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Gene: Mindy3 (MINDY lysine 48 deubiquitinase 3) Rattus norvegicus

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Symbol:

Mindy3

Name:

MINDY lysine 48 deubiquitinase 3

RGD ID:

1309605

Description:

Predicted to enable K48-linked deubiquitinase activity and cysteine-type deubiquitinase activity. Predicted to be involved in protein K48-linked deubiquitination and proteolysis. Predicted to be located in nuclear membrane and nucleoplasm. Orthologous to human MINDY3 (MINDY lysine 48 deubiquitinase 3); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam188a; family with sequence similarity 188, member A; LOC291320; RGD1309605; similar to RIKEN cDNA 2310047O13; ubiquitin carboxyl-terminal hydrolase MINDY-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CGRRF1 (cell growth regulator with ring finger domain 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MINDY3 (MINDY lysine 48 deubiquitinase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mindy3 (MINDY lysine 48 deubiquitinase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7332	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mindy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mindy3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,454,404 - 80,532,999 (-)	NCBI		GRCr8
mRatBN7.2	17	75,545,286 - 75,623,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	79,004,991 - 79,083,646 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,840,328 - 82,918,988 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,888,261 - 76,966,923 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	86,713,857 - 86,956,893 (-)	NCBI
Celera	17	74,921,510 - 74,998,724 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	hypoparathyroidism-deafness-renal disease syndrome		ISO	MINDY3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypoparathyroidism more ...	ClinVar	PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	Experimental Liver Cirrhosis		ISO	MINDY3 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Mindy3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of MINDY3 mRNA	CTD	PMID:22206623
Mindy3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Mindy3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of MINDY3 mRNA	CTD	PMID:22206623
Mindy3	Rat	1-naphthyl isothiocyanate	increases expression	EXP		6480464	1-Naphthylisothiocyanate results in increased expression of MINDY3 mRNA	CTD	PMID:25380136
Mindy3	Rat	17beta-estradiol	increases expression	ISO	Mindy3 (Mus musculus)	6480464	Estradiol results in increased expression of MINDY3 mRNA	CTD	PMID:39298647
Mindy3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of MINDY3 mRNA	CTD	PMID:21215274
Mindy3	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Mindy3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin binds to AHR protein] which results in decreased expression of MINDY3 mRNA	CTD	PMID:16214954
Mindy3	Rat	2-hydroxypropanoic acid	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of MINDY3 mRNA	CTD	PMID:30851411
Mindy3	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of MINDY3 mRNA	CTD	PMID:28628672
Mindy3	Rat	4,4'-diaminodiphenylmethane	increases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in increased expression of MINDY3 mRNA	CTD	PMID:25380136
Mindy3	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of MINDY3 mRNA	CTD	PMID:28628672
Mindy3	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Mindy3 (Mus musculus)	6480464	bisphenol S results in increased expression of MINDY3 mRNA	CTD	PMID:39298647
Mindy3	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of MINDY3 mRNA	CTD	PMID:30047161
Mindy3	Rat	aflatoxin B1	increases methylation	ISO	MINDY3 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of MINDY3 gene and Aflatoxin B1 results in increased methylation of MINDY3 intron	CTD	PMID:28458013 and PMID:30157460
Mindy3	Rat	aflatoxin B1	decreases methylation	ISO	MINDY3 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of MINDY3 gene	CTD	PMID:27153756
Mindy3	Rat	all-trans-retinoic acid	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Tretinoin results in increased expression of MINDY3 mRNA	CTD	PMID:33167477
Mindy3	Rat	arsane	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MINDY3 mRNA	CTD	PMID:39836092
Mindy3	Rat	arsenic atom	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MINDY3 mRNA	CTD	PMID:39836092
