAGATGTCAATAAACCATTTACCTGGTAA

hide sequence

RefSeq Acc Id:

XM_008769125 ⟹ XP_008767347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,468 - 24,761,379 (-)	NCBI
mRatBN7.2	12	19,107,691 - 19,124,605 (-)	NCBI
Rnor_6.0	12	22,177,400 - 22,194,298 (-)	NCBI

Sequence:

show sequence

AATCCAGAGACCTGTTGCTGAGTTGAACTTGGCTGCTGTGTCTTCCCACTCAGGACTCGGCTTT
GACAGGCACGAGGCAGGGACTGGGGTGAGCCCCTACCTCTCAGATCTTTCTGGACCTGGGTAGG
ACCTGCAGTTTCCCAGGGGAGACCCGGACCGGGAGTAAGGGTGAGGTGGACCCTGACCTTTCCC
ATCCACAGCTGCGGGTCCTGGGATCTTCAGCGCGGCTTGGATTTCAAACTGGAGGGGTTCAGGA
GGGGGCACAAGCATGGAACAACGTTGGGGTCTACTTCGGAAAGTGCAACAGTGGTCCCCAAGAC
CCTCTCAGACCATCTACAGACGTGTGGAAGGCCCTCAACTGGAGAACCTAGAGGAGGAAGATAG
GGAGGAAGGGGAGGAGCTTCCTGCCCAGTTCTGCCCCATGGAACTCAAAGGCCCTGAGCGCTTA
GGCTCCTGTCCTGGGAGGTCCATTCCCATACCCTGGGCTGCAGCAGGTCGAAAGGCTGCTCCCT
ATCTGGTCCTGACCACCCTGCTAATCTTCACTGGGGCCTTCCTCCTGGGCTACGTGGCCTTTCG
AGGGTCCTGCCAGGCATGTGGGGACTCTGTGTTGGTGGTTGGTGAAGATGTCAACTCTGAGGAC
TCCAGCCGGGGCACGTTGTACTGGAGTGACCTCCAGGACATGTTTCTCCGGTTCCTTGGGGAGG
GACGCATGGAGGACACCATCAGGCTGACCAGCCTCCGGGAACGCGTGGCCGGCTCAGCCAGAAT
GGCCACCCTGGTCCAAGACATCCTCGATAAGCTCTCGCGCCAGAAGCTGGACCACGTGTGGACT
GACACGCACTATGTGGGACTTCAGTTCCCGGACCCGGCTCACCCTAACACCCTGCACTGGGTGG
GTGCAGACGGGAGCGTCCAAGAGCAGCTACCGCTGGAGGATCCGGAAGTCTACTGTCCCTACAG
CGCCACGGGCAACGCCACGGGCAAGCTTGTGTACGCCCACTACGGGCGGCGGGAGGACCTGCAG
GACCTGAAAGCCAAGGACGTGGAGCTGGCCGGCAGCCTCCTGCTAGTGCGTGCTGGGATTACAA
GCTTCGCCCAGAAGGTAGCCATTGCCCAGGACTTTGGGGCCCACGGAGTGCTGATATACCCTGA
CCCAGCGGACTTCTCCCAAGACCCCCACAAGCCAGGCCTGTCTAGTGACAGGGCTGTGTATGGA
CATGTGCACCTGGGAACTGGGGACCCTTACACGCCTGGCTTCCCGTCCTTCAATCAAACCCAGT
TCCCTCCAGTAGAATCATCGGGGCTTCCCAACATCCCTGCCCAGCCCATCAGTGCCGACGTTGC
TGATCGCTTGCTCAGGAAACTCACAGGTCCCGTGGCTCCTCAGGAATGGAAGGGTCGCCTCTCA
