Slc7a11 (solute carrier family 7 member 11) - Rat Genome Database

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Gene: Slc7a11 (solute carrier family 7 member 11) Rattus norvegicus
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Symbol: Slc7a11
Name: solute carrier family 7 member 11
RGD ID: 1309275
Description: Predicted to enable L-kynurenine transmembrane transporter activity and cystine:glutamate antiporter activity. Involved in lens fiber cell differentiation; response to nicotine; and response to oxidative stress. Predicted to be located in several cellular components, including astrocyte projection; brush border membrane; and cell surface. Orthologous to human SLC7A11 (solute carrier family 7 member 11); INTERACTS WITH (+)-schisandrin B; (R)-lipoic acid; (S)-AMPA.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cystine/glutamate transporter; LOC310392; solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11; solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Slc7a11Tn(sb-T2/Bart3)2.266Mcwi
Genetic Models: F344-Slc7a11Tn(sb-T2/Bart3)2.266Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82136,532,912 - 136,668,560 (-)NCBIGRCr8
mRatBN7.22134,382,002 - 134,517,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2133,963,107 - 134,517,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2141,015,140 - 141,089,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02139,127,676 - 139,201,998 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02133,756,818 - 133,831,146 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02139,453,774 - 139,528,479 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2139,453,774 - 139,528,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02158,930,294 - 159,004,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42139,241,142 - 139,317,101 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12139,198,359 - 139,266,947 (-)NCBI
Celera2128,949,395 - 129,023,474 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
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Evidence
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Reference
Notes
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Original Reference(s)
Slc7a11Rattongue squamous cell carcinoma severityISORGD:1319531151361157 RGD 
Object Symbol
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Evidence
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Reference
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Original Reference(s)
Slc7a11Ratcontact dermatitis  ISORGD:131953111554173CTD Direct Evidence: marker/mechanismCTDPMID:25724174
Slc7a11RatNeoplasm Metastasis  ISORGD:131953111554173CTD Direct Evidence: marker/mechanismCTDPMID:19015640
Object Symbol
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Original Reference(s)
Slc7a11RatHermansky-Pudlak syndrome  ISSRGD:131953213592920 MouseDO 
Slc7a11Ratplatelet storage pool deficiency  ISSRGD:131953213592920OMIM:185050MouseDO 

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Original Reference(s)
Slc7a11Rat(+)-dexrazoxane multiple interactionsISORGD:13195326480464Dexrazoxane inhibits the reaction [Cyclophosphamide results in decreased expression of SLC7A11 protein]CTDPMID:37690746
Slc7a11Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of SLC7A11 mRNA]CTDPMID:31150632
Slc7a11Rat(-)-alpha-phellandrene decreases expressionISORGD:13195316480464alpha phellandrene results in decreased expression of SLC7A11 mRNACTDPMID:25075043
Slc7a11Rat(-)-demecolcine increases expressionISORGD:13195316480464Demecolcine results in increased expression of SLC7A11 mRNACTDPMID:23649840
Slc7a11Rat(1->4)-beta-D-glucan multiple interactionsISORGD:13195326480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of SLC7A11 mRNACTDPMID:36331819
Slc7a11Rat(E)-thiamethoxam increases expressionISORGD:13195326480464Thiamethoxam results in increased expression of SLC7A11 mRNACTDPMID:33533595
Slc7a11Rat(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [methylmercuric chloride results in decreased expression of SLC7A11 protein]; Thioctic more ...CTDPMID:32061141
Slc7a11Rat(R,R,R)-alpha-tocopherol multiple interactionsISORGD:13195316480464[alpha-Tocopherol co-treated with Paraquat] results in increased expression of SLC7A11 mRNA; [alpha-Tocopherol co-treated with Paraquat] more ...CTDPMID:24530478
Slc7a11Rat(S)-AMPA multiple interactionsEXP 6480464alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid inhibits the reaction [Propofol results in decreased expression of SLC7A11 protein]CTDPMID:28663055
Slc7a11Rat(S)-ropivacaine multiple interactionsISORGD:13195316480464[Ropivacaine results in increased susceptibility to Cisplatin] which results in decreased expression of SLC7A11 protein; more ...CTDPMID:39053794
Slc7a11Rat(S)-ropivacaine decreases expressionISORGD:13195316480464Ropivacaine results in decreased expression of SLC7A11 proteinCTDPMID:36124980
Slc7a11Rat1,3-benzothiazole-2-thiol increases expressionISORGD:13195316480464captax results in increased expression of SLC7A11 mRNACTDPMID:24211530
Slc7a11Rat1,3-dichloropropan-2-ol decreases expressionISORGD:131953264804641,3-dichloro-2-propanol results in decreased expression of SLC7A11 proteinCTDPMID:35870111
Slc7a11Rat1,3-dichloropropan-2-ol decreases expressionISORGD:131953164804641,3-dichloro-2-propanol results in decreased expression of SLC7A11 proteinCTDPMID:35870111
Slc7a11Rat1,3-dichloropropan-2-ol multiple interactionsISORGD:13195316480464[Thiazoles binds to indoline] promotes the reaction [1,3-dichloro-2-propanol results in decreased expression of SLC7A11 protein]; more ...CTDPMID:35870111
Slc7a11Rat1-[2-(3,4-dichlorophenyl)ethyl]-4-methylpiperazine multiple interactionsISORGD:131953164804641-(2-(3,4-dichlorophenyl)ethyl)-4-methylpiperazine promotes the reaction [ochratoxin A results in decreased expression of SLC7A11 protein]CTDPMID:38896176
Slc7a11Rat1-[2-(3,4-dichlorophenyl)ethyl]-4-methylpiperazine decreases expressionISORGD:131953164804641-(2-(3,4-dichlorophenyl)ethyl)-4-methylpiperazine results in decreased expression of SLC7A11 proteinCTDPMID:38896176
Slc7a11Rat1-nitropyrene multiple interactionsISORGD:13195316480464CYP1B1 protein promotes the reaction [1-nitropyrene results in decreased expression of SLC7A11 protein]; ferrostatin-1 inhibits more ...CTDPMID:37993079
Slc7a11Rat1-nitropyrene decreases expressionISORGD:131953164804641-nitropyrene results in decreased expression of SLC7A11 proteinCTDPMID:37993079
Slc7a11Rat1-nitropyrene decreases expressionISORGD:131953264804641-nitropyrene results in decreased expression of SLC7A11 proteinCTDPMID:37993079

