Usp7 (ubiquitin specific peptidase 7) - Rat Genome Database

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Gene: Usp7 (ubiquitin specific peptidase 7) Rattus norvegicus
Analyze
Symbol: Usp7
Name: ubiquitin specific peptidase 7
RGD ID: 1306915
Description: Enables cysteine-type deubiquitinase activity and identical protein binding activity. Involved in positive regulation of apoptotic process; protein deubiquitination; and regulation of protein stability. Predicted to be located in XY body and cytoplasm. Predicted to be part of protein-containing complex. Predicted to be active in PML body and cytosol. Orthologous to human USP7 (ubiquitin specific peptidase 7); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deubiquitinating enzyme 7; Hausp; herpes-virus-associated ubiquitin-specific protease; herpesvirus-associated ubiquitin-specific protease; LOC360471; rHAUSP; ubiquitin carboxyl-terminal hydrolase 7; ubiquitin specific peptidase 7 (herpes virus-associated); ubiquitin specific protease 7 (herpes virus-associated); ubiquitin thioesterase 7; ubiquitin-specific-processing protease 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8107,335,508 - 7,432,018 (+)NCBIGRCr8
mRatBN7.2106,880,684 - 6,925,355 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl106,828,795 - 6,925,355 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1011,588,325 - 11,631,578 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01011,084,682 - 11,128,048 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0106,735,783 - 6,779,154 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0106,930,462 - 7,019,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl106,975,244 - 7,018,930 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0105,752,834 - 5,822,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4106,917,612 - 6,963,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1106,917,611 - 6,963,451 (+)NCBI
Celera105,876,459 - 5,919,649 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Usp7RatCharcot-Marie-Tooth disease type 1C  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 1CClinVarPMID:28492532
Usp7RatGABA aminotransferase deficiency  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Gamma-aminobutyric acid transaminase deficiencyClinVarPMID:25738457 and PMID:28492532
Usp7Ratgenetic disease  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16199547 more ...
Usp7RatHao-Fountain Syndrome  ISOUSP7 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
Usp7Ratintellectual disability  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
Usp7RatLandau-Kleffner syndrome  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Landau-Kleffner syndromeClinVarPMID:28492532 and PMID:29961510
Usp7RatMacrocephaly  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: MacrocephalyClinVarPMID:25741868
Usp7RatMHC class II deficiency  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
Usp7RatMuscle Hypotonia  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: HypotoniaClinVarPMID:25741868
Usp7RatNeurodevelopmental Disorders  ISOUSP7 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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Original Reference(s)
Usp7RatProstatic Neoplasms  ISOUSP7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29610475
Usp7Raturinary bladder cancer  ISOUSP7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26039340
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Original Reference(s)
Usp7RatHao-Fountain Syndrome  ISOUSP7 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Usp7Rat1,2-dimethylhydrazine decreases expressionISOUsp7 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of USP7 mRNACTDPMID:22206623
Usp7Rat1,2-dimethylhydrazine multiple interactionsISOUsp7 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of USP7 mRNACTDPMID:22206623
Usp7Rat17alpha-ethynylestradiol multiple interactionsISOUsp7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of USP7 mRNACTDPMID:17942748
Usp7Rat17alpha-ethynylestradiol increases expressionISOUsp7 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of USP7 mRNACTDPMID:17942748
Usp7Rat17beta-estradiol increases expressionISOUSP7 (Homo sapiens)6480464Estradiol results in increased expression of USP7 mRNACTDPMID:23019147
Usp7Rat17beta-estradiol increases expressionISOUsp7 (Mus musculus)6480464Estradiol results in increased expression of USP7 mRNACTDPMID:39298647
Usp7Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOUsp7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of USP7 mRNACTDPMID:17942748
Usp7Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of USP7 mRNACTDPMID:33387578
Usp7Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOUsp7 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of USP7 mRNACTDPMID:21570461 and PMID:24680724
Usp7Rat2,4,6-tribromophenol decreases expressionISOUSP7 (Homo sapiens)64804642 more ...CTDPMID:31675489
Usp7Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of USP7 mRNACTDPMID:21346803
Usp7Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of USP7 mRNACTDPMID:21346803
Usp7Rat3,3',5,5'-tetrabromobisphenol A decreases expressionEXP 6480464tetrabromobisphenol A results in decreased expression of USP7 mRNACTDPMID:27914987
Usp7Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOUSP7 (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of USP7 proteinCTDPMID:31675489
Usp7Rat3,4-methylenedioxymethamphetamine decreases expressionISOUsp7 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of USP7 mRNACTDPMID:26251327
Usp7Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOUSP7 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of USP7 mRNACTDPMID:28628672
Usp7Rat4,4'-sulfonyldiphenol multiple interactionsISOUSP7 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of USP7 mRNACTDPMID:28628672
Usp7Rat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2 and 6-dinitrotoluene affects the expression of USP7 mRNACTDPMID:21346803
Usp7Rat4-hydroxyphenyl retinamide increases expressionISOUsp7 (Mus musculus)6480464Fenretinide results in increased expression of USP7 mRNACTDPMID:28973697
Usp7Rat4-nitrophenol decreases expressionISOUsp7 (Mus musculus)64804644-nitrophenol results in decreased expression of USP7 mRNACTDPMID:34673133