GACTCTCCGTATCGCCTGGGACCTGGGCCAGGCTTACGCCTTGTGGTCAACAACCACAGAACCT
CTACTCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTCGCAGAGCCAGATCACTATGTCGT
TATCGGGGCCCAGAGGGATGCCTGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCATC
CTCCTGGAGCTGGTTCGGACCTTTTCCTCCATGGTCAGCAGTGGCTTTAGACCTCGAAGAAGTC
TTTTGTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACGGAGTGGTTGGAGGG
CTACCTCAGCGTGCTACACCTCAAAGCTGTCGTGTATGTGAGCCTGGACAACTCCGTGTTGGGA
GACGGCAAATTCCATGCTAAGACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCCTGAAGC
AGGTGGATTCCCCTAACCACAGTGGACAGACACTCTACGATCAAGTGGCATTCACCCACCCAAG
CTGGGATGCTGAAGTGATCCAGCCCCTGCCCATGGACAGCAGCGCATATTCCTTCACAGCTTTT
GCGGGCGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGACGATAGGGTGTACCCATTCCTGCACA
CGAAGGAGGACACGTATGAGAATCTGCACAAGATGCTGCGAGGTCGCCTGCCCGCCGTGGTCCT
AGCAGTGGCTCAGCTCGCTGGTCAGCTCCTCATCCGACTGAGCCACGATCACCTACTGCCGCTG
GACTTCGGCCGCTACGGAGACGTGGTCCTCAGGCACATCGGCAACCTTAATGAGTTCTCTGGGG
ACCTCAAGGCGCGCGGGCTGACCCTGCAGTGGGTGTACTCTGCAAGGGGGGACTATATCCGGGC
GGCGGAGAAGCTGCGGAAGGAGATTTACAGCTCGGAGCAGAGCGATGAGCGTCTGATGCGCATG
TACAACGTGCGCATCATGAGGGTGGAGTTCTACTTCCTGTCCCAGTACGTGTCGCCGGCCGACT
CCCCATTCCGCCACATTTTCCTAGGCCAAGGCGACCACACTTTGGGTGCCCTGGTGGAACACCT
ACGGATGCTGCGCTCCGATGGCTCAGGAGCTGCCTCTTCTGGGTTGAGCCCAGGTCTGGGCTTC
CAGGAGAGTCGCTTCCGGCGACAGCTGGCGCTGCTCACGTGGACGCTACAGGGGGCAGCCAACG
CACTCAGTGGCGACGTTTGGAACATCGACAATAACTTTTGAGGCCAGAAGTCCTCCATGGGCCC
CACGTGATTCTCCTTTCTCCCTATTTGAGTGGTGCAGGCAACGGAGGTGCCTGAGAGCAACCTA
TCCTCATTAACAACCTTGGTCCTGCAACGCCAGTGAGACATATTTTCTCAGTGTGACTGTTATA
CCACTGTTTATCCAGAAAGCGGTTTTCTTCCCATCACTGGCCTCTCTGCCTTCAGGAGCATAGT
TCCCCATATCTAGAAACCATCTAGACACTGGGATCCAGCTCTCTTAGCGGGTGAGATGGATAGC
GTCATTTTCTTATGACACACAAGTGGTATGTGGGTGGCCCAAGGGGGATTAGATGTCAATAAAC
CATTTACCTGGTAA