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Biological Process
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Original Reference(s)
Slc7a11Ratadult behavior acts_upstream_of_or_withinISORGD:13195321624291 PMID:29024663RGDPMID:29024663
Slc7a11Ratamino acid transmembrane transport involved_inIBACGD:CAL0000175765|FB:FBgn0002778|FB:FBgn0028425|MGI:1347355|MGI:1355323|MGI:1858261|MGI:1921337|PANTHER:PTN000208507|RGD:1309193|RGD:620639|SGD:S000001028|SGD:S000003287|UniProtKB:Q01650|UniProtKB:Q92536|UniProtKB:Q9UHI5|UniProtKB:Q9UM01|UniProtKB:Q9UPY5|WB:WBGene00000002|WB:WBGene000000041600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc7a11Ratamino acid transmembrane transport involved_inIEAARBA:ARBA000270911600115GO_REF:0000117UniProtGO_REF:0000117
Slc7a11Ratamino acid transport involved_inIEAUniProtKB-KW:KW-00291600115GO_REF:0000043UniProtGO_REF:0000043
Slc7a11Ratamino acid transport involved_inIEAInterPro:IPR0047601600115GO_REF:0000002InterProGO_REF:0000002
Slc7a11Ratbrain development acts_upstream_of_or_withinISORGD:13195321624291MGI:1857061 PMID:17035536RGDPMID:17035536
Slc7a11Ratcellular response to oxidative stress acts_upstream_of_or_withinISORGD:13195321624291MGI:1857061|MGI:3608695 PMID:17035536, PMID:23085521RGDPMID:17035536|PMID:23085521
Slc7a11Ratcellular response to stress acts_upstream_of_or_withinISORGD:13195321624291 PMID:29024663RGDPMID:29024663
Slc7a11Ratdipeptide import across plasma membrane acts_upstream_of_or_withinISORGD:13195321624291MGI:1857061 PMID:16037214RGDPMID:16037214
Slc7a11Ratglutathione metabolic process acts_upstream_of_or_withinISORGD:13195321624291MGI:3608695 PMID:17200146, PMID:23085521RGDPMID:17200146|PMID:23085521
Slc7a11Ratglutathione transmembrane transport acts_upstream_of_or_withinISORGD:13195321624291 PMID:17035536RGDPMID:17035536
Slc7a11Ratintracellular glutamate homeostasis acts_upstream_of_or_withinISORGD:13195321624291MGI:1351339|MGI:3608695 PMID:21191088, PMID:29024663RGDPMID:21191088|PMID:29024663
Slc7a11RatL-cystine transport involved_inISORGD:13195311624291 PMID:11133847, PMID:11213471, PMID:11417227, PMID:15151999, PMID:34880232, PMID:35352032RGDPMID:11133847|PMID:11213471|PMID:11417227|PMID:15151999|PMID:34880232|PMID:35352032
Slc7a11RatL-cystine transport involved_inISORGD:13195321624291 PMID:16037214RGDPMID:16037214
Slc7a11RatL-glutamate import across plasma membrane acts_upstream_of_or_withinISORGD:13195321624291MGI:3608695 PMID:21490221RGDPMID:21490221
Slc7a11RatL-glutamate transmembrane transport involved_inISORGD:13195311624291 PMID:11133847, PMID:11417227, PMID:15151999, PMID:34880232, PMID:35352032RGDPMID:11133847|PMID:11417227|PMID:15151999|PMID:34880232|PMID:35352032
Slc7a11RatL-kynurenine transmembrane transport involved_inISORGD:13195311624291 PMID:35245456RGDPMID:35245456
Slc7a11Ratlens fiber cell differentiation  IEP 2315033 RGD 
Slc7a11Ratlimb development acts_upstream_of_or_withinISORGD:13195321624291MGI:3608695 PMID:21490221RGDPMID:21490221
Slc7a11Ratlung alveolus development acts_upstream_of_or_withinISORGD:13195321624291MGI:3608695 PMID:23085521RGDPMID:23085521
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Cellular Component
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Original Reference(s)
Slc7a11Ratapical part of cell located_inISORGD:13195321624291 PMID:16399997RGDPMID:16399997
Slc7a11Ratastrocyte projection located_inISORGD:13195321624291 PMID:16399997RGDPMID:16399997
Slc7a11Ratbrush border membrane located_inISORGD:13195321624291 PMID:16399997RGDPMID:16399997
Slc7a11Ratcell surface located_inISORGD:13195311624291 PMID:25063885RGDPMID:25063885
Slc7a11Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc7a11Ratmembrane located_inISORGD:13195321624291 PMID:29350434RGDPMID:29350434
Slc7a11Ratmembrane located_inIEAInterPro:IPR002293|InterPro:IPR0047601600115GO_REF:0000002InterProGO_REF:0000002
Slc7a11Ratplasma membrane located_inISORGD:13195321624291 PMID:16399997RGDPMID:16399997
Slc7a11Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Slc7a11Ratplasma membrane located_inISORGD:13195311624291UniProtKB:P08195 PMID:11417227, PMID:15151999, PMID:34880232RGDPMID:11417227|PMID:15151999|PMID:34880232
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Molecular Function