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Biological Process
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Original Reference(s)
Usp7RatDNA alkylation repair involved_inISOUSP7 (Homo sapiens)1624291 PMID:25944111RGDPMID:25944111
Usp7RatDNA alkylation repair involved_inISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7RatDNA alkylation repair involved_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7RatDNA damage response involved_inIEAUniProtKB-KW:KW-02271600115GO_REF:0000043UniProtGO_REF:0000043
Usp7RatDNA repair involved_inIEAUniProtKB-KW:KW-02341600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratmonoubiquitinated protein deubiquitination acts_upstream_of_or_withinISOUSP7 (Homo sapiens)1624291 PMID:26280536RGDPMID:26280536
Usp7Ratmonoubiquitinated protein deubiquitination acts_upstream_of_or_withinIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratnegative regulation of gene expression via chromosomal CpG island methylation involved_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratnegative regulation of gene expression via chromosomal CpG island methylation involved_inISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Ratnegative regulation of gene expression via chromosomal CpG island methylation involved_inISOUSP7 (Homo sapiens)1624291 PMID:21745816RGDPMID:21745816
Usp7Ratnegative regulation of gluconeogenesis involved_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratnegative regulation of gluconeogenesis involved_inISOUSP7 (Homo sapiens)1624291 PMID:28655758RGDPMID:28655758
Usp7Ratnegative regulation of gluconeogenesis involved_inISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Ratnegative regulation of NF-kappaB transcription factor activity involved_inISOUSP7 (Homo sapiens)1624291 PMID:11279055RGDPMID:11279055
Usp7Ratnegative regulation of proteasomal ubiquitin-dependent protein catabolic process involved_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratnegative regulation of proteasomal ubiquitin-dependent protein catabolic process involved_inISOUSP7 (Homo sapiens)1624291 PMID:26678539RGDPMID:26678539
Usp7Ratnegative regulation of TORC1 signaling involved_inISOUSP7 (Homo sapiens)1624291 PMID:35216969RGDPMID:35216969
Usp7Ratnegative regulation of TORC1 signaling involved_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratpositive regulation of apoptotic process  IDA 2316130 RGD 
Usp7Ratprotein deubiquitination involved_inISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
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Original Reference(s)
Usp7Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratchromosome located_inIEAUniProtKB-SubCell:SL-04681600115GO_REF:0000044UniProtGO_REF:0000044
Usp7Ratcytoplasm located_inISOUsp7 (Mus musculus)1624291 PMID:12093161RGDPMID:12093161
Usp7Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Usp7Ratcytosol located_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratcytosol is_active_inIBAFB:FBgn0016756 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Usp7Ratcytosol located_inISOUSP7 (Homo sapiens)1624291 PMID:11279055 and PMID:26365382RGDPMID:11279055 and PMID:26365382
Usp7Ratnucleus located_inISOUSP7 (Homo sapiens)1624291 PMID:11279055 more ...RGDPMID:11279055 more ...
Usp7Ratnucleus located_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratnucleus located_inISOUsp7 (Mus musculus)1624291 PMID:12093161RGDPMID:12093161
Usp7Ratnucleus is_active_inIBAFB:FBgn0016756 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Usp7Ratnucleus located_inISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Usp7RatPML body is_active_inISOUSP7 (Homo sapiens)1624291 PMID:20719947RGDPMID:20719947
Usp7RatPML body located_inIEAUniProtKB-SubCell:SL-04651600115GO_REF:0000044UniProtGO_REF:0000044
Usp7RatPML body is_active_inIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratprotein-containing complex part_ofIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratprotein-containing complex part_ofISOUSP7 (Homo sapiens)1624291 PMID:26678539RGDPMID:26678539
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Molecular Function
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Original Reference(s)
Usp7Ratcysteine-type deubiquitinase activity enablesIEAEC:3.4.19.121600115GO_REF:0000003UniProtGO_REF:0000003
Usp7Ratcysteine-type deubiquitinase activity  IDA 2316130 RGD 
Usp7Ratcysteine-type deubiquitinase activity enablesISOUSP7 (Homo sapiens)1624291 PMID:11923872 more ...RGDPMID:11923872 more ...
Usp7Ratcysteine-type deubiquitinase activity enablesIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratcysteine-type deubiquitinase activity enablesISOUsp7 (Mus musculus)1624291 PMID:21268065 and PMID:27863226RGDPMID:21268065 and PMID:27863226
Usp7Ratcysteine-type deubiquitinase activity enablesIBAFB:FBgn0005632 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Usp7Ratcysteine-type deubiquitinase activity enablesIEAInterPro:IPR001394 and InterPro:IPR0182001600115GO_REF:0000002InterProGO_REF:0000002
Usp7Ratcysteine-type deubiquitinase activity enablesIEAARBA:ARBA000268801600115GO_REF:0000117UniProtGO_REF:0000117
Usp7Ratcysteine-type deubiquitinase activity enablesISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Ratcysteine-type endopeptidase activity enablesIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratcysteine-type endopeptidase activity enablesISOUSP7 (Homo sapiens)1624291 PMID:21745816RGDPMID:21745816
Usp7Ratcysteine-type endopeptidase activity enablesISOUsp7 (Mus musculus)1624291 PMID:21268065RGDPMID:21268065
Usp7Ratcysteine-type endopeptidase activity enablesISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Ratcysteine-type peptidase activity enablesIEAUniProtKB-KW:KW-07881600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratdeubiquitinase activity enablesISOUSP7 (Homo sapiens)1624291 PMID:18410486RGDPMID:18410486
Usp7Ratdeubiquitinase activity enablesIEAUniProtKB:Q93009 and ensembl:ENSP000003435351600115GO_REF:0000107EnsemblGO_REF:0000107
Usp7Ratdeubiquitinase activity enablesISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
Usp7Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Usp7Ratidentical protein binding  IPIUsp7 (Rattus norvegicus)2316134homodimerizationRGD 
Usp7RatK48-linked deubiquitinase activity enablesISSUniProtKB:Q930091600115GO_REF:0000024UniProtGO_REF:0000024
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RGD Manual Annotations


