Advanced Search (OLGA)

Gene: Usp16 (ubiquitin specific peptidase 16) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Usp16

Name:

ubiquitin specific peptidase 16

RGD ID:

1307192

Description:

Predicted to enable several functions, including peptidase activity; ribosomal small subunit binding activity; and transcription coactivator activity. Predicted to be involved in several processes, including monoubiquitinated protein deubiquitination; positive regulation of macromolecule biosynthetic process; and positive regulation of ribosome biogenesis. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP16 (ubiquitin specific peptidase 16); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; INTERACTS WITH (+)-schisandrin B; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

deubiquitinating enzyme 16; LOC288306; ubiquitin carboxyl-terminal hydrolase 16; ubiquitin specific protease 16; ubiquitin thioesterase 16; ubiquitin thiolesterase 16; ubiquitin-specific-processing protease 16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP16 (ubiquitin specific peptidase 16)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usp16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp16 (ubiquitin specific peptidase 16)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP16 (ubiquitin specific peptidase 16)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp16 (ubiquitin specific peptidase 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp16 (ubiquitin specific peptidase 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp16-45	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	40,166,651 - 40,196,792 (+)	NCBI		GRCr8
mRatBN7.2	11	26,681,359 - 26,711,313 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	26,681,414 - 26,710,539 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	35,379,429 - 35,408,496 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	28,079,674 - 28,108,749 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	27,268,609 - 27,297,684 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	27,101,213 - 27,130,345 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	27,101,227 - 27,130,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	30,726,656 - 30,755,793 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	27,204,766 - 27,233,883 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	27,204,765 - 27,233,883 (+)	NCBI
Celera	11	26,433,856 - 26,462,887 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp16	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USP16 mRNA]	CTD	PMID:31150632
Usp16	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Usp16 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of USP16 mRNA	CTD	PMID:22206623
Usp16	Rat	17alpha-ethynylestradiol	affects expression	ISO	Usp16 (Mus musculus)	6480464	Ethinyl Estradiol affects the expression of USP16 mRNA	CTD	PMID:17555576
Usp16	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Usp16 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of USP16 mRNA	CTD	PMID:21570461
Usp16	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of USP16 mRNA	CTD	PMID:21346803
Usp16	Rat	2-hydroxypropanoic acid	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of USP16 mRNA	CTD	PMID:30851411
Usp16	Rat	3-chloropropane-1,2-diol	increases expression	EXP		6480464	alpha-Chlorohydrin results in increased expression of USP16 protein	CTD	PMID:34915118
Usp16	Rat	3-hydroxyisovaleric acid	increases expression	EXP		6480464	beta-hydroxyisovaleric acid results in increased expression of USP16 mRNA	CTD	PMID:24124592
Usp16	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Usp16 (Mus musculus)	6480464	bisphenol S results in increased expression of USP16 mRNA	CTD	PMID:39298647
Usp16	Rat	aristolochic acid A	decreases expression	ISO	USP16 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of USP16 mRNA	CTD	PMID:33212167
Usp16	Rat	benzene	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Benzene results in decreased expression of USP16 mRNA	CTD	PMID:15929907
Usp16	Rat	benzo[a]pyrene	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of USP16 mRNA	CTD	PMID:22641617
Usp16	Rat	beta-lapachone	decreases expression	ISO	USP16 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of USP16 mRNA	CTD	PMID:38218311
Usp16	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of USP16 mRNA	CTD	PMID:33754040
Usp16	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of USP16 mRNA	CTD	PMID:25181051
Usp16	Rat	bisphenol A	decreases expression	ISO	USP16 (Homo sapiens)	6480464	bisphenol A results in decreased expression of USP16 mRNA	CTD	PMID:29275510
Usp16	Rat	cadmium dichloride	increases expression	ISO	USP16 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of USP16 mRNA	CTD	PMID:26472689
Usp16	Rat	CGP 52608	multiple interactions	ISO	USP16 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to USP16 gene]	CTD	PMID:28238834
Usp16	Rat	chlordecone	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Chlordecone results in decreased expression of USP16 mRNA	CTD	PMID:33711761
Usp16	Rat	chlorpyrifos	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of USP16 mRNA	CTD	PMID:37019170
Usp16	Rat	chromium(6+)	multiple interactions	ISO	USP16 (Homo sapiens)	6480464	[zinc chromate results in increased abundance of chromium hexavalent ion] which results in increased expression of USP16 mRNA	CTD	PMID:38479592
Usp16	Rat	copper(II) sulfate	increases expression	ISO	USP16 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of USP16 mRNA	CTD	PMID:19549813
Usp16	Rat	coumarin	affects phosphorylation	ISO	USP16 (Homo sapiens)	6480464	coumarin affects the phosphorylation of USP16 protein	CTD	PMID:35688186
Usp16	Rat	crocidolite asbestos	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of USP16 mRNA	CTD	PMID:29279043
Usp16	Rat	cyclosporin A	increases expression	ISO	USP16 (Homo sapiens)	6480464	Cyclosporine results in increased expression of USP16 mRNA	CTD	PMID:20106945 and PMID:25562108
Usp16	Rat	diazinon	affects expression	EXP		6480464	Diazinon affects the expression of USP16 mRNA	CTD	PMID:22546817
Usp16	Rat	Dibutyl phosphate	affects expression	ISO	USP16 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of USP16 mRNA	CTD	PMID:37042841
Usp16	Rat	dicrotophos	decreases expression	ISO	USP16 (Homo sapiens)	6480464	dicrotophos results in decreased expression of USP16 mRNA	CTD	PMID:28302478
Usp16	Rat	enzyme inhibitor	multiple interactions	ISO	USP16 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of USP16 protein	CTD	PMID:23301498
Usp16	Rat	esculetin	multiple interactions	EXP		6480464	esculetin inhibits the reaction [[Streptozocin co-treated with Dietary Fats] results in increased expression of USP16 mRNA] and esculetin inhibits the reaction [Dietary Fats results in increased expression of USP16 mRNA]	CTD	PMID:28946194
Usp16	Rat	FR900359	increases phosphorylation	ISO	USP16 (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of USP16 protein	CTD	PMID:37730182
Usp16	Rat	gold atom	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Gold results in decreased expression of USP16 mRNA	CTD	PMID:25523186
Usp16	Rat	gold(0)	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Gold results in decreased expression of USP16 mRNA	CTD	PMID:25523186