Mindy3	Rat	arsenite(3-)	increases methylation	ISO	MINDY3 (Homo sapiens)	6480464	arsenite results in increased methylation of MINDY3 promoter	CTD	PMID:23974009
Mindy3	Rat	atrazine	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Atrazine results in decreased expression of MINDY3 mRNA	CTD	PMID:22378314
Mindy3	Rat	benzo[a]pyrene	affects methylation	ISO	MINDY3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of MINDY3 promoter	CTD	PMID:27901495
Mindy3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of MINDY3 mRNA	CTD	PMID:25181051
Mindy3	Rat	bisphenol A	decreases methylation	ISO	MINDY3 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of MINDY3 gene	CTD	PMID:31601247
Mindy3	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of MINDY3 gene	CTD	PMID:28505145
Mindy3	Rat	cadmium atom	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MINDY3 mRNA	CTD	PMID:35301059
Mindy3	Rat	cadmium dichloride	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of MINDY3 mRNA	CTD	PMID:38568856
Mindy3	Rat	cadmium dichloride	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MINDY3 mRNA	CTD	PMID:35301059
Mindy3	Rat	carbon nanotube	increases expression	ISO	Mindy3 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Mindy3	Rat	cisplatin	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Cisplatin results in increased expression of MINDY3 mRNA	CTD	PMID:27392435
Mindy3	Rat	crocidolite asbestos	decreases expression	ISO	Mindy3 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of MINDY3 mRNA	CTD	PMID:29279043
Mindy3	Rat	cyclosporin A	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of MINDY3 mRNA	CTD	PMID:20106945 and PMID:25562108
Mindy3	Rat	dexamethasone	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of MINDY3 mRNA	CTD	PMID:28628672
Mindy3	Rat	Dibutyl phosphate	affects expression	ISO	MINDY3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of MINDY3 mRNA	CTD	PMID:37042841
Mindy3	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of MINDY3 mRNA	CTD	PMID:21266533
Mindy3	Rat	dorsomorphin	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MINDY3 mRNA	CTD	PMID:27188386
Mindy3	Rat	epoxiconazole	decreases expression	ISO	Mindy3 (Mus musculus)	6480464	epoxiconazole results in decreased expression of MINDY3 mRNA	CTD	PMID:35436446
Mindy3	Rat	ethyl methanesulfonate	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of MINDY3 mRNA	CTD	PMID:23649840
Mindy3	Rat	flutamide	decreases expression	EXP		6480464	Flutamide results in decreased expression of MINDY3 mRNA	CTD	PMID:24136188
Mindy3	Rat	folic acid	multiple interactions	ISO	Mindy3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of MINDY3 mRNA	CTD	PMID:22206623
Mindy3	Rat	formaldehyde	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Formaldehyde results in increased expression of MINDY3 mRNA	CTD	PMID:23649840
Mindy3	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of MINDY3 mRNA	CTD	PMID:22061828 and PMID:33387578
Mindy3	Rat	indometacin	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of MINDY3 mRNA	CTD	PMID:28628672
Mindy3	Rat	ivermectin	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Ivermectin results in decreased expression of MINDY3 protein	CTD	PMID:32959892
Mindy3	Rat	lead(0)	affects methylation	ISO	MINDY3 (Homo sapiens)	6480464	Lead affects the methylation of MINDY3 gene	CTD	PMID:31636367
Mindy3	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of MINDY3 mRNA	CTD	PMID:30047161
Mindy3	Rat	methyl methanesulfonate	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of MINDY3 mRNA	CTD	PMID:23649840
Mindy3	Rat	N-nitrosodimethylamine	increases expression	EXP		6480464	Dimethylnitrosamine results in increased expression of MINDY3 mRNA	CTD	PMID:25380136
Mindy3	Rat	nefazodone	decreases expression	EXP		6480464	nefazodone results in decreased expression of MINDY3 mRNA	CTD	PMID:24136188
Mindy3	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of MINDY3 mRNA	CTD	PMID:33387578
Mindy3	Rat	rac-lactic acid	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of MINDY3 mRNA	CTD	PMID:30851411
Mindy3	Rat	SB 431542	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MINDY3 mRNA	CTD	PMID:27188386
Mindy3	Rat	sodium arsenite	affects expression	ISO	MINDY3 (Homo sapiens)	6480464	sodium arsenite affects the expression of MINDY3 mRNA	CTD	PMID:29319823
Mindy3	Rat	sodium arsenite	decreases expression	ISO	Mindy3 (Mus musculus)	6480464	sodium arsenite results in decreased expression of MINDY3 mRNA	CTD	PMID:37682722