  
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Original Reference(s)
Usp7Ratp53 signaling pathway   ISOUSP7 (Homo sapiens)2316155 RGD 

Imported Annotations - PID (archival)

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Original Reference(s)
Usp7Ratp53 signaling pathway   ISOUSP7 (Homo sapiens)6484113 PIDPID:200206

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#
Reference Title
Reference Citation
1. Molecular cloning of rHAUSP encoding a deubiquitinating enzyme in rat testis. Baek KH, etal., Oncol Rep. 2006 Jan;15(1):173-7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Modes of p53 regulation. Kruse JP and Gu W, Cell. 2009 May 15;137(4):609-22. doi: 10.1016/j.cell.2009.04.050.
5. HAUSP, a deubiquitinating enzyme for p53, is polyubiquitinated, polyneddylated, and dimerized. Lee HJ, etal., FEBS Lett. 2005 Aug 29;579(21):4867-72.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
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PMID:11279055   PMID:11923872   PMID:12093161   PMID:16791210   PMID:16964248   PMID:18410486   PMID:18566590   PMID:19182904   PMID:20096447   PMID:21258371   PMID:21268065   PMID:21745816  
PMID:22466612   PMID:25172512   PMID:25634095   PMID:25944111   PMID:26280536   PMID:26678539   PMID:27123980   PMID:27863226   PMID:28655758   PMID:33157209   PMID:33170804   PMID:33241864  
PMID:35538032   PMID:37257587  