Usp16	Rat	hypochlorous acid	increases expression	ISO	Usp16 (Mus musculus)	6480464	Hypochlorous Acid results in increased expression of USP16 mRNA	CTD	PMID:19376150
Usp16	Rat	lead(0)	affects expression	ISO	USP16 (Homo sapiens)	6480464	Lead affects the expression of USP16 mRNA	CTD	PMID:28903495
Usp16	Rat	N-ethyl-N-nitrosourea	increases mutagenesis	ISO	Usp16 (Mus musculus)	6480464	Ethylnitrosourea results in increased mutagenesis of USP16 gene	CTD	PMID:27776689
Usp16	Rat	nickel dichloride	affects expression	EXP		6480464	nickel chloride affects the expression of USP16 mRNA	CTD	PMID:22546817
Usp16	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	USP16 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of USP16 mRNA	CTD	PMID:27153767
Usp16	Rat	piroxicam	increases expression	ISO	USP16 (Homo sapiens)	6480464	Piroxicam results in increased expression of USP16 mRNA	CTD	PMID:21858171
Usp16	Rat	propiconazole	increases expression	ISO	Usp16 (Mus musculus)	6480464	propiconazole results in increased expression of USP16 mRNA	CTD	PMID:21278054
Usp16	Rat	rac-lactic acid	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of USP16 mRNA	CTD	PMID:30851411
Usp16	Rat	resveratrol	multiple interactions	ISO	USP16 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of USP16 mRNA	CTD	PMID:23557933
Usp16	Rat	silver atom	increases expression	ISO	Usp16 (Mus musculus)	6480464	Silver results in increased expression of USP16 mRNA	CTD	PMID:27131904
Usp16	Rat	silver(0)	increases expression	ISO	Usp16 (Mus musculus)	6480464	Silver results in increased expression of USP16 mRNA	CTD	PMID:27131904
Usp16	Rat	sodium arsenite	increases expression	ISO	USP16 (Homo sapiens)	6480464	sodium arsenite results in increased expression of USP16 mRNA	CTD	PMID:38568856
Usp16	Rat	streptozocin	multiple interactions	EXP		6480464	[Streptozocin co-treated with Dietary Fats] results in increased expression of USP16 mRNA and esculetin inhibits the reaction [[Streptozocin co-treated with Dietary Fats] results in increased expression of USP16 mRNA]	CTD	PMID:28946194
Usp16	Rat	succimer	multiple interactions	ISO	USP16 (Homo sapiens)	6480464	[Succimer co-treated with Magnetite Nanoparticles] results in increased expression of USP16 mRNA	CTD	PMID:26378955
Usp16	Rat	testosterone	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Testosterone deficiency results in decreased expression of USP16 mRNA	CTD	PMID:33848595
Usp16	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of USP16 mRNA]	CTD	PMID:31150632
Usp16	Rat	tetrachloromethane	increases expression	ISO	Usp16 (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of USP16 mRNA	CTD	PMID:31919559
Usp16	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of USP16 mRNA	CTD	PMID:31150632
Usp16	Rat	thimerosal	increases expression	ISO	USP16 (Homo sapiens)	6480464	Thimerosal results in increased expression of USP16 mRNA	CTD	PMID:27188386
Usp16	Rat	thiram	increases expression	ISO	USP16 (Homo sapiens)	6480464	Thiram results in increased expression of USP16 mRNA	CTD	PMID:38568856
Usp16	Rat	titanium dioxide	decreases methylation	ISO	Usp16 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of USP16 promoter	CTD	PMID:35295148
Usp16	Rat	tungsten	decreases expression	ISO	Usp16 (Mus musculus)	6480464	Tungsten results in decreased expression of USP16 mRNA	CTD	PMID:30912803
Usp16	Rat	valproic acid	decreases expression	ISO	USP16 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of USP16 mRNA	CTD	PMID:23179753
Usp16	Rat	valproic acid	affects expression	ISO	USP16 (Homo sapiens)	6480464	Valproic Acid affects the expression of USP16 mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp16	Rat	biological_process		ND		1598407	10/2014: no relevant rat data	RGD
Usp16	Rat	cell division	involved_in	IEA	UniProtKB-KW:KW-0132	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	chromatin organization	involved_in	IEA	UniProtKB-KW:KW-0156	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	chromatin remodeling	involved_in	IEA	GO:0140950	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Usp16	Rat	DNA damage response	involved_in	ISO	USP16 (Homo sapiens)	1624291	PMID:20550933	RGD	PMID:20550933
Usp16	Rat	DNA damage response	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	DNA damage response	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	mitotic cell cycle	involved_in	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	mitotic nuclear division	involved_in	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	monoubiquitinated protein deubiquitination	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	monoubiquitinated protein deubiquitination	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	monoubiquitinated protein deubiquitination	involved_in	ISO	USP16 (Homo sapiens)	1624291	PMID:32129764	RGD	PMID:32129764
Usp16	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355	RGD	PMID:17914355
Usp16	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	positive regulation of DNA-templated transcription	involved_in	IBA	MGI:1921362 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp16	Rat	positive regulation of DNA-templated transcription	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	positive regulation of ribosome biogenesis	involved_in	ISO	USP16 (Homo sapiens)	1624291	PMID:32129764	RGD	PMID:32129764
Usp16	Rat	positive regulation of ribosome biogenesis	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	positive regulation of ribosome biogenesis	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISS	UniProtKB:Q99LG0	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q99LG0 and ensembl:ENSMUSP00000026710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	Usp16 (Mus musculus)	1624291	PMID:24034696	RGD	PMID:24034696
Usp16	Rat	positive regulation of translational elongation	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	positive regulation of translational elongation	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	positive regulation of translational elongation	involved_in	ISO	USP16 (Homo sapiens)	1624291	PMID:20550933	RGD	PMID:20550933
Usp16	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp16	Rat	protein homotetramerization	involved_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	protein homotetramerization	involved_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	protein homotetramerization	involved_in	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	protein homotetramerization	involved_in	ISO	USP16 (Homo sapiens)	1624291	UniProtKB:Q9Y5T5 and PMID:17914355	RGD	PMID:17914355
Usp16	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	regulation of cell cycle	involved_in	IEA	InterPro:IPR030849	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp16	Rat	regulation of gene expression	involved_in	IEA	InterPro:IPR030849	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp16	Rat	regulation of transcription by RNA polymerase II	involved_in	ISS	UniProtKB:Q99LG0	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q99LG0 and ensembl:ENSMUSP00000026710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	regulation of transcription by RNA polymerase II	involved_in	ISO	Usp16 (Mus musculus)	1624291	PMID:24034696	RGD	PMID:24034696

