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Gene: Josd2 (Josephin domain containing 2) Rattus norvegicus

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Symbol:

Josd2

Name:

Josephin domain containing 2

RGD ID:

1307305

Description:

Predicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cytoplasm. Orthologous to human JOSD2 (Josephin domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Josephin-2; LOC292876; RGD1307305; similar to RIKEN cDNA 1110007C05

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JOSD2 (Josephin domain containing 2)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, PhylomeDB
Mus musculus (house mouse):	Josd2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Josd2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JOSD2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JOSD2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Josd2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JOSD2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	JOSD2 (Josephin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ABCA6 (ATP binding cassette subfamily A member 6)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Josd2 (Josephin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	JOSD2 (Josephin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	josd2 (Josephin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	josd-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3781	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	josd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,097,382 - 104,101,271 (+)	NCBI		GRCr8
mRatBN7.2	1	94,960,867 - 94,964,751 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	94,961,107 - 94,964,749 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	100,346,439 - 100,350,150 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	108,819,087 - 108,822,798 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	102,109,508 - 102,113,219 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	100,473,426 - 100,477,352 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	100,473,643 - 100,477,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	94,945,365 - 94,949,076 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	95,023,475 - 95,027,187 (+)	NCBI
Celera	1	89,223,704 - 89,227,415 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Josd2	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Josd2 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of JOSD2 mRNA	CTD	PMID:36331819
Josd2	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Josd2 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of JOSD2 mRNA	CTD	PMID:22206623
Josd2	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	Josd2 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
Josd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Josd2 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with AHR gene mutant form] results in decreased expression of JOSD2 mRNA	CTD	PMID:19465110
Josd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of JOSD2 mRNA	CTD	PMID:33387578
Josd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of JOSD2 mRNA	CTD	PMID:34747641
Josd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Josd2 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of JOSD2 mRNA	CTD	PMID:26290441
Josd2	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Josd2 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of JOSD2 mRNA	CTD	PMID:21570461 and PMID:24680724
Josd2	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of JOSD2 mRNA	CTD	PMID:21346803
Josd2	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of JOSD2 mRNA	CTD	PMID:24780913 and PMID:25825206
Josd2	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of JOSD2 mRNA	CTD	PMID:31881176
Josd2	Rat	Aflatoxin B2 alpha	increases methylation	ISO	JOSD2 (Homo sapiens)	6480464	aflatoxin B2 results in increased methylation of JOSD2 intron	CTD	PMID:30157460
Josd2	Rat	arsane	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	arsenic atom	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	arsenous acid	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to JOSD2 protein]	CTD	PMID:26598702
Josd2	Rat	benzo[a]pyrene	increases methylation	ISO	JOSD2 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of JOSD2 promoter	CTD	PMID:27901495
Josd2	Rat	benzo[a]pyrene	decreases methylation	ISO	Josd2 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of JOSD2 promoter	CTD	PMID:27901495
Josd2	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of JOSD2 mRNA	CTD	PMID:25181051 and PMID:30816183
Josd2	Rat	bisphenol A	decreases expression	ISO	Josd2 (Mus musculus)	6480464	bisphenol A results in decreased expression of JOSD2 mRNA	CTD	PMID:35598803
Josd2	Rat	bisphenol A	increases expression	ISO	Josd2 (Mus musculus)	6480464	bisphenol A results in increased expression of JOSD2 mRNA	CTD	PMID:33221593
Josd2	Rat	bisphenol F	decreases expression	ISO	Josd2 (Mus musculus)	6480464	bisphenol F results in decreased expression of JOSD2 mRNA	CTD	PMID:38685157
Josd2	Rat	cadmium dichloride	increases expression	ISO	JOSD2 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of JOSD2 mRNA	CTD	PMID:38568856
Josd2	Rat	chlorpyrifos	decreases expression	ISO	Josd2 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of JOSD2 mRNA	CTD	PMID:32715474
Josd2	Rat	chlorpyrifos	increases expression	ISO	Josd2 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of JOSD2 mRNA	CTD	PMID:37019170
Josd2	Rat	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of JOSD2 mRNA	CTD	PMID:24386269
Josd2	Rat	coumarin	increases expression	EXP		6480464	coumarin results in increased expression of JOSD2 mRNA	CTD	PMID:18480146
Josd2	Rat	cyclosporin A	increases expression	ISO	JOSD2 (Homo sapiens)	6480464	Cyclosporine results in increased expression of JOSD2 mRNA	CTD	PMID:20106945
Josd2	Rat	dextran sulfate	increases expression	ISO	Josd2 (Mus musculus)	6480464	Dextran Sulfate results in increased expression of JOSD2 mRNA	CTD	PMID:35093514
Josd2	Rat	diarsenic trioxide	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to JOSD2 protein]	CTD	PMID:26598702
Josd2	Rat	Dibutyl phosphate	affects expression	ISO	JOSD2 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of JOSD2 mRNA	CTD	PMID:37042841
Josd2	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of JOSD2 mRNA	CTD	PMID:24136188
Josd2	Rat	glafenine	increases expression	EXP		6480464	Glafenine results in increased expression of JOSD2 mRNA	CTD	PMID:24136188
Josd2	Rat	manganese atom	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	manganese(0)	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	manganese(II) chloride	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	nefazodone	increases expression	EXP		6480464	nefazodone results in increased expression of JOSD2 mRNA	CTD	PMID:24136188
Josd2	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of JOSD2 mRNA	CTD	PMID:25729387
Josd2	Rat	oxaliplatin	decreases expression	EXP		6480464	oxaliplatin results in decreased expression of JOSD2 mRNA	CTD	PMID:25729387
Josd2	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of JOSD2 mRNA	CTD	PMID:33387578
Josd2	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Josd2 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of JOSD2 mRNA and [perfluorooctane sulfonic acid co-treated with Pectins] results in increased expression of JOSD2 mRNA	CTD	PMID:36331819
Josd2	Rat	perfluorooctanoic acid	decreases expression	ISO	JOSD2 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of JOSD2 mRNA	CTD	PMID:36326898
Josd2	Rat	sodium arsenite	decreases expression	ISO	JOSD2 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of JOSD2 mRNA	CTD	PMID:34032870
Josd2	Rat	sodium arsenite	multiple interactions	ISO	JOSD2 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of JOSD2 mRNA	CTD	PMID:39836092
Josd2	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of JOSD2 mRNA	CTD	PMID:31150632
Josd2	Rat	tetrachloromethane	increases expression	ISO	Josd2 (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of JOSD2 mRNA	CTD	PMID:31919559
Josd2	Rat	topotecan	decreases expression	EXP		6480464	Topotecan results in decreased expression of JOSD2 mRNA	CTD	PMID:25729387
Josd2	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of JOSD2 mRNA	CTD	PMID:25729387
Josd2	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of JOSD2 mRNA	CTD	PMID:33387578
Josd2	Rat	triptonide	increases expression	ISO	Josd2 (Mus musculus)	6480464	triptonide results in increased expression of JOSD2 mRNA	CTD	PMID:33045310
Josd2	Rat	valproic acid	increases expression	ISO	Josd2 (Mus musculus)	6480464	Valproic Acid results in increased expression of JOSD2 mRNA	CTD	PMID:21427059
Josd2	Rat	valproic acid	increases expression	ISO	JOSD2 (Homo sapiens)	6480464	Valproic Acid results in increased expression of JOSD2 mRNA	CTD	PMID:37505509
Josd2	Rat	valproic acid	increases methylation	ISO	JOSD2 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of JOSD2 gene	CTD	PMID:29154799
Josd2	Rat	zinc atom	increases expression	ISO	JOSD2 (Homo sapiens)	6480464	Zinc results in increased expression of JOSD2 mRNA	CTD	PMID:19071009
Josd2	Rat	zinc(0)	increases expression	ISO	JOSD2 (Homo sapiens)	6480464	Zinc results in increased expression of JOSD2 mRNA	CTD	PMID:19071009