  
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Original Reference(s)
Slc7a11Ratcystine:glutamate antiporter activity enablesISORGD:13195311624291 PMID:11417227, PMID:15151999, PMID:34120018, PMID:35245456, PMID:35352032RGDPMID:11417227|PMID:15151999|PMID:34120018|PMID:35245456|PMID:35352032
Slc7a11RatL-amino acid transmembrane transporter activity enablesIBAMGI:1298205|MGI:1355323|PANTHER:PTN000208507|SGD:S000001028|SGD:S000003287|UniProtKB:A0A3Q1NNN2|UniProtKB:P82251|UniProtKB:Q01650|UniProtKB:Q92536|UniProtKB:Q9UHI5|UniProtKB:Q9UPY51600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc7a11RatL-kynurenine transmembrane transporter activity enablesISORGD:13195311624291 PMID:35245456RGDPMID:35245456
Slc7a11Ratprotein binding enablesISORGD:13195311624291UniProtKB:P08195|UniProtKB:P08195-4|UniProtKB:P16070|UniProtKB:Q07627|UniProtKB:Q8IUG1 PMID:21397861, PMID:32296183, PMID:34880232RGDPMID:21397861|PMID:32296183|PMID:34880232
Slc7a11Rattransmembrane transporter activity enablesIEAInterPro:IPR0022931600115GO_REF:0000002InterProGO_REF:0000002