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp16	Rat	cytoplasm	is_active_in	ISO	USP16 (Homo sapiens)	1624291	PMID:32129764	RGD	PMID:32129764
Usp16	Rat	cytoplasm	is_active_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	cytoplasm	is_active_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	nucleus	located_in	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355	RGD	PMID:17914355
Usp16	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Usp16	Rat	nucleus	located_in	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	nucleus	located_in	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	nucleus	located_in	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp16	Rat	cysteine-type deubiquitinase activity	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp16	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Usp16	Rat	cysteine-type deubiquitinase activity	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355 and PMID:32129764	RGD	PMID:17914355 and PMID:32129764
Usp16	Rat	cysteine-type endopeptidase activity	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	cysteine-type endopeptidase activity	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	cysteine-type endopeptidase activity	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	cysteine-type endopeptidase activity	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355	RGD	PMID:17914355
Usp16	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	histone binding	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	histone binding	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	histone binding	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	histone binding	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355	RGD	PMID:17914355
Usp16	Rat	histone H2A deubiquitinase activity	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:20550933	RGD	PMID:20550933
Usp16	Rat	histone H2A deubiquitinase activity	enables	IEA	UniProtKB:Q99LG0 and ensembl:ENSMUSP00000026710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	histone H2A deubiquitinase activity	enables	ISO	Usp16 (Mus musculus)	1624291	PMID:24034696	RGD	PMID:24034696
Usp16	Rat	histone H2A deubiquitinase activity	enables	ISS	UniProtKB:Q99LG0	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	histone H2A deubiquitinase activity	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	histone H2A deubiquitinase activity	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp16	Rat	protein binding	enables	ISO	USP16 (Homo sapiens) and UniProtKB:Q9Y5T5-2	1624291	UniProtKB:Q8WXH2 and PMID:32814053	RGD	PMID:32814053
Usp16	Rat	protein binding	enables	ISO	Usp16 (Mus musculus)	1624291	UniProtKB:O70126 and PMID:24034696	RGD	PMID:24034696
Usp16	Rat	ribosomal small subunit binding	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:32129764	RGD	PMID:32129764
Usp16	Rat	ribosomal small subunit binding	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	ribosomal small subunit binding	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	transcription coactivator activity	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	transcription coactivator activity	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	transcription coactivator activity	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	transcription coactivator activity	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17914355	RGD	PMID:17914355
Usp16	Rat	ubiquitin binding	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	ubiquitin binding	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	ubiquitin binding	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	ubiquitin binding	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17512543	RGD	PMID:17512543
Usp16	Rat	zinc ion binding	enables	ISS	UniProtKB:Q9Y5T5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp16	Rat	zinc ion binding	enables	ISO	USP16 (Homo sapiens)	1624291	PMID:17512543	RGD	PMID:17512543
Usp16	Rat	zinc ion binding	enables	IEA	UniRule:UR000160894	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp16	Rat	zinc ion binding	enables	IEA	UniProtKB:Q9Y5T5 and ensembl:ENSP00000382858	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp16	Rat	zinc ion binding	enables	IEA	InterPro:IPR001607	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp16	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp16	Rat	ataxia telangiectasia-mutated (ATM) signaling pathway		ISO	USP16 (Homo sapiens)	8661242		RGD
Usp16	Rat	histone modification pathway		ISO	USP16 (Homo sapiens)	9479061		RGD