Mindy3	Rat	sodium arsenite	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MINDY3 mRNA	CTD	PMID:39836092
Mindy3	Rat	sodium arsenite	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	sodium arsenite results in increased expression of MINDY3 mRNA	CTD	PMID:38568856
Mindy3	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of MINDY3 mRNA	CTD	PMID:19281266
Mindy3	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of MINDY3 mRNA	CTD	PMID:30047161
Mindy3	Rat	sunitinib	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Sunitinib results in increased expression of MINDY3 mRNA	CTD	PMID:31533062
Mindy3	Rat	temozolomide	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Temozolomide results in decreased expression of MINDY3 mRNA	CTD	PMID:31758290
Mindy3	Rat	testosterone	decreases expression	ISO	MINDY3 (Homo sapiens)	6480464	Testosterone results in decreased expression of MINDY3 mRNA	CTD	PMID:33359661
Mindy3	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of MINDY3 mRNA	CTD	PMID:34492290
Mindy3	Rat	titanium dioxide	decreases methylation	ISO	Mindy3 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of MINDY3 gene	CTD	PMID:35295148
Mindy3	Rat	triptonide	increases expression	ISO	Mindy3 (Mus musculus)	6480464	triptonide results in increased expression of MINDY3 mRNA	CTD	PMID:33045310
Mindy3	Rat	troglitazone	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	troglitazone results in increased expression of MINDY3 mRNA	CTD	PMID:19140230
Mindy3	Rat	tungsten	increases expression	ISO	Mindy3 (Mus musculus)	6480464	Tungsten results in increased expression of MINDY3 mRNA	CTD	PMID:30912803
Mindy3	Rat	valproic acid	affects expression	ISO	MINDY3 (Homo sapiens)	6480464	Valproic Acid affects the expression of MINDY3 mRNA	CTD	PMID:25979313
Mindy3	Rat	valproic acid	increases expression	ISO	MINDY3 (Homo sapiens)	6480464	Valproic Acid results in increased expression of MINDY3 mRNA	CTD	PMID:23179753 more ...
Mindy3	Rat	valproic acid	multiple interactions	ISO	MINDY3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MINDY3 mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	protein K48-linked deubiquitination	involved_in	IEA	InterPro:IPR039785	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Mindy3	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	nuclear membrane	located_in	ISO	MINDY3 (Homo sapiens) and UniProtKB:Q9H8M7-1	1624291		RGD	GO_REF:0000052
Mindy3	Rat	nuclear membrane	located_in	IEA	UniProtKB:Q9H8M7 and ensembl:ENSP00000277632	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Mindy3	Rat	nucleoplasm	located_in	ISO	MINDY3 (Homo sapiens) and UniProtKB:Q9H8M7-1	1624291		RGD	GO_REF:0000052
Mindy3	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q9H8M7 and ensembl:ENSP00000277632	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Rat	cysteine-type deubiquitinase activity	enables	ISO	MINDY3 (Homo sapiens)	1624291	PMID:27292798	RGD	PMID:27292798
Mindy3	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR001419755	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Mindy3	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Mindy3	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9H8M7 and ensembl:ENSP00000277632	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Mindy3	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR039785	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Mindy3	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mindy3	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mindy3	Rat	K48-linked deubiquitinase activity	enables	ISO	MINDY3 (Homo sapiens)	1624291	PMID:27292798	RGD	PMID:27292798
Mindy3	Rat	K48-linked deubiquitinase activity	enables	IEA	UniRule:UR001419755	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Mindy3	Rat	K48-linked deubiquitinase activity	enables	IEA	UniProtKB:Q9H8M7 and ensembl:ENSP00000277632	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Mindy3	Rat	K48-linked deubiquitinase activity	enables	IBA	PANTHER:PTN000279908 and UniProtKB:Q9H8M7	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Mindy3	Rat	K48-linked deubiquitinase activity	enables	IEA	InterPro:IPR039785	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Mindy3	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mindy3	Rat	protein binding	enables	ISO	MINDY3 (Homo sapiens)	1624291	UniProtKB:O00560 more ...	RGD	PMID:21499297 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:27292798