hide sequence

RefSeq Acc Id:

XM_008769127 ⟹ XP_008767349

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	24,744,468 - 24,761,413 (-)	NCBI
mRatBN7.2	12	19,107,691 - 19,124,622 (-)	NCBI
Rnor_6.0	12	22,177,400 - 22,194,330 (-)	NCBI

Sequence:

show sequence

GGCTTTGAGTCTTCTGGGAGCATGGTCCAAGAAATCCAGAGACCTGTTGCTGAGTTGAACTTGG
CTGCTGTGTCTTCCCACTCAGGACTCGGCTTTGACAGGCACGAGGCAGGGACTGGGGGTTCAGG
AGGGGGCACAAGCATGGAACAACGTTGGGGTCTACTTCGGAAAGTGCAACAGTGGTCCCCAAGA
CCCTCTCAGACCATCTACAGACGTGTGGAAGGCCCTCAACTGGAGAACCTAGAGGAGGAAGATA
GGGAGGAAGGGGAGGAGCTTCCTGCCCAGTTCTGCCCCATGGAACTCAAAGGCCCTGAGCGCTT
AGGCTCCTGTCCTGGGAGGTCCATTCCCATACCCTGGGCTGCAGCAGGTCGAAAGGCTGCTCCC
TATCTGGTCCTGACCACCCTGCTAATCTTCACTGGGGCCTTCCTCCTGGGCTACGTGGCCTTTC
GAGGGTCCTGCCAGGCATGTGGGGACTCTGTGTTGGTGGTTGGTGAAGATGTCAACTCTGAGGA
CTCCAGCCGGGGCACGTTGTACTGGAGTGACCTCCAGGACATGTTTCTCCGGTTCCTTGGGGAG
GGACGCATGGAGGACACCATCAGGCTGACCAGCCTCCGGGAACGCGTGGCCGGCTCAGCCAGAA
TGGCCACCCTGGTCCAAGACATCCTCGATAAGCTCTCGCGCCAGAAGCTGGACCACGTGTGGAC
TGACACGCACTATGTGGGACTTCAGTTCCCGGACCCGGCTCACCCTAACACCCTGCACTGGGTG
GGTGCAGACGGGAGCGTCCAAGAGCAGCTACCGCTGGAGGATCCGGAAGTCTACTGTCCCTACA
GCGCCACGGGCAACGCCACGGGCAAGCTTGTGTACGCCCACTACGGGCGGCGGGAGGACCTGCA
GGACCTGAAAGCCAAGGACGTGGAGCTGGCCGGCAGCCTCCTGCTAGTGCGTGCTGGGATTACA
AGCTTCGCCCAGAAGGTAGCCATTGCCCAGGACTTTGGGGCCCACGGAGTGCTGATATACCCTG
ACCCAGCGGACTTCTCCCAAGACCCCCACAAGCCAGGCCTGTCTAGTGACAGGGCTGTGTATGG
ACATGTGCACCTGGGAACTGGGGACCCTTACACGCCTGGCTTCCCGTCCTTCAATCAAACCCAG
TTCCCTCCAGTAGAATCATCGGGGCTTCCCAACATCCCTGCCCAGCCCATCAGTGCCGACGTTG
CTGATCGCTTGCTCAGGAAACTCACAGGTCCCGTGGCTCCTCAGGAATGGAAGGGTCGCCTCTC
AGACTCTCCGTATCGCCTGGGACCTGGGCCAGGCTTACGCCTTGTGGTCAACAACCACAGAACC
TCTACTCCCATCAGTAACATCTTTGCGTGCATCGAGGGCTTCGCAGAGCCAGATCACTATGTCG
TTATCGGGGCCCAGAGGGATGCCTGGGGCCCAGGAGCAGCCAAGTCTGCAGTGGGGACTGCCAT
CCTCCTGGAGCTGGTTCGGACCTTTTCCTCCATGGTCAGCAGTGGCTTTAGACCTCGAAGAAGT