#	Reference Title	Reference Citation
1.	H2A-DUBbing the mammalian epigenome: expanding frontiers for histone H2A deubiquitinating enzymes in cell biology and physiology.	Belle JI and Nijnik A, Int J Biochem Cell Biol. 2014 May;50:161-74. doi: 10.1016/j.biocel.2014.03.004. Epub 2014 Mar 16.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Push back to respond better: regulatory inhibition of the DNA double-strand break response.	Panier S and Durocher D, Nat Rev Mol Cell Biol. 2013 Oct;14(10):661-72. doi: 10.1038/nrm3659. Epub 2013 Sep 4.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

PMID:8889548	PMID:12477932	PMID:17512543	PMID:17914355	PMID:20550933	PMID:24034696

Usp16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	40,166,651 - 40,196,792 (+)	NCBI		GRCr8
mRatBN7.2	11	26,681,359 - 26,711,313 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	26,681,414 - 26,710,539 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	35,379,429 - 35,408,496 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	28,079,674 - 28,108,749 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	27,268,609 - 27,297,684 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	27,101,213 - 27,130,345 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	27,101,227 - 27,130,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	30,726,656 - 30,755,793 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	27,204,766 - 27,233,883 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	27,204,765 - 27,233,883 (+)	NCBI
Celera	11	26,433,856 - 26,462,887 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

USP16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	29,024,668 - 29,054,488 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	29,024,629 - 29,054,488 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	30,396,989 - 30,426,809 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	29,318,809 - 29,348,680 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	29,318,808 - 29,348,676	NCBI
Celera	21	15,580,416 - 15,610,282 (+)	NCBI		Celera
Cytogenetic Map	21	q21.3	NCBI
HuRef	21	15,803,158 - 15,833,022 (+)	NCBI		HuRef
CHM1_1	21	29,959,294 - 29,989,158 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	27,388,120 - 27,417,933 (+)	NCBI		T2T-CHM13v2.0

Usp16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	87,251,833 - 87,280,403 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	87,251,591 - 87,280,405 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	87,454,985 - 87,483,515 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	87,454,703 - 87,483,517 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	87,455,230 - 87,483,760 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	87,344,252 - 87,372,711 (+)	NCBI		MGSCv36	mm8
Celera	16	87,647,825 - 87,678,084 (+)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	49.54	NCBI

Usp16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955407	28,375,246 - 28,413,279 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	25,205,924 - 25,238,276 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	20,065,075 - 20,096,751 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	15,455,805 - 15,487,853 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	28,843,680 - 28,876,267 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	28,843,749 - 28,876,267 (+)	Ensembl	panpan1.1		panPan2

USP16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	24,034,399 - 24,060,268 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	24,034,448 - 24,059,874 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	24,027,524 - 24,053,526 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	24,148,182 - 24,173,976 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	24,148,255 - 24,173,879 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	24,098,633 - 24,124,438 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	24,100,335 - 24,126,234 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	24,571,759 - 24,597,559 (+)	NCBI		UU_Cfam_GSD_1.0

Usp16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	24,478,812 - 24,504,012 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	12,964,122 - 12,989,152 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	12,963,811 - 12,989,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	192,376,881 - 192,406,468 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	192,376,850 - 192,406,474 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	202,679,050 - 202,708,992 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP16
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	63,170,677 - 63,201,257 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	63,170,979 - 63,201,445 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	5,755,732 - 5,786,317 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	17,006,175 - 17,028,952 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	17,005,020 - 17,029,220 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Usp16
157 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	20
Count of miRNA genes:	15
Interacting mature miRNAs:	18
Transcripts:	ENSRNOT00000002173
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	19456205	76331918	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	16472047	44285911	Rat

RH130565

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	26,710,291 - 26,710,506 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,130,094 - 27,130,308	NCBI	Rnor6.0
Rnor_5.0	11	30,755,542 - 30,755,756	UniSTS	Rnor5.0
RGSC_v3.4	11	27,233,632 - 27,233,846	UniSTS	RGSC3.4
Celera	11	26,462,636 - 26,462,850	UniSTS
RH 3.4 Map	11	134.9	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH133685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	26,710,581 - 26,710,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,130,384 - 27,130,563	NCBI	Rnor6.0
Rnor_5.0	11	30,755,832 - 30,756,011	UniSTS	Rnor5.0
RGSC_v3.4	11	27,233,922 - 27,234,101	UniSTS	RGSC3.4
Celera	11	26,462,926 - 26,463,105	UniSTS
RH 3.4 Map	11	123.8	UniSTS
Cytogenetic Map	11	q11	UniSTS