Mindy3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,454,404 - 80,532,999 (-)	NCBI		GRCr8
mRatBN7.2	17	75,545,286 - 75,623,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	79,004,991 - 79,083,646 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,840,328 - 82,918,988 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,888,261 - 76,966,923 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	86,713,857 - 86,956,893 (-)	NCBI
Celera	17	74,921,510 - 74,998,724 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

MINDY3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	15,778,174 - 15,860,507 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	15,778,170 - 15,860,507 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	15,820,173 - 15,902,506 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	15,860,181 - 15,942,525 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	15,860,180 - 15,942,525	NCBI
Celera	10	15,753,418 - 15,835,764 (-)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	15,732,561 - 15,814,922 (-)	NCBI		HuRef
CHM1_1	10	15,820,225 - 15,902,566 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	15,796,178 - 15,878,518 (-)	NCBI		T2T-CHM13v2.0

Mindy3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	12,352,074 - 12,424,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	12,352,074 - 12,424,281 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	12,347,263 - 12,419,489 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	12,347,263 - 12,419,470 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	12,268,891 - 12,341,087 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	12,265,117 - 12,337,313 (-)	NCBI		MGSCv36	mm8
Celera	2	12,260,745 - 12,332,603 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	9.27	NCBI

Mindy3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	11,805,080 - 11,890,103 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	11,805,205 - 11,890,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

MINDY3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	28,627,068 - 28,709,225 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	28,632,395 - 28,714,551 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	16,101,605 - 16,183,746 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	16,377,064 - 16,459,134 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	16,377,064 - 16,459,135 (-)	Ensembl	panpan1.1		panPan2

MINDY3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	20,948,946 - 21,014,938 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	20,865,946 - 21,014,429 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	18,041,164 - 18,125,213 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	21,223,797 - 21,307,880 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	21,223,812 - 21,307,880 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	18,430,539 - 18,514,602 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	19,264,996 - 19,349,027 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	19,890,285 - 19,974,351 (+)	NCBI		UU_Cfam_GSD_1.0

Mindy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	6,205,442 - 6,296,345 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936574	6,205,419 - 6,296,385 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MINDY3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	45,980,111 - 46,062,700 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	45,980,088 - 46,062,700 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	50,676,092 - 50,758,110 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MINDY3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	15,738,104 - 15,820,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	15,737,625 - 15,820,266 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	21,328,221 - 21,410,447 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mindy3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	11,778,201 - 11,863,318 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624796	11,778,932 - 11,862,882 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Mindy3
620 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	270
Count of miRNA genes:	180
Interacting mature miRNAs:	207
Transcripts:	ENSRNOT00000022986
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	71774621	82479847	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	71003325	81153923	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat

RH129970

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	75,545,368 - 75,545,550 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	79,720,617 - 79,720,798	NCBI	Rnor6.0
Rnor_5.0	17	81,349,030 - 81,349,211	UniSTS	Rnor5.0
RGSC_v3.4	17	86,693,578 - 86,693,759	UniSTS	RGSC3.4
Celera	17	74,921,592 - 74,921,773	UniSTS
RH 3.4 Map	17	766.0	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022986 ⟹ ENSRNOP00000022986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl

RefSeq Acc Id:

NM_001106122 ⟹ NP_001099592

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,405 - 80,532,960 (-)	NCBI
mRatBN7.2	17	75,545,287 - 75,623,846 (-)	NCBI
Rnor_6.0	17	79,720,535 - 79,798,435 (-)	NCBI
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	RGD
Celera	17	74,921,510 - 74,998,724 (-)	RGD

