Usp33 (ubiquitin specific peptidase 33) - Rat Genome Database

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Gene: Usp33 (ubiquitin specific peptidase 33) Rattus norvegicus
Analyze
Symbol: Usp33
Name: ubiquitin specific peptidase 33
RGD ID: 1307848
Description: Predicted to enable several functions, including cysteine-type peptidase activity; small GTPase binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including axon guidance; centrosome duplication; and protein stabilization. Predicted to be located in several cellular components, including centrosome; focal adhesion; and neuronal cell body. Orthologous to human USP33 (ubiquitin specific peptidase 33); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310960; ubiquitin carboxyl-terminal hydrolase 33; ubiquitin specific protease 33
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,938,958 - 243,988,424 (+)NCBIGRCr8
mRatBN7.22241,283,209 - 241,328,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,292,985 - 241,328,479 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2249,108,087 - 249,142,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,995,100 - 247,029,050 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,894,620 - 241,928,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,567,179 - 257,602,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,568,613 - 257,602,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,245,108 - 276,280,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,885,728 - 250,920,082 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12250,930,945 - 250,934,689 (+)NCBI
Celera2233,227,036 - 233,260,980 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11739384   PMID:12477932   PMID:17628004   PMID:17766394   PMID:19363159   PMID:19424180   PMID:19684588   PMID:19706539   PMID:21801292   PMID:23486064   PMID:24056301   PMID:27156111  


Genomics

Comparative Map Data
Usp33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,938,958 - 243,988,424 (+)NCBIGRCr8
mRatBN7.22241,283,209 - 241,328,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,292,985 - 241,328,479 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2249,108,087 - 249,142,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,995,100 - 247,029,050 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,894,620 - 241,928,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,567,179 - 257,602,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,568,613 - 257,602,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,245,108 - 276,280,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,885,728 - 250,920,082 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12250,930,945 - 250,934,689 (+)NCBI
Celera2233,227,036 - 233,260,980 (+)NCBICelera
Cytogenetic Map2q45NCBI
USP33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,695,987 - 77,759,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,695,987 - 77,759,852 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,161,672 - 78,225,537 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,934,260 - 77,998,125 (-)NCBINCBI36Build 36hg18NCBI36
Celera176,401,169 - 76,465,211 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,293,279 - 76,357,328 (-)NCBIHuRef
CHM1_1178,277,533 - 78,341,411 (-)NCBICHM1_1
T2T-CHM13v2.0177,534,817 - 77,598,662 (-)NCBIT2T-CHM13v2.0
Usp33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393152,051,797 - 152,099,254 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3152,052,115 - 152,099,254 (+)EnsemblGRCm39 Ensembl
GRCm383152,346,184 - 152,393,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,346,478 - 152,393,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv373152,009,445 - 152,056,581 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,283,875 - 152,330,627 (+)NCBIMGSCv36mm8
Celera3158,826,195 - 158,862,082 (+)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.15NCBI
Usp33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,423,932 - 15,469,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,424,349 - 15,469,344 (+)NCBIChiLan1.0ChiLan1.0
USP33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21149,127,761 - 149,193,612 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,290,531 - 148,356,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,914,795 - 76,980,639 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,999,339 - 79,065,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,999,339 - 79,065,082 (-)Ensemblpanpan1.1panPan2
USP33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1669,118,953 - 69,170,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl669,118,333 - 69,169,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,777,150 - 71,829,028 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,705,482 - 69,757,416 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,704,844 - 69,757,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1669,211,689 - 69,263,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0669,156,540 - 69,208,401 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,642,637 - 69,694,504 (+)NCBIUU_Cfam_GSD_1.0
Usp33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,027,107 - 89,089,995 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,537,405 - 4,588,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,537,461 - 4,600,238 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,524,395 - 135,589,730 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,524,372 - 135,589,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,758,886 - 125,797,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,412,608 - 55,487,665 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,412,635 - 55,487,750 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,039,422 - 62,109,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474219,450,246 - 19,501,341 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474219,450,217 - 19,506,169 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp33
114 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:371
Count of miRNA genes:206
Interacting mature miRNAs:247
Transcripts:ENSRNOT00000066125
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat

Markers in Region
RH125882  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,328,193 - 241,328,444 (+)MAPPERmRatBN7.2
Rnor_6.02257,602,532 - 257,602,782NCBIRnor6.0
Rnor_5.02276,280,530 - 276,280,780UniSTSRnor5.0
RGSC_v3.42250,919,797 - 250,920,047UniSTSRGSC3.4
Celera2233,260,695 - 233,260,945UniSTS
Cytogenetic Map2q45UniSTS
BE097837  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,325,402 - 241,325,555 (+)MAPPERmRatBN7.2
Rnor_6.02257,599,741 - 257,599,893NCBIRnor6.0
Rnor_5.02276,277,739 - 276,277,891UniSTSRnor5.0
RGSC_v3.42250,917,006 - 250,917,158UniSTSRGSC3.4
Celera2233,257,904 - 233,258,056UniSTS
RH 3.4 Map21651.02UniSTS
Cytogenetic Map2q45UniSTS
AI236710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,328,266 - 241,328,358 (+)MAPPERmRatBN7.2
Rnor_6.02257,602,605 - 257,602,696NCBIRnor6.0
Rnor_5.02276,280,603 - 276,280,694UniSTSRnor5.0
RGSC_v3.42250,919,870 - 250,919,961UniSTSRGSC3.4
Celera2233,260,768 - 233,260,859UniSTS
RH 3.4 Map21650.11UniSTS
Cytogenetic Map2q45UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 37 11 8
Low 1 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000066125   ⟹   ENSRNOP00000060372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,292,985 - 241,328,479 (+)Ensembl
Rnor_6.0 Ensembl2257,568,613 - 257,602,810 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096645   ⟹   ENSRNOP00000090528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,296,639 - 241,328,479 (+)Ensembl
RefSeq Acc Id: NM_001415063   ⟹   NP_001401992
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,943,210 - 243,988,424 (+)NCBI
mRatBN7.22241,283,257 - 241,328,479 (+)NCBI
RefSeq Acc Id: XM_039102497   ⟹   XP_038958425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,943,163 - 243,988,424 (+)NCBI
mRatBN7.22241,283,209 - 241,328,479 (+)NCBI
RefSeq Acc Id: XM_039102498   ⟹   XP_038958426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,943,163 - 243,983,421 (+)NCBI
mRatBN7.22241,283,209 - 241,322,157 (+)NCBI
RefSeq Acc Id: XM_063281989   ⟹   XP_063138059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,938,958 - 243,988,424 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001401992 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958425 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958426 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138059 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH92624 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060372
  ENSRNOP00000060372.3
  ENSRNOP00000090528.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000060372   ⟸   ENSRNOT00000066125
RefSeq Acc Id: XP_038958425   ⟸   XM_039102497
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AEH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958426   ⟸   XM_039102498
- Peptide Label: isoform X3
- UniProtKB: A6HWL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090528   ⟸   ENSRNOT00000096645
RefSeq Acc Id: NP_001401992   ⟸   NM_001415063
- UniProtKB: F1LPJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138059   ⟸   XM_063281989
- Peptide Label: isoform X1
- UniProtKB: F1LPJ7 (UniProtKB/TrEMBL)
Protein Domains
DUSP   UBP-type   USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LPJ7-F1-model_v2 AlphaFold F1LPJ7 1-909 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307848 AgrOrtholog
BioCyc Gene G2FUF-50800 BioCyc
Ensembl Genes ENSRNOG00000011294 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066125 ENTREZGENE
  ENSRNOT00000066125.4 UniProtKB/TrEMBL
  ENSRNOT00000096645.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2230.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/TrEMBL
  Pept_C19ubi-hydrolase_C_CS UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  UCH/PAN2 UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_UBP UniProtKB/TrEMBL
NCBI Gene 310960 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 33 UniProtKB/TrEMBL
Pfam DUF1055 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
  zf-UBP UniProtKB/TrEMBL
PhenoGen Usp33 PhenoGen
PROSITE DUSP UniProtKB/TrEMBL
  UCH_2_1 UniProtKB/TrEMBL
  UCH_2_2 UniProtKB/TrEMBL
  UCH_2_3 UniProtKB/TrEMBL
  ZF_UBP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011294 RatGTEx
SMART DUSP UniProtKB/TrEMBL
  ZnF_UBP UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF143791 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A8I6AEH4 ENTREZGENE, UniProtKB/TrEMBL
  A6HWL4 ENTREZGENE, UniProtKB/TrEMBL
  F1LPJ7 ENTREZGENE, UniProtKB/TrEMBL
  Q569A1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Usp33  ubiquitin specific peptidase 33    ubiquitin specific protease 33  Name updated 1299863 APPROVED
2005-12-06 Usp33  ubiquitin specific protease 33  Usp33_predicted  ubiquitin specific protease 33 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Usp33_predicted  ubiquitin specific protease 33 (predicted)      Symbol and Name status set to approved 70820 APPROVED