CTTTTGTTCATCAGCTGGGACGGAGGTGACTTTGGCAGCGTGGGAGCCACGGAGTGGTTGGAGG
GCTACCTCAGCGTGCTACACCTCAAAGCTGTCGTGTATGTGAGCCTGGACAACTCCGTGTTGGG
AGACGGCAAATTCCATGCTAAGACCAGCCCCCTTCTCGTCAGCCTCATTGAGAATATCCTGAAG
CAGGTGGATTCCCCTAACCACAGTGGACAGACACTCTACGATCAAGTGGCATTCACCCACCCAA
GCTGGGATGCTGAAGTGATCCAGCCCCTGCCCATGGACAGCAGCGCATATTCCTTCACAGCTTT
TGCGGGCGTCCCAGCTGTGGAGTTCTCCTTCATGGAGGCGCGCGGGCTGACCCTGCAGTGGGTG
TACTCTGCAAGGGGGGACTATATCCGGGCGGCGGAGAAGCTGCGGAAGGAGATTTACAGCTCGG
AGCAGAGCGATGAGCGTCTGATGCGCATGTACAACGTGCGCATCATGAGGGTGGAGTTCTACTT
CCTGTCCCAGTACGTGTCGCCGGCCGACTCCCCATTCCGCCACATTTTCCTAGGCCAAGGCGAC
CACACTTTGGGTGCCCTGGTGGAACACCTACGGATGCTGCGCTCCGATGGCTCAGGAGCTGCCT
CTTCTGGGTTGAGCCCAGGTCTGGGCTTCCAGGAGAGTCGCTTCCGGCGACAGCTGGCGCTGCT
CACGTGGACGCTACAGGGGGCAGCCAACGCACTCAGTGGCGACGTTTGGAACATCGACAATAAC
TTTTGAGGCCAGAAGTCCTCCATGGGCCCCACGTGATTCTCCTTTCTCCCTATTTGAGTGGTGC
AGGCAACGGAGGTGCCTGAGAGCAACCTATCCTCATTAACAACCTTGGTCCTGCAACGCCAGTG
AGACATATTTTCTCAGTGTGACTGTTATACCACTGTTTATCCAGAAAGCGGTTTTCTTCCCATC
ACTGGCCTCTCTGCCTTCAGGAGCATAGTTCCCCATATCTAGAAACCATCTAGACACTGGGATC
CAGCTCTCTTAGCGGGTGAGATGGATAGCGTCATTTTCTTATGACACACAAGTGGTATGTGGGT
GGCCCAAGGGGGATTAGATGTCAATAAACCATTTACCTGGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099386	(Get FASTA)	NCBI Sequence Viewer
	XP_006249178	(Get FASTA)	NCBI Sequence Viewer
	XP_006249179	(Get FASTA)	NCBI Sequence Viewer
	XP_006249180	(Get FASTA)	NCBI Sequence Viewer
	XP_008767347	(Get FASTA)	NCBI Sequence Viewer
	XP_008767349	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66451	(Get FASTA)	NCBI Sequence Viewer
	B2GUY2	(Get FASTA)	NCBI Sequence Viewer
	EDM13257	(Get FASTA)	NCBI Sequence Viewer
	EDM13258	(Get FASTA)	NCBI Sequence Viewer
	EDM13259	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001905
	ENSRNOP00000001905.4
	ENSRNOP00000072585.2