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Josd2	Rat	protein deubiquitination	involved_in	ISO	JOSD2 (Homo sapiens)	1624291	PMID:21118805	RGD	PMID:21118805
Josd2	Rat	protein deubiquitination	involved_in	IEA	UniProtKB:Q8TAC2 and ensembl:ENSP00000468956	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Josd2	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR006155	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Josd2	Rat	protein deubiquitination	acts_upstream_of_or_within	ISO	Josd2 (Mus musculus)	1624291	PMID:23625928	RGD	PMID:23625928
Josd2	Rat	protein deubiquitination	acts_upstream_of_or_within	IEA	UniProtKB:Q9CR30 and ensembl:ENSMUSP00000048415	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Josd2	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Josd2	Rat	cytoplasm	is_active_in	ISO	Josd2 (Mus musculus)	1624291	PMID:23625928	RGD	PMID:23625928
Josd2	Rat	cytoplasm	is_active_in	IEA	UniProtKB:Q9CR30 and ensembl:ENSMUSP00000048415	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Josd2	Rat	cysteine-type deubiquitinase activity	enables	ISO	JOSD2 (Homo sapiens)	1624291	PMID:21118805	RGD	PMID:21118805
Josd2	Rat	cysteine-type deubiquitinase activity	enables	IBA	PANTHER:PTN000328962 and UniProtKB:Q8TAC2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Josd2	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q8TAC2 and ensembl:ENSP00000468956	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Josd2	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR006155 and InterPro:IPR040053	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Josd2	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Josd2	Rat	deubiquitinase activity	enables	ISO	Josd2 (Mus musculus)	1624291	PMID:23625928	RGD	PMID:23625928
Josd2	Rat	deubiquitinase activity	enables	IEA	UniProtKB:Q9CR30 and ensembl:ENSMUSP00000048415	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Josd2	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Josd2	Rat	hydrolase activity	enables	IEA	UniRule:UR000400300	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Josd2	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Josd2	Rat	protein binding	enables	ISO	JOSD2 (Homo sapiens)	1624291	UniProtKB:O43865 more ...	RGD	PMID:28514442 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:15326124	PMID:21118805