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Reference Title
Reference Citation
1. Expression of the cystine-glutamate exchanger (xc-) in retinal ganglion cells and regulation by nitric oxide and oxidative stress. Dun Y, etal., Cell Tissue Res. 2006 May;324(2):189-202. Epub 2006 Jan 28.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. The role of cystine-glutamate exchange in nicotine dependence in rats and humans. Knackstedt LA, etal., Biol Psychiatry. 2009 May 15;65(10):841-5. Epub 2008 Dec 21.
5. Expression and developmental regulation of the cystine/glutamate exchanger (xc-) in the rat. La Bella V, etal., Neurochem Res. 2007 Jun;32(6):1081-90. Epub 2007 Mar 31.
6. Molecular characterization of the cystine/glutamate exchanger and the excitatory amino acid transporters in the rat lens. Lim J, etal., Invest Ophthalmol Vis Sci. 2005 Aug;46(8):2869-77.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Prognostic significance of amino-acid transporter expression (LAT1, ASCT2, and xCT) in surgically resected tongue cancer. Toyoda M, etal., Br J Cancer. 2014 May 13;110(10):2506-13. doi: 10.1038/bjc.2014.178. Epub 2014 Apr 24.
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PMID:8699821   PMID:16037214   PMID:16144837   PMID:16399997   PMID:17035536   PMID:17200146   PMID:17575980   PMID:17963724   PMID:19017641   PMID:21191088   PMID:21490221   PMID:21639880  
PMID:22095285   PMID:23085521   PMID:23192314   PMID:24548853   PMID:24687412   PMID:24866234   PMID:25063885   PMID:25429150   PMID:26851652   PMID:27570548   PMID:29024663   PMID:29038291  
PMID:29045497   PMID:29350434   PMID:29488137   PMID:34259984   PMID:35786456   PMID:36456793   PMID:36929608   PMID:37146710   PMID:37391124   PMID:37603538   PMID:37691947   PMID:37822721  
PMID:38816686   PMID:39354361  



Slc7a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82136,532,912 - 136,668,560 (-)NCBIGRCr8
mRatBN7.22134,382,002 - 134,517,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2133,963,107 - 134,517,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2141,015,140 - 141,089,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02139,127,676 - 139,201,998 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02133,756,818 - 133,831,146 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02139,453,774 - 139,528,479 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2139,453,774 - 139,528,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02158,930,294 - 159,004,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42139,241,142 - 139,317,101 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12139,198,359 - 139,266,947 (-)NCBI
Celera2128,949,395 - 129,023,474 (-)NCBICelera
Cytogenetic Map2q26NCBI
SLC7A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384138,164,097 - 138,312,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4138,164,097 - 138,242,349 (-)EnsemblGRCh38hg38GRCh38
GRCh374139,085,251 - 139,163,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364139,304,698 - 139,382,953 (-)NCBINCBI36Build 36hg18NCBI36
Build 344139,449,092 - 139,520,828NCBI
Celera4136,424,509 - 136,502,906 (-)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4134,820,291 - 134,898,999 (-)NCBIHuRef
CHM1_14139,061,708 - 139,139,961 (-)NCBICHM1_1
T2T-CHM13v2.04141,487,564 - 141,636,430 (-)NCBIT2T-CHM13v2.0
Slc7a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39350,319,385 - 50,403,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl349,846,975 - 50,398,063 (-)EnsemblGRCm39 Ensembl
GRCm38350,364,936 - 50,499,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl349,892,526 - 50,443,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37350,168,858 - 50,247,535 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36350,461,131 - 50,539,808 (-)NCBIMGSCv36mm8
Celera350,149,206 - 50,227,932 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map321.72NCBI
Slc7a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554285,237,865 - 5,309,085 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554285,238,460 - 5,309,085 (+)NCBIChiLan1.0ChiLan1.0
SLC7A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23136,031,904 - 136,178,341 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14136,428,877 - 136,575,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04130,529,677 - 130,601,396 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14141,841,526 - 141,919,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4141,849,343 - 141,959,849 (-)Ensemblpanpan1.1panPan2
SLC7A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1194,289,792 - 4,379,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl194,289,850 - 4,389,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha194,539,704 - 4,608,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0194,364,717 - 4,454,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl194,264,457 - 4,464,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1194,293,544 - 4,361,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0194,655,537 - 4,724,650 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0195,019,875 - 5,088,260 (+)NCBIUU_Cfam_GSD_1.0
Slc7a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530151,740,115 - 51,806,268 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365359,177,143 - 9,242,566 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365359,177,305 - 9,242,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl888,608,174 - 88,687,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1888,608,083 - 88,690,589 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC7A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1785,149,810 - 85,225,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl785,154,068 - 85,225,144 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603764,647,689 - 64,726,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477718,546,799 - 18,619,947 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477718,540,006 - 18,619,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc7a11
751 total Variants