RefSeq Acc Id:

NP_001099386 ⟸ NM_001105916

- UniProtKB:

B2GUY2 (UniProtKB/Swiss-Prot), A0A8L2UQK5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEQRWGLLRKVQQWSPRPSQTIYRRVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCP
GRSIPIPWAAAGRKAAPYLVLTTLLIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRG
TLYWSDLQDMFLRFLGEGRMEDTIRLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHY
VGLQFPDPAHPNTLHWVGADGSVQEQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKA
KDVELAGSLLLVRAGITSFAQKVAIAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHL
GTGDPYTPGFPSFNQTQFPPVESSGLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPY
RLGPGPGLRLVVNNHRTSTPISNIFACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLEL
VRTFSSMVSSGFRPRRSLLFISWDGGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKF
HAKTSPLLVSLIENILKQVDSPNHSGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVP
AVEFSFMEDDRVYPFLHTKEDTYENLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLLPLDFGR
YGDVVLRHIGNLNEFSGDLKARGLTLQWVYSARGDYIRAAEKLRKEIYSSEQSDERLMRMYNVR
IMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALVEHLRMLRSDGSGAASSGLSPGLGFQESR
FRRQLALLTWTLQGAANALSGDVWNIDNNF

hide sequence

RefSeq Acc Id:	XP_006249178 ⟸ XM_006249116
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UQK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQEIQRPVAELNLAAVSSHSGLGFDRHEAGTGGSGGGTSMEQRWGLLRKVQQWSPRPSQTIYR RVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCPGRSIPIPWAAAGRKAAPYLVLTTL LIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRGTLYWSDLQDMFLRFLGEGRMEDTI RLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHYVGLQFPDPAHPNTLHWVGADGSVQ EQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKAKDVELAGSLLLVRAGITSFAQKVA IAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHLGTGDPYTPGFPSFNQTQFPPVESS GLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPYRLGPGPGLRLVVNNHRTSTPISNI FACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLELVRTFSSMVSSGFRPRRSLLFISWD GGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKFHAKTSPLLVSLIENILKQVDSPNH SGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVPAVEFSFMEDDRVYPFLHTKEDTYE NLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLLPLDFGRYGDVVLRHIGNLNEFSGDLKARGL TLQWVYSARGDYIRAAEKLRKEIYSSEQSDERLMRMYNVRIMRVEFYFLSQYVSPADSPFRHIF LGQGDHTLGALVEHLRMLRSDGSGAASSGLSPGLGFQESRFRRQLALLTWTLQGAANALSGDVW NIDNNF hide sequence

RefSeq Acc Id:	XP_006249180 ⟸ XM_006249118
- Peptide Label:	isoform X2
- UniProtKB:	B2GUY2 (UniProtKB/Swiss-Prot), A0A8L2UQK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQRWGLLRKVQQWSPRPSQTIYRRVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCP GRSIPIPWAAAGRKAAPYLVLTTLLIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRG TLYWSDLQDMFLRFLGEGRMEDTIRLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHY VGLQFPDPAHPNTLHWVGADGSVQEQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKA KDVELAGSLLLVRAGITSFAQKVAIAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHL GTGDPYTPGFPSFNQTQFPPVESSGLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPY RLGPGPGLRLVVNNHRTSTPISNIFACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLEL VRTFSSMVSSGFRPRRSLLFISWDGGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKF HAKTSPLLVSLIENILKQVDSPNHSGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVP AVEFSFMEDDRVYPFLHTKEDTYENLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLLPLDFGR YGDVVLRHIGNLNEFSGDLKARGLTLQWVYSARGDYIRAAEKLRKEIYSSEQSDERLMRMYNVR IMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALVEHLRMLRSDGSGAASSGLSPGLGFQESR FRRQLALLTWTLQGAANALSGDVWNIDNNF hide sequence

RefSeq Acc Id:	XP_006249179 ⟸ XM_006249117
- Peptide Label:	isoform X2
- UniProtKB:	B2GUY2 (UniProtKB/Swiss-Prot), A0A8L2UQK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQRWGLLRKVQQWSPRPSQTIYRRVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCP GRSIPIPWAAAGRKAAPYLVLTTLLIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRG TLYWSDLQDMFLRFLGEGRMEDTIRLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHY VGLQFPDPAHPNTLHWVGADGSVQEQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKA KDVELAGSLLLVRAGITSFAQKVAIAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHL GTGDPYTPGFPSFNQTQFPPVESSGLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPY RLGPGPGLRLVVNNHRTSTPISNIFACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLEL VRTFSSMVSSGFRPRRSLLFISWDGGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKF HAKTSPLLVSLIENILKQVDSPNHSGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVP AVEFSFMEDDRVYPFLHTKEDTYENLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLLPLDFGR YGDVVLRHIGNLNEFSGDLKARGLTLQWVYSARGDYIRAAEKLRKEIYSSEQSDERLMRMYNVR IMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALVEHLRMLRSDGSGAASSGLSPGLGFQESR FRRQLALLTWTLQGAANALSGDVWNIDNNF hide sequence

RefSeq Acc Id:	XP_008767349 ⟸ XM_008769127
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2UQK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQEIQRPVAELNLAAVSSHSGLGFDRHEAGTGGSGGGTSMEQRWGLLRKVQQWSPRPSQTIYR RVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCPGRSIPIPWAAAGRKAAPYLVLTTL LIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRGTLYWSDLQDMFLRFLGEGRMEDTI RLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHYVGLQFPDPAHPNTLHWVGADGSVQ EQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKAKDVELAGSLLLVRAGITSFAQKVA IAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHLGTGDPYTPGFPSFNQTQFPPVESS GLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPYRLGPGPGLRLVVNNHRTSTPISNI FACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLELVRTFSSMVSSGFRPRRSLLFISWD GGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKFHAKTSPLLVSLIENILKQVDSPNH SGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVPAVEFSFMEARGLTLQWVYSARGDY IRAAEKLRKEIYSSEQSDERLMRMYNVRIMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALV EHLRMLRSDGSGAASSGLSPGLGFQESRFRRQLALLTWTLQGAANALSGDVWNIDNNF hide sequence