Sequence:

show sequence

TCCTAGTTGCGGCTTCGCCCGGCTTGACAGGCGCTGTCTCTGCGGGCACCGAGCTACACTCATCCCGCTCGGCCTCCCAATCGCGCCTCGGCCGCCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCC
TTCCCTATGTTCCGGGACCGGAGTACGGGAAGCAAAGACCCTCTTGTCCAGTCCCCATCATGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGAC
ACCATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAGTGACTCAGAGGGATCTGCATTAGAGCAGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCT
GTTTTCCTCCGAGAAGTCGTCCTGGCGGGATTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTGACAGCTCTGGATCATACTGCATGGTTTCAT
GGTTGAGAGGAAGGACGACTGAGGACGCCGCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGGACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTA
ATTCAAAAAAGATCATTCAGAACTGTATCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTTTTTCTCTATTCTGTATTACTGACAAAGGGCATTGA
AAACATAAAGAATTCAATTGAAGATGCAAACGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATAAACCTCCTCCTGACGGGGCACGCGGTCTCTAACGTGTGGGATGGCGATA
GAGAGTGCTCAGGAATGCAACTTCTCGGTATCCATGAACAAGCAACTGTAGGATTCTTAACACTAATGGAAGCTTTACGCTATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCCCTATTTGG
ATTGTTGGCAGCGAAACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTTCAGACCTATGACCCAGAAGATAATGGATTCAT
AGCCGACACACTTCTAGAGGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATATAAATCTCATGAAGAACAAATTGGATCCAGAAGGATTAGGAATCATATTGTTGGGTCCATTTCTTC
AAGAATTTTTTCCTGACCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTAATGTATGTGGAAGGGACTGCAGTGGTTATGGGT
TTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCGTACATTGAGTTACTGTGGACCACAGACCGCTCTCCTTCACTCAACTGAGTTGCCCGAGTATT
AGTAAGGAAGATTGTCAAACCCGGTGTTGAAAGGGGGATTCATGACTGGCTACATGAAGCTAAACGCTGGTATTGTTGATTAACTGTAAATAACAATTAAAAACACATTTTCAGTGTTTAAGATATGT
TTAAATTATTTGTTCTAAAGCTTTATGTTAAAGGTTATCCTATTTTAATCCTTTCTGTGAAATTTACTAACAAAATTAAGCTTTAATTAAAGTTCATCTCTTCTGCAGTCAGGTAATTGGTCGTTACC
AGATTATAAACACAATATTATAGCATTTTTATAATGACATCAGTCACAAAAACCTGCCTGGAGTATCATTCCATTCATTTCATTTTACTGTAGTATTTTTAGCAGCCTCCATACCAAAATGCAAAGGT
TAATTTTTGTTAATTTTTTTTTTCATTGCTTAAATCTGTTTTTCCATCACAAATACTAATAAATCACAAATTATTGGCCCTGATCCTTTGGTAACAAATTTGACACTAGCATGTTTACAAACAAATAA
GAAAGGATAATATGTGGGAGCTTCTTTGTGTTCACAGGTGCACAGGGATGTGGTTTTACAGTGATGGGGGAAGAATGTGTTGGCTGGGTGGTCTTACACTGTCGCTGTGACTGTACCGCTCAATACAC
TTCTCCACCTTCATTCCTACAAGCCAGCTCTCTTGTATGTTTATAAGCGTGGTAATGCATGAAAACATCTGCTGTTACATTAGCATATTGCATTATTTATTATGGCCCCAGTTAATACCATAAATAAA
GACTTTTCTTTAACTAC

hide sequence

RefSeq Acc Id:

XM_017600495 ⟹ XP_017455984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,883 (-)	NCBI
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI

Sequence:

show sequence

AAGCCGGAAGTCAAGCCGCTTCCGGCAGGGGAAACTCCTAGTTGCGGCTTCGCCCGGCTTGACA
GGCGCTGTCTCTGCGGGCACCGAGCTACACTCATCCCGCTCGGCCTCCCAATCGCGCCTCGGCCGCCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCCTTCCCTATGTTCCGGGACCGGAGTACGGG
AAGCAAAGACCCTCTTGTCCAGTCCCCATCATGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGGGTT
TGTGTTTAGTGACTCAGAGGGATCTGCATTAGAGCAGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCTGTTTTCCTCCGAGAAGTCGTCCTGGCGGG
ATTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTGACAGCTCTGGATCATACTGCATGGTTTCATGGTTGAGAGGAAGGACGACTGAGGACGCC
GCTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGGACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAACTGTATC
AGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTTTTTCTCTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAGAATTCAATTGAAGATGCAA
ACGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATAAACCTCCTCCTGACGGGGCACGCGGTCTCTAACGTGTGGGATGGCGATAGAGAGTGCTCAGGAATGCAACTTCTCGGT
ATCCATGAACAAGCAACTGTAGGATTCTTAACACTAATGGAAGCTTTACGCTATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCCCTATTTGGATTGTTGGCAGCGAAACTCACCTCACCGT
ATTTTTTGCCAAGATTTTCGCAGCCTATGAGGAAGCCTTGTTCCTTGTCTGCAAACGGTTGGACACCTTATGCACTGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTT
TTCAGACCTATGACCCAGAAGATAATGGATTCATAGCCGACACACTTCTAGAGGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATATAAATCTCATGAAGAACAAATTGGATCCAGAA
GGATTAGGAATCATATTGTTGGGTCCATTTCTTCAAGAATTTTTTCCTGACCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGT
AATGTATGTGGAAGGGACTGCAGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCGTACATTGAGTTACTGTGGACCACAGACC
GCTCTCCTTCACTCAACTGAGTTGCCCGAGTATTAGTAAGGAAGATTGTCAAACCCGGTGTTGAAAGGGGGATTCATGACTGGCTACATGAAGCTAAACGCTGGTATTGTTGATTAACTGTAAATAAC
AATTAAAAACACATTTTCAGTGTTTAAGATATGTTTAAATTATTTGTTCTAAAGCTTTATGTTAAAGGTTATCCTATTTTAATCCTTTCTGTGAAATTTACTAACAAAATTAAGCTTTAATTAAAGTT
CATCTCTTCTGCAGTCAGGTAATTGGTCGTTACCAGATTATAAACACAATATTATAGCATTTTTATAATGACATCAGTCACAAAAACCTGCCTGGAGTATCATTCCATTCATTTCATTTTACTGTAGT
ATTTTTAGCAGCCTCCATACCAAAATGCAAAGGTTAATTTTTGTTAATTTTTTTTTTCATTGCTTAAATCTGTTTTTCCATCACAAATACTAATAAATCACAAATTATTGGCCCTGATCCTTTGGTAA
CAAATTTGACACTAGCATGTTTACAAACAAATAAGAAAGGATAATATGTGGGAGCTTCTTTGTGTTCACAGGTGCACAGGGATGTGGTTTTACAGTGATGGGGGAAGAATGTGTTGGCTGGGTGGTCT
TACACTGTCGCTGTGACTGTACCGCTCAATACACTTCTCCACCTTCATTCCTACAAGCCAGCTCTCTTGTATGTTTATAAGCGTGGTAATGCATGAAAACATCTGCTGTTACATTAGCATATTGCATT
ATTTATTATGGCCCCAGTTAATACCATAAATAAAGACTTTTCTTTAACTACA

hide sequence

RefSeq Acc Id:

XM_017600496 ⟹ XP_017455985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,883 (-)	NCBI
Rnor_6.0	17	79,720,534 - 79,798,469 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGTCAAGCCGCTTCCGGCAGGGGAAACTCCTAGTTGCGGCTTCGCCCGGCTTGACAG
GCGCTGTCTCTGCGGGCACCGAGCTACACTCATCCCGCTCGGCCTCCCAATCGCGCCTCGGCCGCCGCCGTCCCGCTGCCCTTTTCTCAAGCCTTCCCTTCCCTATGTTCCGGGACCGGAGTACGGGA
AGCAAAGACCCTCTTGTCCAGTCCCCATCATGTCCGAAGTGACCAAAGAGCTGCTGGAGCTGGTGTGGGGCACCAAGAGCAGTCCCGGACTGTCGGACACCATCTTCTGCCGCTGGACGCAAGGGTTT
GTGTTTAGTGACTCAGAGGGATCTGCATTAGAGCAGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTTCTGTTTTCCTCCGAGAAGTCGTCCTGGCGGGA
TTGCTCAGAGGACGAGCAGAAGGAGCTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTGACAGCTCTGGATCATACTGCATGGTTTCATGGTTGAGAGGAAGGACGACTGAGGACGCCG
CTAGGATTTCTGGGAGTCCTGCACAGTCTAGTTGCCAAGTGGGACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAACTGTATCA
GAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTCTTGCTTTTTCTCTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAGAATTCAATTGAAGATGCAAA
CGAGCCTTTGATAGACCCTGTGTACGGGCATGGCAGCCAAAGCTTAATAAACCTCCTCCTGACGGGGCACGCGGTCTCTAACGTGTGGGATGGCGATAGAGAGTGCTCAGGAATGCAACTTCTCGGTA
TCCATGAACAAGCAACTGTAGGATTCTTAACACTAATGGAAGCTTTACGCTATTGTAAGGATATGGCTTTAGTTGCCCCTGAAGCGCCTTCGGAACAAGCCAGAAGAGTTTTTCAGACCTATGACCCA
GAAGATAATGGATTCATAGCCGACACACTTCTAGAGGATGTCATGAAAGCCTTGGACCTTGTTTCAGATCCCGAGTATATAAATCTCATGAAGAACAAATTGGATCCAGAAGGATTAGGAATCATATT
GTTGGGTCCATTTCTTCAAGAATTTTTTCCTGACCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTAATGTATGTGGAAGGGA
CTGCAGTGGTTATGGGTTTTGAAGACCCCATGCTACAGACAGACGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCGTACATTGAGTTACTGTGGACCACAGACCGCTCTCCTTCACTCAAC
TGAGTTGCCCGAGTATTAGTAAGGAAGATTGTCAAACCCGGTGTTGAAAGGGGGATTCATGACTGGCTACATGAAGCTAAACGCTGGTATTGTTGATTAACTGTAAATAACAATTAAAAACACATTTT
CAGTGTTTAAGATATGTTTAAATTATTTGTTCTAAAGCTTTATGTTAAAGGTTATCCTATTTTAATCCTTTCTGTGAAATTTACTAACAAAATTAAGCTTTAATTAAAGTTCATCTCTTCTGCAGTCA
GGTAATTGGTCGTTACCAGATTATAAACACAATATTATAGCATTTTTATAATGACATCAGTCACAAAAACCTGCCTGGAGTATCATTCCATTCATTTCATTTTACTGTAGTATTTTTAGCAGCCTCCA
TACCAAAATGCAAAGGTTAATTTTTGTTAATTTTTTTTTTCATTGCTTAAATCTGTTTTTCCATCACAAATACTAATAAATCACAAATTATTGGCCCTGATCCTTTGGTAACAAATTTGACACTAGCA
TGTTTACAAACAAATAAGAAAGGATAATATGTGGGAGCTTCTTTGTGTTCACAGGTGCACAGGGATGTGGTTTTACAGTGATGGGGGAAGAATGTGTTGGCTGGGTGGTCTTACACTGTCGCTGTGAC
TGTACCGCTCAATACACTTCTCCACCTTCATTCCTACAAGCCAGCTCTCTTGTATGTTTATAAGCGTGGTAATGCATGAAAACATCTGCTGTTACATTAGCATATTGCATTATTTATTATGGCCCCAG
TTAATACCATAAATAAAGACTTTTCTTTAACTACA

hide sequence

RefSeq Acc Id:

XM_039095545 ⟹ XP_038951473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,518,353 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,609,235 (-)	NCBI

RefSeq Acc Id:

XM_039095549 ⟹ XP_038951477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,996 (-)	NCBI
mRatBN7.2	17	75,545,286 - 75,623,882 (-)	NCBI

RefSeq Acc Id:

XM_063276246 ⟹ XP_063132316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,998 (-)	NCBI

RefSeq Acc Id:

XM_063276247 ⟹ XP_063132317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,532,997 (-)	NCBI

RefSeq Acc Id:

XM_063276248 ⟹ XP_063132318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,454,404 - 80,524,009 (-)	NCBI