Josd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,097,382 - 104,101,271 (+)	NCBI		GRCr8
mRatBN7.2	1	94,960,867 - 94,964,751 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	94,961,107 - 94,964,749 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	100,346,439 - 100,350,150 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	108,819,087 - 108,822,798 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	102,109,508 - 102,113,219 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	100,473,426 - 100,477,352 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	100,473,643 - 100,477,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	94,945,365 - 94,949,076 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	95,023,475 - 95,027,187 (+)	NCBI
Celera	1	89,223,704 - 89,227,415 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JOSD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	50,505,998 - 50,511,191 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	50,505,998 - 50,511,220 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	51,009,255 - 51,014,448 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	55,701,071 - 55,706,157 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	48,060,563 - 48,065,647 (-)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	47,345,979 - 47,351,343 (-)	NCBI		HuRef
CHM1_1	19	51,010,993 - 51,016,448 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	53,594,861 - 53,600,045 (-)	NCBI		T2T-CHM13v2.0

Josd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,117,404 - 44,121,082 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	44,117,404 - 44,121,086 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	44,467,980 - 44,471,658 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	44,467,980 - 44,471,662 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	51,723,426 - 51,727,021 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	44,336,098 - 44,339,693 (+)	NCBI		MGSCv36	mm8
MGSCv36	7	34,036,620 - 34,040,712 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	7	B3	NCBI
cM Map	7	28.83	NCBI

Josd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	655,178 - 659,412 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	655,178 - 659,412 (+)	NCBI	ChiLan1.0	ChiLan1.0

JOSD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	56,573,528 - 56,578,774 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	58,494,259 - 58,499,495 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	47,470,849 - 47,476,000 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	56,370,253 - 56,375,475 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	56,370,253 - 56,375,479 (-)	Ensembl	panpan1.1		panPan2

JOSD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	106,234,452 - 106,238,316 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	106,235,411 - 106,238,321 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	105,808,072 - 105,811,881 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	106,746,034 - 106,749,843 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	106,746,244 - 106,749,846 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	106,418,098 - 106,421,907 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	106,059,704 - 106,063,514 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	106,900,362 - 106,904,172 (+)	NCBI		UU_Cfam_GSD_1.0

Josd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	22,443,314 - 22,447,486 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936889	319,286 - 324,463 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936889	319,304 - 323,355 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JOSD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	55,334,419 - 55,340,288 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	55,335,466 - 55,341,019 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	51,174,381 - 51,189,993 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JOSD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	43,560,214 - 43,570,612 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	43,560,216 - 43,570,641 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	23,557,208 - 23,561,924 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in Josd2
2 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	126
Count of miRNA genes:	110
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000026379
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	85424647	100358001	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	94494440	117601394	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	90532338	123479925	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	83547917	128547917	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	92184926	137184926	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK842299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV214517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026379 ⟹ ENSRNOP00000026379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,961,107 - 94,964,744 (+)	Ensembl
Rnor_6.0 Ensembl	1	100,473,643 - 100,477,351 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100873 ⟹ ENSRNOP00000078316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,961,107 - 94,964,602 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110083 ⟹ ENSRNOP00000087491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,961,775 - 94,964,602 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118261 ⟹ ENSRNOP00000091200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,961,775 - 94,964,749 (+)	Ensembl