AI072090

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	40,196,270 - 40,196,563 (+)	Marker Load Pipeline
mRatBN7.2	11	26,710,021 - 26,710,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,129,824 - 27,130,116	NCBI	Rnor6.0
Rnor_5.0	11	30,755,272 - 30,755,564	UniSTS	Rnor5.0
RGSC_v3.4	11	27,233,362 - 27,233,654	UniSTS	RGSC3.4
Celera	11	26,462,366 - 26,462,658	UniSTS
RH 3.4 Map	11	140.4	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH137401

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	26,705,609 - 26,705,814 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,125,412 - 27,125,616	NCBI	Rnor6.0
Rnor_5.0	11	30,750,860 - 30,751,064	UniSTS	Rnor5.0
RGSC_v3.4	11	27,228,950 - 27,229,154	UniSTS	RGSC3.4
Celera	11	26,457,953 - 26,458,157	UniSTS
RH 3.4 Map	11	136.7	UniSTS
Cytogenetic Map	11	q11	UniSTS

Usp16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	26,704,647 - 26,704,899 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,124,450 - 27,124,701	NCBI	Rnor6.0
Rnor_5.0	11	30,749,898 - 30,750,149	UniSTS	Rnor5.0
RGSC_v3.4	11	27,227,988 - 27,228,239	UniSTS	RGSC3.4
Celera	11	26,456,991 - 26,457,242	UniSTS
Cytogenetic Map	11	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001100501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC112386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI282215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ205918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV112036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002173 ⟹ ENSRNOP00000002173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	26,681,414 - 26,710,539 (+)	Ensembl
Rnor_6.0 Ensembl	11	27,101,227 - 27,130,341 (+)	Ensembl

RefSeq Acc Id:

NM_001100501 ⟹ NP_001093971

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,167,666 - 40,196,792 (+)	NCBI
mRatBN7.2	11	26,681,414 - 26,710,543 (+)	NCBI
Rnor_6.0	11	27,101,227 - 27,130,345 (+)	NCBI
Rnor_5.0	11	30,726,656 - 30,755,793 (+)	NCBI
RGSC_v3.4	11	27,204,766 - 27,233,883 (+)	RGD
Celera	11	26,433,856 - 26,462,887 (+)	RGD

Sequence:

show sequence

TGGTTCCACCGCGTCGCTCTCTATTCGTCACCTGGAGGAAGCGGAGCTGGCGGCCGGCTCCGGGCCCGTCGCGGGAGGCAGTTATGGGCGCCGTCTCACCGGATTGTAATTTTGTGTCAGTGAGCATT
CCATAAAGTGCCAACATGGGAAAGAAACGAACAAAGGGGAAAAGTGTTCCAGAAAAGGCTTCTTCTGAATCTACAGAACCAATGTGCAGACACCTTAGAAAAGGGTTGGAACAAGGTAATTTGAAAAA
AGCTTTGGTAAATGTGGAATGGAATATCTGCCAAGACTGTAAGACTGACAATAAAGTGAAAGATAAATCTGAGGAAGAAGCAGAAGACCCTTCGGTTTGGCTGTGTCTTAAATGTGGCCATCAGGGCT
GTGGCAGAGATTCCCAGGAGCAGCATGCCCTGAAGCACTACACAACACCAAGGTCTGAACCTCACTACCTGGTGCTTAGTTTGGACAACTGGAGCGTCTGGTGTTACAAGTGTGATGAGGAAATCAAG
TACTGCAGTTCAAACCGGCTGGGCCAAGTGGTTGATTATGTTAGAAAGCAAGCTGGCAGAATAACTTCAAAACCAGAGAAAAATAATGGACACATTGAGCTTGAAAATAAAAAATTGGAGAAAGAGAG
TAAAAATGAACAAGAGAGAGAAAAATCGGAAAGCATGGCTAAAGAAAACATCCCCTTGGACTCTGCTTCCCAGATAACGGTGAAAGGACTCAGCAACTTGGGGAATACTTGTTTCTTCAACGCTGTTA
TGCAGAACTTGTCACAAACGCCAGTGCTTAGAGAACTACTAAAAGAAGTGAAGATGTCTGGAACAATTGTAAAAATAGAGCCACCTGATCTGGCACTCACAGAACCTTTAGAAGTAAACCTTGAACCT
CCAGGTCCTCTTACTTTAGCCATGAGCCAGTTTCTTAATGAGATGCAAGAGAACAAAAAACGAATTGTAACACCTAAAGAGCTCTTTTCTCAGGTCTGTAAAAAAGCAACACGTTTTAAAGGGTACCA
ACAACAAGACAGCCAGGAGCTGCTTCGCTACCTATTGGACGGGATGAGAGCGGAAGAGCACCAAAGAGTGAGTAAAGGAATTCTTAAAGCATTTGGTAATTCTACTGAAAAATTGGATGAAGAAGTAA
AAAATAAAGTTAAAGATTATGAAAAGAAAAAGGCAATCCCAAGTTTTGTGGACCGCATCTTCGGTGGCGAACTGACTAGTACAATCATGTGTGATGACTGCAGGACTGTCTCCTTGGTGCATGAGTCT
TTCCTTGATTTGTCTCTCCCAGTTTTAGATGATCAGAGTGGTAAGAAAAATATAAATGATAAAAATGTGAAGAAGACAATGGAGGAAGAAGATAAAGACAGTGAGGAAGAGAAAGATGACAGCTACAT
GAAAACACGGAGTGACGTGCCCTCAGGAACAAGCAAGCACACACAGAAGAAAGCAAAGAAGCAAGCCAAAAAGCAAGCCAAGAACCAACGAAGGCAACAAAAAATTCAAGAAAGGTTTCTTCACTTCA
ACGAGATCTGCACCACTAACTACACTGAAGACAATGACCATGAAGCTGAGACGGCACTTCCGGGAGAAGGGGAAGTGGATACTGAGTTCAACCGTGGCTCTCAAGAGGAGCTCACACAGACAGAGCTC
TGTGCTAATCAGAAAGATGTGAATGGCCAAGAGGAAATGATAGAAAGCGCTGCCGATGAGCGGAAATGCCCAGAGCACCCGGAGGTGAAAAGTGTCAGCACCGAGAGTGATCTGGGGAGTTTGACTTC
TGCTCCTGAGTGTCCTAGAGATTTAAATGGTGCCTTCCTGGAAGAAAGGACCAGTGGAGAGCTAGACATTACCAATGGTTTAAAAAACCTTACTTTGAATGCTGCTGTTGATCCTGATGAAATAAGTA
TAGAGATTCTGAATGACAGCCATTCTCCTGCGTTAAAGGTGTATGAGGTCATGAATGAGGACCCAGAAACTGCTTTCTGTACCCTTGCAAACCGGGAAGCTTTTAGTACTGATGAGTGTTCAATCCAA
CATTGTTTGTATCAGTTCACCCGCAATGAGAAACTTCAAGATGCAAATAAACTGCTTTGTGAAGTGTGCACAAGACGGCAGTGTAATGGACCAAAGGCAAATATAAAAGGTGAAAGGAAACATGTTTA
CACCAATGCCAAGAAGCAGATGCTGGTTTCCCTTGCTCCTCCTGTACTCACTCTTCATTTAAAGAGATTTCAGCAGGCTGGTTTTAACCTACGCAAAGTTAACAAACACATAAAGTTTCCGGAAATCT
TAGATTTGGCTCCTTTTTGTACCCTTAAATGTAAGAACGTTGCTGAGGAAAGTACAAGAGTGCTGTATTCCTTATATGGAGTTGTGGAACACAGTGGCACTATGAGGTCAGGGCATTACACTGCCTAC
GCAAAGGAAAGAACTGCAAGCTGTCATCTCTCTAATCTTGTTCTTCATGGTGACATTCCGCAAGATTGTGAAATGGAGTCAACCAAAGGGCAGTGGTTTCACATCAGCGACACACACGTGCAAGCGGT
GCCTATAACTAAAGTACTGAACTCACAAGCTTATCTCCTATTTTATGAGAGAATACTGTGATGACAAGAAGTGTTTTCTCTGGAAATACGCCTATGGCTTTTATACTGGCTATTATAACAATAAAAAG
TTAAACTATAAATTATGTTCACCTAAGTAAATGACAGAAAAAAATCATGTTTATTTAAATACAGACAAAATTAACTTACAGCAGTTTTTGTATTAGCATACTGGTTTTTACTCTTTCTAGTTTCAACT
TTAGGAAAGATTTGAATAACTAAACTGACTGGGTGGTAGTTCTTGACACATCAATAAAGTGATATTCCCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248015 ⟹ XP_006248077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,167,630 - 40,196,603 (+)	NCBI
mRatBN7.2	11	26,681,359 - 26,711,313 (+)	NCBI
Rnor_6.0	11	27,101,214 - 27,130,345 (+)	NCBI
Rnor_5.0	11	30,726,656 - 30,755,793 (+)	NCBI

Sequence:

show sequence

CCTGGAGGGTGACTGGTTCCACCGCGTCGCTCTCTATTCGTCACCTGGAGGAAGCGGAGCTGGCGGCCGGCTCCGGGCCCGTCGCGGGAGGCAGTTATGGGCGCCGTCTCACCGGATTGTAATTTTGT
GTCAGTGAGCATTCCATAAAGTGCCAACATGGGAAAGAAACGAACAAAGGGGAAAAGTGTTCCAGAAAAGGCTTCTTCTGAATCTACAGAACCAATGTGCAGACACCTTAGAAAAGGGTTGGAACAAG
GTAATTTGAAAAAAGCTTTGGTAAATGTGGAATGGAATATCTGCCAAGACTGTAAGACTGACAATAAAGTGAAAGATAAATCTGAGGAAGAAGCAGAAGACCCTTCGGTTTGGCTGTGTCTTAAATGT
GGCCATCAGGGCTGTGGCAGAGATTCCCAGGAGCAGCATGCCCTGAAGCACTACACAACACCAAGGTCTGAACCTCACTACCTGGTGCTTAGTTTGGACAACTGGAGCGTCTGGTGTTACAAGTGTGA
TGAGGAAATCAAGTACTGCAGTTCAAACCGGCTGGGCCAAGTGGTTGATTATGTTAGAAAGCAAGCTGGCAGAATAACTTCAAAACCAGCAGAGAAAAATAATGGACACATTGAGCTTGAAAATAAAA
AATTGGAGAAAGAGAGTAAAAATGAACAAGAGAGAGAAAAATCGGAAAGCATGGCTAAAGAAAACATCCCCTTGGACTCTGCTTCCCAGATAACGGTGAAAGGACTCAGCAACTTGGGGAATACTTGT
TTCTTCAACGCTGTTATGCAGAACTTGTCACAAACGCCAGTGCTTAGAGAACTACTAAAAGAAGTGAAGATGTCTGGAACAATTGTAAAAATAGAGCCACCTGATCTGGCACTCACAGAACCTTTAGA
AGTAAACCTTGAACCTCCAGGTCCTCTTACTTTAGCCATGAGCCAGTTTCTTAATGAGATGCAAGAGAACAAAAAACGAATTGTAACACCTAAAGAGCTCTTTTCTCAGGTCTGTAAAAAAGCAACAC
GTTTTAAAGGGTACCAACAACAAGACAGCCAGGAGCTGCTTCGCTACCTATTGGACGGGATGAGAGCGGAAGAGCACCAAAGAGTGAGTAAAGGAATTCTTAAAGCATTTGGTAATTCTACTGAAAAA
TTGGATGAAGAAGTAAAAAATAAAGTTAAAGATTATGAAAAGAAAAAGGCAATCCCAAGTTTTGTGGACCGCATCTTCGGTGGCGAACTGACTAGTACAATCATGTGTGATGACTGCAGGACTGTCTC
CTTGGTGCATGAGTCTTTCCTTGATTTGTCTCTCCCAGTTTTAGATGATCAGAGTGGTAAGAAAAATATAAATGATAAAAATGTGAAGAAGACAATGGAGGAAGAAGATAAAGACAGTGAGGAAGAGA
AAGATGACAGCTACATGAAAACACGGAGTGACGTGCCCTCAGGAACAAGCAAGCACACACAGAAGAAAGCAAAGAAGCAAGCCAAAAAGCAAGCCAAGAACCAACGAAGGCAACAAAAAATTCAAGAA
AGGTTTCTTCACTTCAACGAGATCTGCACCACTAACTACACTGAAGACAATGACCATGAAGCTGAGACGGCACTTCCGGGAGAAGGGGAAGTGGATACTGAGTTCAACCGTGGCTCTCAAGAGGAGCT
CACACAGACAGAGCTCTGTGCTAATCAGAAAGATGTGAATGGCCAAGAGGAAATGATAGAAAGCGCTGCCGATGAGCGGAAATGCCCAGAGCACCCGGAGGTGAAAAGTGTCAGCACCGAGAGTGATC
TGGGGAGTTTGACTTCTGCTCCTGAGTGTCCTAGAGATTTAAATGGTGCCTTCCTGGAAGAAAGGACCAGTGGAGAGCTAGACATTACCAATGGTTTAAAAAACCTTACTTTGAATGCTGCTGTTGAT
CCTGATGAAATAAGTATAGAGATTCTGAATGACAGCCATTCTCCTGCGTTAAAGGTGTATGAGGTCATGAATGAGGACCCAGAAACTGCTTTCTGTACCCTTGCAAACCGGGAAGCTTTTAGTACTGA
TGAGTGTTCAATCCAACATTGTTTGTATCAGTTCACCCGCAATGAGAAACTTCAAGATGCAAATAAACTGCTTTGTGAAGTGTGCACAAGACGGCAGTGTAATGGACCAAAGGCAAATATAAAAGGTG
AAAGGAAACATGTTTACACCAATGCCAAGAAGCAGATGCTGGTTTCCCTTGCTCCTCCTGTACTCACTCTTCATTTAAAGAGATTTCAGCAGGCTGGTTTTAACCTACGCAAAGTTAACAAACACATA
AAGTTTCCGGAAATCTTAGATTTGGCTCCTTTTTGTACCCTTAAATGTAAGAACGTTGCTGAGGAAAGTACAAGAGTGCTGTATTCCTTATATGGAGTTGTGGAACACAGTGGCACTATGAGGTCAGG
GCATTACACTGCCTACGCAAAGGAAAGAACTGCAAGCTGTCATCTCTCTAATCTTGTTCTTCATGGTGACATTCCGCAAGATTGTGAAATGGAGTCAACCAAAGGGCAGTGGTTTCACATCAGCGACA
CACACGTGCAAGCGGTGCCTATAACTAAAGTACTGAACTCACAAGCTTATCTCCTATTTTATGAGAGAATACTGTGATGACAAGAAGTGTTTTCTCTGGAAATACGCCTATGGCTTTTATACTGGCTA
TTATAACAATAAAAAGTTAAACTATAAATTATGTTCACCTAAGTAAATGACAGAAAAAAATCATGTTTATTTAAATACAGACAAAATTAACTTACAGCAGTTTTTGTATTAGCATACTGGTTTTTACT
CTTTCTAGTTTCAACTTTAGGAAAGATTTGAATAACTAAACTGACTGGGTGGTAGTTCTTGACACATCAATAAAGTGATATTCCCAAAA

hide sequence

RefSeq Acc Id:

XM_063270433 ⟹ XP_063126503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,166,651 - 40,196,603 (+)	NCBI

RefSeq Acc Id:

XM_063270434 ⟹ XP_063126504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,166,651 - 40,196,603 (+)	NCBI

RefSeq Acc Id:

XM_063270435 ⟹ XP_063126505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,183,306 - 40,196,603 (+)	NCBI

RefSeq Acc Id:

XR_010055944

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,167,627 - 40,196,203 (+)	NCBI


Protein RefSeqs	NP_001093971	(Get FASTA)	NCBI Sequence Viewer
	XP_006248077	(Get FASTA)	NCBI Sequence Viewer
	XP_063126503	(Get FASTA)	NCBI Sequence Viewer
	XP_063126504	(Get FASTA)	NCBI Sequence Viewer
	XP_063126505	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI12387	(Get FASTA)	NCBI Sequence Viewer
	EDM10641	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002173
	ENSRNOP00000002173.5
GenBank Protein	Q2KJ09	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001093971 ⟸ NM_001100501

- UniProtKB:

Q2KJ09 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGKKRTKGKSVPEKASSESTEPMCRHLRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEEAEDPSVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCDEEIKYCSSN
RLGQVVDYVRKQAGRITSKPEKNNGHIELENKKLEKESKNEQEREKSESMAKENIPLDSASQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEVNLEPPGPLT
LAMSQFLNEMQENKKRIVTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDDCRTVSLVHESFLDLS
LPVLDDQSGKKNINDKNVKKTMEEEDKDSEEEKDDSYMKTRSDVPSGTSKHTQKKAKKQAKKQAKNQRRQQKIQERFLHFNEICTTNYTEDNDHEAETALPGEGEVDTEFNRGSQEELTQTELCANQK
DVNGQEEMIESAADERKCPEHPEVKSVSTESDLGSLTSAPECPRDLNGAFLEERTSGELDITNGLKNLTLNAAVDPDEISIEILNDSHSPALKVYEVMNEDPETAFCTLANREAFSTDECSIQHCLYQ
FTRNEKLQDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERT
ASCHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYERIL

hide sequence

RefSeq Acc Id:	XP_006248077 ⟸ XM_006248015
- Peptide Label:	isoform X3
- UniProtKB:	Q2KJ09 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKKRTKGKSVPEKASSESTEPMCRHLRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEE AEDPSVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCDEEIKYCSSNRLGQVVDYVRKQAGRITSKPAEKNNGHIELENKKLEKESKNEQEREKSESMAKENIPLDSASQI TVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEVNLEPPGPLTLAMSQFLNEMQENKKRIVTPKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRAEEHQRVSK GILKAFGNSTEKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDDCRTVSLVHESFLDLSLPVLDDQSGKKNINDKNVKKTMEEEDKDSEEEKDDSYMKTRSDVPSGTSKHTQKKAKKQAKKQ AKNQRRQQKIQERFLHFNEICTTNYTEDNDHEAETALPGEGEVDTEFNRGSQEELTQTELCANQKDVNGQEEMIESAADERKCPEHPEVKSVSTESDLGSLTSAPECPRDLNGAFLEERTSGELDITN GLKNLTLNAAVDPDEISIEILNDSHSPALKVYEVMNEDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLVSLAPPVLTLHLKRFQQ AGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYERIL hide sequence

Ensembl Acc Id:

ENSRNOP00000002173 ⟸ ENSRNOT00000002173

RefSeq Acc Id:	XP_063126503 ⟸ XM_063270433
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126504 ⟸ XM_063270434
- Peptide Label:	isoform X2

Protein Domains

USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2KJ09-F1-model_v2	AlphaFold	Q2KJ09	1-826	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698023

Promoter ID:

EPDNEW_R8547

Type:

initiation region

Name:

Usp16_1

Description:

ubiquitin specific peptidase 16

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	27,101,253 - 27,101,313	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-22052	BioCyc
Ensembl Genes	ENSRNOG00000001598	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000002173	ENTREZGENE
	ENSRNOT00000002173.7	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
	Cysteine proteinases	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7315796	IMAGE-MGC_LOAD
	IMAGE:7934674	IMAGE-MGC_LOAD
InterPro	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C19	UniProtKB/Swiss-Prot
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot
	UBP16	UniProtKB/Swiss-Prot
	USP_CS	UniProtKB/Swiss-Prot
	USP_dom	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
	Znf_UBP	UniProtKB/Swiss-Prot
KEGG Report	rno:288306	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105608	IMAGE-MGC_LOAD
	MGC:124708	IMAGE-MGC_LOAD
NCBI Gene	288306	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/Swiss-Prot
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/Swiss-Prot
Pfam	UCH	UniProtKB/Swiss-Prot
	zf-UBP	UniProtKB/Swiss-Prot
PhenoGen	Usp16	PhenoGen
PROSITE	USP_1	UniProtKB/Swiss-Prot
	USP_2	UniProtKB/Swiss-Prot
	USP_3	UniProtKB/Swiss-Prot
	ZF_UBP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001598	RatGTEx
SMART	ZnF_UBP	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
	SSF54001	UniProtKB/Swiss-Prot
UniProt	Q2KJ09	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Usp16	ubiquitin specific peptidase 16		ubiquitin specific protease 16	Name updated	1299863	APPROVED
2005-12-06	Usp16	ubiquitin specific protease 16	Usp16_predicted	ubiquitin specific protease 16 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Usp16_predicted	ubiquitin specific protease 16 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

RGD Manual Annotations