RefSeq Acc Id:

XR_010058840

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,455,258 - 80,532,999 (-)	NCBI

RefSeq Acc Id:

XR_010058841

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,455,258 - 80,532,997 (-)	NCBI

RefSeq Acc Id:

XR_010058842

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	80,464,148 - 80,532,999 (-)	NCBI


Protein RefSeqs	NP_001099592	(Get FASTA)	NCBI Sequence Viewer
	XP_017455984	(Get FASTA)	NCBI Sequence Viewer
	XP_017455985	(Get FASTA)	NCBI Sequence Viewer
	XP_038951473	(Get FASTA)	NCBI Sequence Viewer
	XP_038951477	(Get FASTA)	NCBI Sequence Viewer
	XP_063132316	(Get FASTA)	NCBI Sequence Viewer
	XP_063132317	(Get FASTA)	NCBI Sequence Viewer
	XP_063132318	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78709	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022986
	ENSRNOP00000022986.5
	ENSRNOP00000107442

RefSeq Acc Id:

NP_001099592 ⟸ NM_001106122

- UniProtKB:

D3Z916 (UniProtKB/TrEMBL), A6JM32 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQS
SCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFL
TLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIADTLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHY
NGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:

XP_017455984 ⟸ XM_017600495

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKK
LLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQSSCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKG
IENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKIFAAYEEALFLVCKRLDTLCTDMALVA
PEAPSEQARRVFQTYDPEDNGFIADTLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTK
WPYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:

XP_017455985 ⟸ XM_017600496

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSEVTKELLELVWGTKSSPGLSDTIFCRWTQGFVFSDSEGSALEQFEGGPCAVIAPVQAFLLKK
LLFSSEKSSWRDCSEDEQKELLCHTLCDILESACDSSGSYCMVSWLRGRTTEDAARISGSPAQSSCQVGHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKG
IENIKNSIEDANEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQATVGFLTLMEALRYCKDMALVAPEAPSEQARRVFQTYDPEDNGFIADTLLEDVMKALDLVSDPEYINLMK
NKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN

hide sequence

Ensembl Acc Id:

ENSRNOP00000022986 ⟸ ENSRNOT00000022986

RefSeq Acc Id:	XP_038951477 ⟸ XM_039095549
- Peptide Label:	isoform X6

Protein Domains

Deubiquitinating enzyme MINDY-3/4 conserved

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z916-F1-model_v2	AlphaFold	D3Z916	1-444	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700590

Promoter ID:

EPDNEW_R11114

Type:

initiation region

Name:

Fam188a_1

Description:

family with sequence similarity 188, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	79,798,407 - 79,798,467	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-8626	BioCyc
Ensembl Genes	ENSRNOG00000016955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022986	ENTREZGENE
	ENSRNOT00000022986.6	UniProtKB/TrEMBL
	ENSRNOT00000154944	ENTREZGENE
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	DUF4205	UniProtKB/TrEMBL
	EF-hand-like_dom	UniProtKB/TrEMBL
	MINY3/4	UniProtKB/TrEMBL
KEGG Report	rno:291320	UniProtKB/TrEMBL
NCBI Gene	291320	ENTREZGENE
PANTHER	PTHR12473	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-3	UniProtKB/TrEMBL
Pfam	DUF4205	UniProtKB/TrEMBL
PhenoGen	Mindy3	PhenoGen
RatGTEx	ENSRNOG00000016955	RatGTEx
SMART	DUF4205	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A6JM32	ENTREZGENE, UniProtKB/TrEMBL
	D3Z916	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-12	Mindy3	MINDY lysine 48 deubiquitinase 3	Fam188a	family with sequence similarity 188, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-12	Fam188a	family with sequence similarity 188, member A	RGD1309605	similar to RIKEN cDNA 2310047O13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1309605	similar to RIKEN cDNA 2310047O13	RGD1309605_predicted	similar to RIKEN cDNA 2310047O13 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1309605_predicted	similar to RIKEN cDNA 2310047O13 (predicted)	LOC291320_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291320_predicted	similar to RIKEN cDNA 2310047O13 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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