RefSeq Acc Id:

NM_001106256 ⟹ NP_001099726

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,560 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,961,038 - 94,964,749 (+)	NCBI
Rnor_6.0	1	100,473,643 - 100,477,352 (+)	NCBI
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI
RGSC_v3.4	1	94,945,365 - 94,949,076 (+)	RGD
Celera	1	89,223,704 - 89,227,415 (+)	RGD

Sequence:

show sequence

GCGCGCGCAAGTTGCCGGGAGCTGTAGTCCGTTCCGCCTGCTCAGTCAGCGTGGTACCACCCGAAAGCCGCCTAGGGAATGCGAAAGCGGCCGGTCCCAGGGAGCGGAAAGGCCGGCGGGCAGGAGCT
GAGGAGGGCATGTCTCAGGCGCCGGAAGCGAGACCAAGATCACCCTCAGTGTATCACGAGCGGCAGCGGCTAGAGCTGTGTGCCGTTCATGCTCTCAACAACGTCCTCCAAGAGCAGCTCTTTAGCCA
GGAAGCTGCCGACGAAATCTGCAAGAGGCTAGCCCCAGATTCCCGGCTGAACCCCCATCGCAGTCTCTTGGGCACCGGCAACTATGATGTCAACGTGATCATGGCTGCCCTGCAGGGCCTGGGCCTGG
CCGCTGTGTGGTGGGACAGGAGGAGACCCCTGTCCCAGCTGGTCCTGCCCCAGGTACTAGGCCTGATCTTGAACCTACCCTCTCCTGTGTCGCTGGGGCTGCTGTCCCTGCCGCTGCGCCGGCGACAC
TGGGTGGCCCTGCGCCAGGTGGACGGCATCTACTATAATCTGGACTCAAAGCTACGGGCACCTGAAGCCCTGGGGGGCGAGGATGGTGTCAGAGCCTTCCTGGCAGCTGCCTTGGCTCAAGGCCTGTG
CGAGGTGCTATTGGTGGTGACCAAGGAGGTGGAGGAGGCTGGCTGCTGGCTGCACACAAGCTGATGTACTGCCTGGGAAGGGTTGCCTGCTGCCGTTCCTGTGTCCAGTGCCTGAAAAGAACCTGTAA
CTTCAGGCCTCAGGAGGCCTGTCCTGCCCCAGTGTCCCCGCTCCCCTGACCACTGCTGCCTCAATAAATCTGCTCTTTTGTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006228996 ⟹ XP_006229058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,382 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,960,894 - 94,964,751 (+)	NCBI
Rnor_6.0	1	100,473,426 - 100,477,352 (+)	NCBI
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI

Sequence:

show sequence

CTCATACACAAACCAGCCCCCTGAAAGCTATCGCGAGATCATTGGTTACTACATCTCCCAGGAACCTCTAGGCAGCAGTGGGTCCTGAGAGAGAACCAGAAAGGGCTGCGCCGTCCGATGGGAGTTGT
AGTCCCATGTGGCAGAGCGGCCCCGGCGGACTTCCGGACTGAGCGTTCTATTTAGTCGCCCTACGGAGGCCTTCGGGAATCGCAGTCCGGCGCGCGCAAGTTGCCGGGAGCTGTAGTCCGTTCCGCCT
GCTCAGTCAGCGTGGTACCACCCGAAAGCCGCCTAGGGAATGCGAAAGCGGCCGGTCCCAGGGAGCGGAAAGGCCGGCGGGGCGACCAGAAGAGACCCTGTTACCCAGAGACGAGAAAGGAGGAGTCC
TCCATTGCTAGCAGGAGCTGAGGAGGGCATGTCTCAGGCGCCGGAAGCGAGACCAAGATCACCCTCAGTGTATCACGAGCGGCAGCGGCTAGAGCTGTGTGCCGTTCATGCTCTCAACAACGTCCTCC
AAGAGCAGCTCTTTAGCCAGGAAGCTGCCGACGAAATCTGCAAGAGGCTAGCCCCAGATTCCCGGCTGAACCCCCATCGCAGTCTCTTGGGCACCGGCAACTATGATGTCAACGTGATCATGGCTGCC
CTGCAGGGCCTGGGCCTGGCCGCTGTGTGGTGGGACAGGAGGAGACCCCTGTCCCAGCTGGTCCTGCCCCAGGTACTAGGCCTGATCTTGAACCTACCCTCTCCTGTGTCGCTGGGGCTGCTGTCCCT
GCCGCTGCGCCGGCGACACTGGGTGGCCCTGCGCCAGGTGGACGGCATCTACTATAATCTGGACTCAAAGCTACGGGCACCTGAAGCCCTGGGGGGCGAGGATGGTGTCAGAGCCTTCCTGGCAGCTG
CCTTGGCTCAAGGCCTGTGCGAGGTGCTATTGGTGGTGACCAAGGAGGTGGAGGAGGCTGGCTGCTGGCTGCACACAAGCTGATGTACTGCCTGGGAAGGGTTGCCTGCTGCCGTTCCTGTGTCCAGT
GCCTGAAAAGAACCTGTAACTTCAGGCCTCAGGAGGCCTGTCCTGCCCCAGTGTCCCCGCTCCCCTGACCACTGCTGCCTCAATAAATCTGCTCTTTTGTTA

hide sequence

RefSeq Acc Id:

XM_006228997 ⟹ XP_006229059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,389 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,960,895 - 94,964,751 (+)	NCBI
Rnor_6.0	1	100,473,426 - 100,477,352 (+)	NCBI
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI

Sequence:

show sequence

CTCATACACAAACCAGCCCCCTGAAAGCTATCGCGAGATCATTGGTTACTACATCTCCCAGGAACCTCTAGGCAGCAGTGGGTCCTGAGAGAGAACCAGAAAGGGCTGCGCCGTCCGATGGGAGTTGT
AGTCCCATGTGGCAGAGCGGCCCCGGCGGACTTCCGGACTGAGCGTTCTATTTAGTCGCCCTACGGAGGCCTTCGGGAATCGCAGTCCGGCGCGCGCAAGTTGCCGGGAGCTGTAGTCCGTTCCGCCT
GCTCAGTCAGCGTGGTACCACCCGAAAGCCGCCTAGGGAATGCGAAAGCGGCCGGTCCCAGGGAGCGGAAAGGCCGGCGGGGCGACCAGAAGAGACCCTGTTACCCAGAGACGAGAAAGGAGGAGTCC
TCCATTGCTAGGAGCTGAGGAGGGCATGTCTCAGGCGCCGGAAGCGAGACCAAGATCACCCTCAGTGTATCACGAGCGGCAGCGGCTAGAGCTGTGTGCCGTTCATGCTCTCAACAACGTCCTCCAAG
AGCAGCTCTTTAGCCAGGAAGCTGCCGACGAAATCTGCAAGAGGCTAGCCCCAGATTCCCGGCTGAACCCCCATCGCAGTCTCTTGGGCACCGGCAACTATGATGTCAACGTGATCATGGCTGCCCTG
CAGGGCCTGGGCCTGGCCGCTGTGTGGTGGGACAGGAGGAGACCCCTGTCCCAGCTGGTCCTGCCCCAGGTACTAGGCCTGATCTTGAACCTACCCTCTCCTGTGTCGCTGGGGCTGCTGTCCCTGCC
GCTGCGCCGGCGACACTGGGTGGCCCTGCGCCAGGTGGACGGCATCTACTATAATCTGGACTCAAAGCTACGGGCACCTGAAGCCCTGGGGGGCGAGGATGGTGTCAGAGCCTTCCTGGCAGCTGCCT
TGGCTCAAGGCCTGTGCGAGGTGCTATTGGTGGTGACCAAGGAGGTGGAGGAGGCTGGCTGCTGGCTGCACACAAGCTGATGTACTGCCTGGGAAGGGTTGCCTGCTGCCGTTCCTGTGTCCAGTGCC
TGAAAAGAACCTGTAACTTCAGGCCTCAGGAGGCCTGTCCTGCCCCAGTGTCCCCGCTCCCCTGACCACTGCTGCCTCAATAAATCTGCTCTTTTGTTA

hide sequence

RefSeq Acc Id:

XM_006228998 ⟹ XP_006229060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,434 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,960,902 - 94,964,751 (+)	NCBI
Rnor_6.0	1	100,473,426 - 100,477,352 (+)	NCBI
Rnor_5.0	1	101,538,824 - 101,542,739 (+)	NCBI

Sequence:

show sequence

CTCATACACAAACCAGCCCCCTGAAAGCTATCGCGAGATCATTGGTTACTACATCTCCCAGGAACCTCTAGGCAGCAGTGGGTCCTGAGAGAGAACCAGAAAGGGCTGCGCCGTCCGATGGGAGTTGT
AGTCCCATGTGGCAGAGCGGCCCCGGCGGACTTCCGGACTGAGCGTTCTATTTAGTCGCCCTACGGAGGCCTTCGGGAATCGCAGTCCGGCGCGCGCAAGTTGCCGGGAGCTGTAGTCCGTTCCGCCT
GCTCAGTCAGCGTGGTACCACCCGAAAGCCGCCTAGGGAATGCGAAAGCGGCCGGTCCCAGGGAGCGGAAAGGCCGGCGGGGAGCTGAGGAGGGCATGTCTCAGGCGCCGGAAGCGAGACCAAGATCA
CCCTCAGTGTATCACGAGCGGCAGCGGCTAGAGCTGTGTGCCGTTCATGCTCTCAACAACGTCCTCCAAGAGCAGCTCTTTAGCCAGGAAGCTGCCGACGAAATCTGCAAGAGGCTAGCCCCAGATTC
CCGGCTGAACCCCCATCGCAGTCTCTTGGGCACCGGCAACTATGATGTCAACGTGATCATGGCTGCCCTGCAGGGCCTGGGCCTGGCCGCTGTGTGGTGGGACAGGAGGAGACCCCTGTCCCAGCTGG
TCCTGCCCCAGGTACTAGGCCTGATCTTGAACCTACCCTCTCCTGTGTCGCTGGGGCTGCTGTCCCTGCCGCTGCGCCGGCGACACTGGGTGGCCCTGCGCCAGGTGGACGGCATCTACTATAATCTG
GACTCAAAGCTACGGGCACCTGAAGCCCTGGGGGGCGAGGATGGTGTCAGAGCCTTCCTGGCAGCTGCCTTGGCTCAAGGCCTGTGCGAGGTGCTATTGGTGGTGACCAAGGAGGTGGAGGAGGCTGG
CTGCTGGCTGCACACAAGCTGATGTACTGCCTGGGAAGGGTTGCCTGCTGCCGTTCCTGTGTCCAGTGCCTGAAAAGAACCTGTAACTTCAGGCCTCAGGAGGCCTGTCCTGCCCCAGTGTCCCCGCT
CCCCTGACCACTGCTGCCTCAATAAATCTGCTCTTTTGTTA

hide sequence

RefSeq Acc Id:

XM_039104786 ⟹ XP_038960714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,395 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,960,867 - 94,964,749 (+)	NCBI

RefSeq Acc Id:

XM_039104787 ⟹ XP_038960715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,098,349 - 104,101,271 (+)	NCBI
mRatBN7.2	1	94,961,830 - 94,964,751 (+)	NCBI

RefSeq Acc Id:

XM_063283926 ⟹ XP_063139996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,395 - 104,101,271 (+)	NCBI

RefSeq Acc Id:

XM_063283928 ⟹ XP_063139998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,395 - 104,101,271 (+)	NCBI

RefSeq Acc Id:

XM_063283931 ⟹ XP_063140001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,097,395 - 104,101,271 (+)	NCBI


Protein RefSeqs	NP_001099726	(Get FASTA)	NCBI Sequence Viewer
	XP_006229058	(Get FASTA)	NCBI Sequence Viewer
	XP_006229059	(Get FASTA)	NCBI Sequence Viewer
	XP_006229060	(Get FASTA)	NCBI Sequence Viewer
	XP_038960714	(Get FASTA)	NCBI Sequence Viewer
	XP_038960715	(Get FASTA)	NCBI Sequence Viewer
	XP_063139996	(Get FASTA)	NCBI Sequence Viewer
	XP_063139998	(Get FASTA)	NCBI Sequence Viewer
	XP_063140001	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07488	(Get FASTA)	NCBI Sequence Viewer
	EDM07489	(Get FASTA)	NCBI Sequence Viewer
	EDM07490	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026379
	ENSRNOP00000026379.5
	ENSRNOP00000078316.1
	ENSRNOP00000087491.1
	ENSRNOP00000091200
	ENSRNOP00000091200.1