Usp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8107,335,508 - 7,432,018 (+)NCBIGRCr8
mRatBN7.2106,880,684 - 6,925,355 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl106,828,795 - 6,925,355 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1011,588,325 - 11,631,578 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01011,084,682 - 11,128,048 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0106,735,783 - 6,779,154 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0106,930,462 - 7,019,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl106,975,244 - 7,018,930 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0105,752,834 - 5,822,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4106,917,612 - 6,963,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1106,917,611 - 6,963,451 (+)NCBI
Celera105,876,459 - 5,919,649 (+)NCBICelera
Cytogenetic Map10q12NCBI
USP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38168,892,097 - 8,963,906 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl168,892,097 - 8,975,328 (-)EnsemblGRCh38hg38GRCh38
GRCh37168,985,954 - 9,057,763 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36168,893,452 - 8,964,842 (-)NCBINCBI36Build 36hg18NCBI36
Build 34168,894,850 - 8,964,842NCBI
Celera169,152,724 - 9,223,882 (-)NCBICelera
Cytogenetic Map16p13.2NCBI
HuRef168,907,081 - 8,945,418 (-)NCBIHuRef
CHM1_1168,985,936 - 9,057,340 (-)NCBICHM1_1
T2T-CHM13v2.0168,924,836 - 8,996,578 (-)NCBIT2T-CHM13v2.0
Usp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39168,506,586 - 8,574,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl168,507,459 - 8,610,172 (-)EnsemblGRCm39 Ensembl
GRCm38168,688,722 - 8,757,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl168,689,595 - 8,792,308 (-)EnsemblGRCm38mm10GRCm38
MGSCv37168,688,815 - 8,738,435 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36168,606,101 - 8,653,606 (-)NCBIMGSCv36mm8
Celera169,334,440 - 9,362,384 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map164.28NCBI
Usp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554429,315,225 - 9,356,393 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554429,316,022 - 9,355,751 (+)NCBIChiLan1.0ChiLan1.0
USP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,431,901 - 9,501,001 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11613,210,502 - 13,278,888 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0167,825,332 - 7,895,095 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1169,065,366 - 9,106,406 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl169,065,858 - 9,106,146 (-)Ensemblpanpan1.1panPan2
USP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1633,277,328 - 33,315,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl633,277,444 - 33,314,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha634,641,327 - 34,706,509 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0633,449,047 - 33,514,314 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl633,448,218 - 33,514,312 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1633,251,796 - 33,316,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0633,121,375 - 33,186,820 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0633,570,486 - 33,608,545 (+)NCBIUU_Cfam_GSD_1.0
Usp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344109,848,236 - 109,882,862 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365307,694,379 - 7,724,684 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365307,693,681 - 7,724,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl333,775,829 - 33,810,465 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1333,754,357 - 33,810,480 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2334,686,115 - 34,742,973 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.158,470,137 - 8,540,736 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl58,469,230 - 8,540,770 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606821,677,314 - 21,749,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248246,276,354 - 6,338,227 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248246,277,111 - 6,338,051 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Usp7
250 total Variants

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000046232
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat

1 to 10 of 21 rows
RH143229  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8107,428,098 - 7,428,295 (+)Marker Load Pipeline
mRatBN7.2106,921,435 - 6,921,632 (+)MAPPERmRatBN7.2
Rnor_6.0107,015,988 - 7,016,184NCBIRnor6.0
Rnor_5.0105,818,307 - 5,818,503UniSTSRnor5.0
RGSC_v3.4106,960,708 - 6,960,904UniSTSRGSC3.4
Celera105,916,898 - 5,917,094UniSTS
RH 3.4 Map1067.21UniSTS
Cytogenetic Map10q12UniSTS
RH140275  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8107,430,391 - 7,430,857 (+)Marker Load Pipeline
mRatBN7.2106,923,728 - 6,924,194 (+)MAPPERmRatBN7.2
Rnor_6.0107,018,281 - 7,018,746NCBIRnor6.0
Rnor_5.0105,820,600 - 5,821,065UniSTSRnor5.0
RGSC_v3.4106,963,001 - 6,963,466UniSTSRGSC3.4
Celera105,919,198 - 5,919,663UniSTS
Cytogenetic Map10q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000046232   ⟹   ENSRNOP00000041134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,896,691 - 6,925,355 (+)Ensembl
Rnor_6.0 Ensembl106,975,244 - 7,018,930 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094143   ⟹   ENSRNOP00000093874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,892,557 - 6,925,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095866   ⟹   ENSRNOP00000081458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,895,653 - 6,925,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100242   ⟹   ENSRNOP00000096267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,880,020 - 6,925,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112945   ⟹   ENSRNOP00000088505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,894,589 - 6,925,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117646   ⟹   ENSRNOP00000083535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl106,828,795 - 6,925,355 (+)Ensembl
RefSeq Acc Id: NM_001024790   ⟹   NP_001019961
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,387,353 - 7,432,018 (+)NCBI
mRatBN7.2106,880,684 - 6,925,355 (+)NCBI
Rnor_6.0106,975,289 - 7,018,732 (+)NCBI
Rnor_5.0105,752,834 - 5,822,229 (+)NCBI
RGSC_v3.4106,917,612 - 6,963,452 (+)RGD
Celera105,876,459 - 5,919,649 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245757   ⟹   XP_006245819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,396,481 - 7,432,018 (+)NCBI
mRatBN7.2106,891,946 - 6,925,033 (+)NCBI
Rnor_6.0106,986,082 - 7,019,910 (+)NCBI
Rnor_5.0105,752,834 - 5,822,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063269283   ⟹   XP_063125353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,335,508 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269284   ⟹   XP_063125354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,367,617 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269285   ⟹   XP_063125355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,367,599 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269286   ⟹   XP_063125356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,335,508 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269287   ⟹   XP_063125357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,386,737 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269288   ⟹   XP_063125358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,396,481 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269289   ⟹   XP_063125359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,404,604 - 7,432,018 (+)NCBI
RefSeq Acc Id: XM_063269290   ⟹   XP_063125360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8107,415,812 - 7,432,018 (+)NCBI
1 to 5 of 16 rows
1 to 5 of 16 rows
RefSeq Acc Id: NP_001019961   ⟸   NM_001024790
- UniProtKB: Q4VSI4 (UniProtKB/Swiss-Prot),   A0A8I6AP58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245819   ⟸   XM_006245757
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AKU3 (UniProtKB/TrEMBL),   A0A8I5ZSA1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041134   ⟸   ENSRNOT00000046232
Ensembl Acc Id: ENSRNOP00000083535   ⟸   ENSRNOT00000117646
Ensembl Acc Id: ENSRNOP00000088505   ⟸   ENSRNOT00000112945
MATH   USP

Name Modeler Protein Id AA Range Protein Structure
AF-Q4VSI4-F1-model_v2 AlphaFold Q4VSI4 1-1103 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696950
Promoter ID:EPDNEW_R7475
Type:single initiation site
Name:Usp7_1
Description:ubiquitin specific peptidase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0106,975,333 - 6,975,393EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-26099 BioCyc
Ensembl Genes ENSRNOG00000025496 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000094143 ENTREZGENE
  ENSRNOT00000100242 ENTREZGENE
  ENSRNOT00000117646 ENTREZGENE
Gene3D-CATH Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A UniProtKB/Swiss-Prot
  Cysteine proteinases UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro MATH/TRAF_dom UniProtKB/Swiss-Prot
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C19 UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  TRAF-like UniProtKB/Swiss-Prot
  USP7_ICP0-binding_dom UniProtKB/Swiss-Prot
  USP_C UniProtKB/Swiss-Prot
  USP_CS UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
KEGG Report rno:360471 UniProtKB/Swiss-Prot
NCBI Gene 360471 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 UniProtKB/Swiss-Prot
Pfam MATH_2 UniProtKB/Swiss-Prot
  UCH UniProtKB/Swiss-Prot
  USP7_C2 UniProtKB/Swiss-Prot
  USP7_ICP0_bdg UniProtKB/Swiss-Prot
PhenoGen Usp7 PhenoGen
PROSITE MATH UniProtKB/Swiss-Prot
  USP_1 UniProtKB/Swiss-Prot
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000025496 RatGTEx
SMART MATH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
  TRAF domain-like UniProtKB/Swiss-Prot
UniProt A0A8I5ZSA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6B9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AP58 ENTREZGENE, UniProtKB/TrEMBL
  A6K4L6_RAT UniProtKB/TrEMBL
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Usp7  ubiquitin specific peptidase 7  Usp7  ubiquitin specific peptidase 7 (herpes virus-associated)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Usp7  ubiquitin specific peptidase 7 (herpes virus-associated)  Usp7  ubiquitin specific peptidase 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Usp7  ubiquitin specific peptidase 7  Usp7  ubiquitin specific protease 7 (herpes virus-associated)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Usp7  ubiquitin specific protease 7 (herpes virus-associated)  Usp7_predicted  ubiquitin specific protease 7 (herpes virus-associated) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Usp7_predicted  ubiquitin specific protease 7 (herpes virus-associated) (predicted)      Symbol and Name status set to approved 70820 APPROVED