RefSeq Acc Id:	XP_008767347 ⟸ XM_008769125
- Peptide Label:	isoform X2
- UniProtKB:	B2GUY2 (UniProtKB/Swiss-Prot), A0A8L2UQK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQRWGLLRKVQQWSPRPSQTIYRRVEGPQLENLEEEDREEGEELPAQFCPMELKGPERLGSCP GRSIPIPWAAAGRKAAPYLVLTTLLIFTGAFLLGYVAFRGSCQACGDSVLVVGEDVNSEDSSRG TLYWSDLQDMFLRFLGEGRMEDTIRLTSLRERVAGSARMATLVQDILDKLSRQKLDHVWTDTHY VGLQFPDPAHPNTLHWVGADGSVQEQLPLEDPEVYCPYSATGNATGKLVYAHYGRREDLQDLKA KDVELAGSLLLVRAGITSFAQKVAIAQDFGAHGVLIYPDPADFSQDPHKPGLSSDRAVYGHVHL GTGDPYTPGFPSFNQTQFPPVESSGLPNIPAQPISADVADRLLRKLTGPVAPQEWKGRLSDSPY RLGPGPGLRLVVNNHRTSTPISNIFACIEGFAEPDHYVVIGAQRDAWGPGAAKSAVGTAILLEL VRTFSSMVSSGFRPRRSLLFISWDGGDFGSVGATEWLEGYLSVLHLKAVVYVSLDNSVLGDGKF HAKTSPLLVSLIENILKQVDSPNHSGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVP AVEFSFMEDDRVYPFLHTKEDTYENLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLLPLDFGR YGDVVLRHIGNLNEFSGDLKARGLTLQWVYSARGDYIRAAEKLRKEIYSSEQSDERLMRMYNVR IMRVEFYFLSQYVSPADSPFRHIFLGQGDHTLGALVEHLRMLRSDGSGAASSGLSPGLGFQESR FRRQLALLTWTLQGAANALSGDVWNIDNNF hide sequence

RefSeq Acc Id:

ENSRNOP00000072585 ⟸ ENSRNOT00000082895

RefSeq Acc Id:

ENSRNOP00000001905 ⟸ ENSRNOT00000001905

Protein Domains

PA Peptidase M28

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GUY2-F1-model_v2	AlphaFold	B2GUY2	1-798	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698522

Promoter ID:

EPDNEW_R9041

Type:

multiple initiation site

Name:

Tfr2_1

Description:

transferrin receptor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	22,194,293 - 22,194,353	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310152	AgrOrtholog
BioCyc Gene	G2FUF-19707	BioCyc
Ensembl Genes	ENSRNOG00000001407	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001905	ENTREZGENE
	ENSRNOT00000001905.7	UniProtKB/Swiss-Prot
	ENSRNOT00000082895.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.930.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.50.30.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zn peptidases	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8371649	IMAGE-MGC_LOAD
InterPro	PA_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PA_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_M28	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_M28B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFR-like_dimer_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TfR1/2_PA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:288562	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187679	IMAGE-MGC_LOAD
NCBI Gene	288562	ENTREZGENE
PANTHER	PTHR10404	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSFERRIN RECEPTOR PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Peptidase_M28	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF02225	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tfr2	PhenoGen
RatGTEx	ENSRNOG00000001407	RatGTEx
Superfamily-SCOP	PA domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47672	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zn-dependent exopeptidases	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2UQK5	ENTREZGENE, UniProtKB/TrEMBL
	B2GUY2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Tfr2	transferrin receptor 2	Trfr2	transferrin receptor 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Trfr2	transferrin receptor 2	Trfr2_predicted	transferrin receptor 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Trfr2_predicted	transferrin receptor 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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