RefSeq Acc Id:	NP_001099726 ⟸ NM_001106256
- UniProtKB:	A6JAP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQAPEARPRSPSVYHERQRLELCAVHALNNVLQEQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLVLPQVLGLILNLPSPVSLGLLSLPLRRRHWVA LRQVDGIYYNLDSKLRAPEALGGEDGVRAFLAAALAQGLCEVLLVVTKEVEEAGCWLHTS hide sequence

RefSeq Acc Id:	XP_006229058 ⟸ XM_006228996
- Peptide Label:	isoform X1
- UniProtKB:	D4AD44 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRKRPVPGSGKAGGATRRDPVTQRRERRSPPLLAGAEEGMSQAPEARPRSPSVYHERQRLELCA VHALNNVLQEQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLVLPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGGED GVRAFLAAALAQGLCEVLLVVTKEVEEAGCWLHTS hide sequence

RefSeq Acc Id:

XP_006229059 ⟸ XM_006228997

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRKRPVPGSGKAGGATRRDPVTQRRERRSPPLLGAEEGMSQAPEARPRSPSVYHERQRLELCAV
HALNNVLQEQLFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLVLPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGGEDG
VRAFLAAALAQGLCEVLLVVTKEVEEAGCWLHTS

hide sequence

RefSeq Acc Id:	XP_006229060 ⟸ XM_006228998
- Peptide Label:	isoform X3
- UniProtKB:	A6JAP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQAPEARPRSPSVYHERQRLELCAVHALNNVLQEQLFSQEAADEICKRLAPDSRLNPHRSLLG TGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLVLPQVLGLILNLPSPVSLGLLSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGGEDGVRAFLAAALAQGLCEVLLVVTKEVEEAGCWLHTS hide sequence

Ensembl Acc Id:

ENSRNOP00000026379 ⟸ ENSRNOT00000026379

Protein Domains

Josephin

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AD44-F1-model_v2	AlphaFold	D4AD44	1-188	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13689997

Promoter ID:

EPDNEW_R521

Type:

initiation region

Name:

Josd2_1

Description:

Josephin domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	100,473,666 - 100,473,726	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-59770	BioCyc
Ensembl Genes	ENSRNOG00000019442	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026379	ENTREZGENE
	ENSRNOT00000026379.6	UniProtKB/TrEMBL
	ENSRNOT00000100873.1	UniProtKB/TrEMBL
	ENSRNOT00000110083.1	UniProtKB/TrEMBL
	ENSRNOT00000118261	ENTREZGENE
	ENSRNOT00000118261.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.70.40	UniProtKB/TrEMBL
	S15/NS1, RNA-binding	UniProtKB/TrEMBL
InterPro	JOSD1/2	UniProtKB/TrEMBL
	Josephin	UniProtKB/TrEMBL
KEGG Report	rno:292876	UniProtKB/TrEMBL
NCBI Gene	292876	ENTREZGENE
PANTHER	JOSEPHIN-2	UniProtKB/TrEMBL
	PTHR13291	UniProtKB/TrEMBL
Pfam	Josephin	UniProtKB/TrEMBL
PhenoGen	Josd2	PhenoGen
PROSITE	JOSEPHIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019442	RatGTEx
SMART	Josephin	UniProtKB/TrEMBL
UniProt	A0A8I5ZKN3_RAT	UniProtKB/TrEMBL
	A0A8I6A4H0_RAT	UniProtKB/TrEMBL
	A0A8I6GJF0	ENTREZGENE, UniProtKB/TrEMBL
	A6JAP3	ENTREZGENE, UniProtKB/TrEMBL
	A6JAP7	ENTREZGENE, UniProtKB/TrEMBL
	D4AD44	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Josd2	Josephin domain containing 2	Josd2_predicted	Josephin domain containing 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Josd2_predicted	Josephin domain containing 2 (predicted)	RGD1307305_predicted	similar to RIKEN cDNA 1110007C05 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307305_predicted	similar to RIKEN cDNA 1110007C05 (predicted)	LOC292876_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC292876_predicted	similar to RIKEN cDNA 1110007C05 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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