Predicted Target Of
Summary Value
Count of predictions:998
Count of miRNA genes:319
Interacting mature miRNAs:468
Transcripts:ENSRNOT00000014317
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat

1 to 10 of 57 rows
RH135019  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22134,443,162 - 134,443,349 (+)MAPPERmRatBN7.2
Rnor_6.02139,453,895 - 139,454,081NCBIRnor6.0
Rnor_5.02158,930,415 - 158,930,601UniSTSRnor5.0
RGSC_v3.42139,241,263 - 139,241,449UniSTSRGSC3.4
Celera2128,949,516 - 128,949,702UniSTS
RH 3.4 Map2822.8UniSTS
Cytogenetic Map2q26UniSTS


This gene Slc7a11 is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 36 113 84 83 52 25 52 6 193 83 93 41 60 31



Ensembl Acc Id: ENSRNOT00000014317   ⟹   ENSRNOP00000014317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2133,963,107 - 134,517,536 (-)Ensembl
Rnor_6.0 Ensembl2139,453,774 - 139,528,162 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114420   ⟹   ENSRNOP00000091221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2134,447,464 - 134,517,536 (-)Ensembl
RefSeq Acc Id: NM_001107673   ⟹   NP_001101143
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82136,593,952 - 136,668,264 (-)NCBI
mRatBN7.22134,443,042 - 134,517,358 (-)NCBI
Rnor_6.02139,453,774 - 139,528,162 (-)NCBI
Rnor_5.02158,930,294 - 159,004,937 (-)NCBI
RGSC_v3.42139,241,142 - 139,317,101 (-)RGD
Celera2128,949,395 - 129,023,474 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102258   ⟹   XP_038958186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82136,532,915 - 136,668,560 (-)NCBI
mRatBN7.22134,382,005 - 134,517,228 (-)NCBI
RefSeq Acc Id: XM_039102259   ⟹   XP_038958187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82136,601,293 - 136,668,560 (-)NCBI
mRatBN7.22134,451,766 - 134,517,228 (-)NCBI
RefSeq Acc Id: XM_039102260   ⟹   XP_038958188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82136,532,912 - 136,668,533 (-)NCBI
mRatBN7.22134,382,002 - 134,517,622 (-)NCBI
RefSeq Acc Id: XM_063281786   ⟹   XP_063137856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82136,593,952 - 136,668,533 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_001101143 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958186 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958188 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137856 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15001 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014317.5
  ENSRNOP00000091221
  ENSRNOP00000091221.1
  ENSRNOP00000098235
1 to 10 of 10 rows
RefSeq Acc Id: NP_001101143   ⟸   NM_001107673
- UniProtKB: D4ADU2 (UniProtKB/TrEMBL),   A0A8I6AB70 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014317   ⟸   ENSRNOT00000014317
RefSeq Acc Id: XP_038958188   ⟸   XM_039102260
- Peptide Label: isoform X3
- UniProtKB: D4ADU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958186   ⟸   XM_039102258
- Peptide Label: isoform X1
- UniProtKB: D4ADU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958187   ⟸   XM_039102259
- Peptide Label: isoform X2
- UniProtKB: D4ADU2 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-D4ADU2-F1-model_v2 AlphaFold D4ADU2 1-502 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-53144 BioCyc
Ensembl Genes ENSRNOG00000010210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014317.6 UniProtKB/TrEMBL
  ENSRNOT00000114420 ENTREZGENE
  ENSRNOT00000114420.1 UniProtKB/TrEMBL
  ENSRNOT00000120596 ENTREZGENE
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
  AminoAcid_Transporter UniProtKB/TrEMBL
  L_AA_transporter UniProtKB/TrEMBL
KEGG Report rno:310392 UniProtKB/TrEMBL
NCBI Gene 310392 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  CYSTINE/GLUTAMATE TRANSPORTER UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/TrEMBL
PharmGKB SLC7A11 RGD
PhenoGen Slc7a11 PhenoGen
PIRSF AA_transporter UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010210 RatGTEx
UniProt A0A8I6AB70 ENTREZGENE, UniProtKB/TrEMBL
  D4ADU2 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Slc7a11  solute carrier family 7 (cationic amino acid transporter, y+ system), member 11   Slc7a11_predicted  solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc7a11_predicted  solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED