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Gene: Usp29 (ubiquitin specific peptidase 29) Rattus norvegicus

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Symbol:

Usp29

Name:

ubiquitin specific peptidase 29

RGD ID:

1306648

Description:

Predicted to enable cysteine-type deubiquitinase activity and cysteine-type endopeptidase activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; positive regulation of type I interferon-mediated signaling pathway; and protein K48-linked deubiquitination. Predicted to be active in cytosol and nucleus. Orthologous to human USP29 (ubiquitin specific peptidase 29); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC102547903; LOC361495; ubiquitin carboxyl-terminal hydrolase 29; ubiquitin specific protease 29; uncharacterized LOC102547903

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	75,907,331 - 75,959,896 (-)	NCBI		GRCr8
mRatBN7.2	1	66,874,216 - 67,097,731 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	66,874,017 - 67,097,686 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	72,225,591 - 72,278,161 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	80,862,651 - 80,915,229 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,057,151 - 74,109,250 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	69,988,673 - 70,042,015 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	69,988,673 - 70,003,582 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,382,517 - 71,435,036 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	65,272,956 - 65,326,368 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	65,354,233 - 65,357,090 (-)	NCBI
Celera	1	64,627,715 - 64,680,068 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

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Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp29	Rat	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	EXP		6480464	2 more ...	CTD	PMID:27291303
Usp29	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	Usp29 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
Usp29	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	USP29 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of USP29 mRNA	CTD	PMID:21296121
Usp29	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of USP29 mRNA	CTD	PMID:33387578
Usp29	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Usp29 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of USP29 mRNA	CTD	PMID:21354282
Usp29	Rat	2-palmitoylglycerol	increases expression	ISO	USP29 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of USP29 mRNA	CTD	PMID:37199045
Usp29	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Usp29 (Mus musculus)	6480464	bisphenol S results in increased expression of USP29 mRNA	CTD	PMID:30951980
Usp29	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of USP29 mRNA	CTD	PMID:30047161
Usp29	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of USP29 mRNA	CTD	PMID:30047161
Usp29	Rat	benzo[a]pyrene	increases expression	ISO	USP29 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of USP29 mRNA	CTD	PMID:22316170
Usp29	Rat	benzo[a]pyrene	affects methylation	ISO	USP29 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of USP29 promoter	CTD	PMID:27901495
Usp29	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of USP29 mRNA	CTD	PMID:25181051
Usp29	Rat	bisphenol A	decreases expression	ISO	Usp29 (Mus musculus)	6480464	bisphenol A results in decreased expression of USP29 mRNA	CTD	PMID:32156529
Usp29	Rat	bisphenol F	increases expression	ISO	Usp29 (Mus musculus)	6480464	bisphenol F results in increased expression of USP29 mRNA	CTD	PMID:30951980
Usp29	Rat	bisphenol F	decreases methylation	ISO	USP29 (Homo sapiens)	6480464	bisphenol F results in decreased methylation of USP29 gene	CTD	PMID:31601247
Usp29	Rat	cadmium atom	multiple interactions	ISO	Usp29 (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of USP29 mRNA	CTD	PMID:37325564
Usp29	Rat	cadmium dichloride	increases expression	ISO	Usp29 (Mus musculus)	6480464	Cadmium Chloride results in increased expression of USP29 mRNA	CTD	PMID:20061341
Usp29	Rat	cadmium dichloride	multiple interactions	ISO	Usp29 (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of USP29 mRNA	CTD	PMID:37325564
Usp29	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of USP29 mRNA	CTD	PMID:33453195
Usp29	Rat	crocidolite asbestos	increases expression	ISO	Usp29 (Mus musculus)	6480464	Asbestos and Crocidolite results in increased expression of USP29 mRNA	CTD	PMID:29279043
Usp29	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of USP29 mRNA	CTD	PMID:33387578
Usp29	Rat	glyphosate	increases expression	ISO	Usp29 (Mus musculus)	6480464	Glyphosate results in increased expression of USP29 mRNA	CTD	PMID:35897073
Usp29	Rat	lead(0)	increases methylation	ISO	Usp29 (Mus musculus)	6480464	Lead results in increased methylation of USP29 gene	CTD	PMID:38833407
Usp29	Rat	maneb	multiple interactions	ISO	Usp29 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP29 mRNA	CTD	PMID:36117858
Usp29	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of USP29 mRNA	CTD	PMID:30047161
Usp29	Rat	N-ethyl-N-nitrosourea	increases mutagenesis	ISO	Usp29 (Mus musculus)	6480464	Ethylnitrosourea results in increased mutagenesis of USP29 exon	CTD	PMID:16300676
Usp29	Rat	N-nitrosomorpholine	increases expression	EXP		6480464	N-nitrosomorpholine results in increased expression of USP29 protein	CTD	PMID:19716841
Usp29	Rat	paraquat	multiple interactions	ISO	Usp29 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of USP29 mRNA	CTD	PMID:36117858
Usp29	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	Usp29 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of USP29 mRNA	CTD	PMID:37995155
Usp29	Rat	permethrin	decreases expression	ISO	USP29 (Homo sapiens)	6480464	Permethrin results in decreased expression of USP29 mRNA	CTD	PMID:37047231
Usp29	Rat	pirinixic acid	multiple interactions	ISO	USP29 (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of USP29 mRNA	CTD	PMID:19710929
Usp29	Rat	pirinixic acid	decreases expression	ISO	Usp29 (Mus musculus)	6480464	pirinixic acid results in decreased expression of USP29 mRNA	CTD	PMID:23811191
Usp29	Rat	thimerosal	decreases expression	ISO	Usp29 (Mus musculus)	6480464	Thimerosal results in decreased expression of USP29 mRNA	CTD	PMID:24675092
Usp29	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of USP29 mRNA	CTD	PMID:34492290
Usp29	Rat	valproic acid	increases methylation	ISO	USP29 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of USP29 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp29	Rat	defense response to virus	involved_in	IEA	UniProtKB:Q9ES63 and ensembl:ENSMUSP00000143769	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp29	Rat	defense response to virus	involved_in	ISO	Usp29 (Mus musculus)	1624291	PMID:32457395	RGD	PMID:32457395
Usp29	Rat	G1/S transition of mitotic cell cycle	involved_in	IBA	PANTHER:PTN002363418 and UniProtKB:Q86T82	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp29	Rat	positive regulation of type I interferon-mediated signaling pathway	involved_in	ISO	Usp29 (Mus musculus)	1624291	PMID:32457395	RGD	PMID:32457395
Usp29	Rat	positive regulation of type I interferon-mediated signaling pathway	involved_in	IEA	UniProtKB:Q9ES63 and ensembl:ENSMUSP00000143769	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp29	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp29	Rat	protein K48-linked deubiquitination	involved_in	IEA	UniProtKB:Q9ES63 and ensembl:ENSMUSP00000143769	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp29	Rat	protein K48-linked deubiquitination	involved_in	ISO	Usp29 (Mus musculus)	1624291	PMID:32457395	RGD	PMID:32457395
Usp29	Rat	protein stabilization	involved_in	ISO	Usp29 (Mus musculus)	1624291	PMID:32457395	RGD	PMID:32457395
Usp29	Rat	protein stabilization	involved_in	IEA	UniProtKB:Q9ES63 and ensembl:ENSMUSP00000143769	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp29	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp29	Rat	regulation of protein stability	involved_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp29	Rat	cytosol	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp29	Rat	nucleus	is_active_in	IBA	FB:FBgn0016756 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp29	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394 and InterPro:IPR018200	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp29	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR000880756	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Usp29	Rat	cysteine-type deubiquitinase activity	enables	IBA	FB:FBgn0005632 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Usp29	Rat	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Usp29	Rat	cysteine-type endopeptidase activity	enables	ISO	Usp29 (Mus musculus)	1624291	PMID:32457395	RGD	PMID:32457395
Usp29	Rat	cysteine-type endopeptidase activity	enables	IEA	UniProtKB:Q9ES63 and ensembl:ENSMUSP00000143769	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp29	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp29	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp29	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp29	Rat	protein binding	enables	ISO	USP29 (Homo sapiens)	1624291	UniProtKB:Q96GD4 and PMID:38233848	RGD	PMID:38233848

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Usp29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	75,907,331 - 75,959,896 (-)	NCBI		GRCr8
mRatBN7.2	1	66,874,216 - 67,097,731 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	66,874,017 - 67,097,686 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	72,225,591 - 72,278,161 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	80,862,651 - 80,915,229 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,057,151 - 74,109,250 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	69,988,673 - 70,042,015 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	69,988,673 - 70,003,582 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,382,517 - 71,435,036 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	65,272,956 - 65,326,368 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	65,354,233 - 65,357,090 (-)	NCBI
Celera	1	64,627,715 - 64,680,068 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

USP29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	57,119,087 - 57,131,926 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	57,119,138 - 57,131,926 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	57,630,455 - 57,643,294 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	62,323,321 - 62,335,106 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	62,323,320 - 62,335,106	NCBI
Celera	19	54,675,198 - 54,686,985 (+)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	53,944,257 - 53,956,044 (+)	NCBI		HuRef
CHM1_1	19	57,624,953 - 57,636,735 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	60,215,749 - 60,228,591 (+)	NCBI		T2T-CHM13v2.0

Usp29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	6,733,560 - 6,970,219 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	6,733,577 - 6,970,218 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	6,730,559 - 6,967,220 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	6,730,578 - 6,967,219 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	6,683,452 - 6,919,931 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	6,334,669 - 6,571,302 (+)	NCBI		MGSCv36	mm8
Celera	7	6,459,284 - 6,692,589 (+)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	4.04	NCBI

USP29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	63,404,084 - 63,418,583 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	65,192,057 - 65,206,559 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	54,137,663 - 54,149,586 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	62,931,619 - 62,942,882 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

LOC101978367
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	725,733 - 729,562 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936882	752,014 - 753,981 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	49,539,006 - 49,557,565 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	49,554,341 - 49,557,079 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	2,627,132 - 2,641,693 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in Usp29
1239 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	467
Count of miRNA genes:	261
Interacting mature miRNAs:	315
Transcripts:	ENSRNOT00000055721
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

D1Got394

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	66,925,904 - 66,926,145 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	70,041,127 - 70,041,367	NCBI	Rnor6.0
Rnor_5.0	1	71,434,148 - 71,434,388	UniSTS	Rnor5.0
RGSC_v3.4	1	65,325,480 - 65,325,720	UniSTS	RGSC3.4
Celera	1	64,679,180 - 64,679,420	UniSTS
Cytogenetic Map	1	q12	UniSTS

BI286665

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	66,875,896 - 66,876,053 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	69,990,349 - 69,990,505	NCBI	Rnor6.0
Rnor_5.0	1	71,384,193 - 71,384,349	UniSTS	Rnor5.0
RGSC_v3.4	1	65,274,632 - 65,274,788	UniSTS	RGSC3.4
Celera	1	64,629,391 - 64,629,547	UniSTS
RH 3.4 Map	1	745.6	UniSTS
Cytogenetic Map	1	q12	UniSTS

RH135090

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	66,878,522 - 66,878,732 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	69,992,973 - 69,993,182	NCBI	Rnor6.0
Rnor_5.0	1	71,386,817 - 71,387,026	UniSTS	Rnor5.0
RGSC_v3.4	1	65,277,256 - 65,277,465	UniSTS	RGSC3.4
Celera	1	64,632,015 - 64,632,224	UniSTS
RH 3.4 Map	1	742.3	UniSTS
Cytogenetic Map	1	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	73	72	41	25	41	6	195	97	93	40	58	31


RefSeq Transcripts	NM_001108465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055721 ⟹ ENSRNOP00000052581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	66,874,017 - 67,097,686 (-)	Ensembl
Rnor_6.0 Ensembl	1	69,988,673 - 70,003,582 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116912 ⟹ ENSRNOP00000086513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	66,874,017 - 67,097,686 (-)	Ensembl

RefSeq Acc Id:

NM_001108465 ⟹ NP_001101935

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	75,907,331 - 75,959,896 (-)	NCBI
mRatBN7.2	1	66,874,221 - 66,926,793 (-)	NCBI
Rnor_6.0	1	69,988,673 - 70,042,015 (-)	NCBI
Rnor_5.0	1	71,382,517 - 71,435,036 (-)	NCBI
RGSC_v3.4	1	65,272,956 - 65,326,368 (-)	RGD
Celera	1	64,627,715 - 64,680,068 (-)	RGD

Sequence:

show sequence

AAGAGAGCTTCAACTGGATCCTCAGCAGGTGATGCCATCTGGTCCAGGGGCTCTCTTGTCTTGCACTGTGGACATTCAGCACTGGAGAATTCTTTGCTTTGCTTTCTCAATCTGGTCTACAAAGTGAG
TTCCAGGACAGCCAGGACTTTAGAGGGAAAACCTCATCTCAAAGGTCCTGGAAGTGGAACTTAACGTCTTCAAACTTGGCCGAAGTCTCCTTTATCCACTGAGCCACCTCACTGGTCCTACAAATACA
GTTAACAGCCTGCAGCAGGACCGTGACCAGCCCTCTACAGCTGTGATATTCCTGAGTAGAAACCTGGGACTTGGGTCTGCATCTGGAATCTGCAATCAGAAAGGCCAGCACCGGAGGTGACGAGGACT
CAACCTCATATTGCCACAACTGTCTCATTGGCATAAGAGACTAGAGGTTGACCAGGACTTCCACCGTCTCCGGCACAACAGTGAAGACAGCAGAGGCACCAGAGCCCAACATCACAGCATTTTACCTA
ATTTTACTTCCGATCGTACATGTTTTATTTGTGAAGAAAGAATGGCTCACCTAAAGATACATGGTTTGGTCCAGATCCGCAGCACAAACAGGAGCAAGCACACCAGGGCATCTCAGTGGAAAGAAGCA
GTCATCGAAATAGTAGAAAGAAAACAGAAAGTTAATCTGGTGGTTTCTTTTAAGTTGGAGGAGAGGAGAAGGGTTTTTCAGCTGGGTGATAACGTTACAGGTGTAGTGGTTAGTGGCGAGCTGGGACT
GTATCATCTGGATTTAACTTTGAGAGATGACACGTCCTTACTCATTGACAAGTTATCCTCCGCAGATGTTGAGCATTTGAAGTCATTCCTGGATTCGTCCACTCCATGTGAATCCCAGCAACCCATGG
AGTCCATGAGTAATCAGGATACTCTTGAAATCAGCGACCCATTTTTCAGGGAGAACCAAGACGTAGTCTGTGTTTCCCTGAATACTGCCCTAGAGAGTGGGACACTGCTCTCCCGGAAGATGCCACTC
TGTATGTCAAACACCACGGGCAGTCATACTGAAAAAAAGAGAGGAGAAAAACAAGGCAGAAAAAGGAAGACAGAACCATCACCATCCACTGTAGAAGTGACCACCAAGGATATTCTCAAAGAAAATAA
TCCTGAACAAAAAAAGAAATCCAGGCGGTATTACTCCAGGAATAGAGGAGGCAAAGCCGAGAAAGCTGTGGCTTTAAGGGAACAAGAAAAGCGCAACAATTGGAAGCTTGAACCTGCTTTCAGTTCCA
AAGTCTATGGAAAGTCTACCCTAGACGGCACTGTTCTCCCAATCGCGACGTGCTCTGATGACAGAGATTTATCGATATTTGGCCTGGAGATCATAACACATAACGGAATCCAGCCTCCTCCAGACAAT
TACCTGAAGCAGCTAAAGCGTGAAGGCTTCCCCAATTTGGGAAATACTTGCTACATGAATTCCATCTTACAATCTGTCTTTGGAATTCCAACCTTTGCAAAGGACTTACTCACTCAAGGTATCCCATG
GGAGAAAGTTTCCTACGATGACCTTATCATGCCCTTAAGCCAGCTTCTTGTCTTGAAAGACATTCGAGATATAGAGATCAAGGGCGAGTTACTCACCAGTGTGAAGAAGTCCATCTCCACAGTTGCAG
ACACATTCTCGGGCAACGAACAGAATGATGCCCATGAGTTTTTAAGTCTGTGTTTAGACCAGCTGAAACTGAACATGGAAAAAGTAAATGCCATGTGGGACACTGAGAGGAAAAATGAACCAACGTGT
GCTGGAGCCAAAAGGTTTGTTTGTCCCGTTGGTGCTAATTTTGAATTTGAGCTGCATAGCTCCATCATCTGTGAAGGCTGTGGGGAGGCTACTCTCAAGACCGAAGTGAGCAATTACCTCTCCATCGA
CCTGCACCACGGGACAAAAACACACCCTCTCTCAATTCAAAAGTCTTTTGATCTGTTCTTCACACCAGAAAAAATTGAGCATAACTGCGAGAAATGCAAGAACAAGAATTCTGTTCTCAAGTACACAT
TGAGGAGACTCCCCAGGGTCCTCATTGTTCATCTGAAACGCTACCAAGTTACCACTGACTTGTTGCCAGTGAAGAGTGAGCAGCCAGTTGAGATTTCTCAGTATTTGAATATATCTTCCCATTGCCAT
GAAAACAGGAAGTTACCATTTCCCTTGATCAATACACCCCCTAAGGGAGACTATGATATCCCAAATGTCTCTCCAGGGCTGATGCCTGAGATCTTTAGCCAGTCAATGTCGTCTAAGAAGGTGATTTC
TGAATCCAGTGACCCCCTGGTTCTACAGGTTGGATCCAGCGTGGATGCCGAAATACAAAGCTTCCAGATAATGTATGAGGATGAAAGTGAAGAAGAGCAGCAGAGAGGCCTGGAAAGTGGTTCTATGC
TGGACCCAGAACTATTGAAGACAGAAAACAGGGTATTCAGACAGAAGATATCTCCAGCACCTGACTCAATGATGGGTGACGGATACAGCTTCCTTCCTATGCTCTGTGAGCCTATGAGCATCCAAGAC
CCAGGTCTTGCAGAGATGGGTCTTCAAGAGGTTCCAGAGAATCCAGAATTTAAGTACTATGGAAAGCCAGATGGCCGTACTAACAGTGAGCTGTCAAAACTCCACCAGAATCATGGGGGTCGAATCAA
GGGTTCGTATCTACCGGCATCATTTGCAAATATGAGAAGTTCTCTGGAAGACCCAGAGAAGGACCTGAGCAGGTCTTCAGAATTTGAGGAAGATGATCCGCATTCCTTTGCATTGGGTTCTGATGAAT
CAAAGGATGAGGAGATGGGAGACAATCTTCATAATTACAGGCTCGTCAGTGTTGTCAGCCATTTTGGGAGCTCCCCAAATTCAGGCCATTACGTAAGTGATGTGTATGACTTCCAAAGGCAAGCCTGG
CTCCTTTACAGTGATGTCCAAGTGTTCGAGAATCCAGATCCCTCCAGTCAGGAGAATAGGCTTCACACTGGATACATTTTCTTTTACATGCATAATGAGATTTTTGAGGAACTGTTGAAAAAAGCATC
GGAGTGCAAGGTCCTTAGCACATCTAAAGAAGAAAAGAGGGACATAGATTATTTCTCAACACTGCTTAATGGCCTTACATATATCCTAGAAGAGTTCTAAATCTTGCCCATAACGAAGAAGAGTCACA
TAACTCAAGATGAAAACTCGGCCAAAAACAAAAAATGAACGGACATACTAAAACAGAAACCCAGGCCTTGCTATCGCAGGCTATGCACCATTCTTTCCTACAAGGCTAAATGGTGCTTTTCTTGTTTT
GTGGTGGTTTTAATTTCTTCACAGACGTTAATAAAACTCATCATTTTGAGACTACCATTTGTTAACTATGATAATAGGGAATCTGGAGAGAAGGTACAGTAGTTGAGAGTGCAGACTACTCTGAGAGA
GGACCCAAGCTTGATTTCCCAATACCTATGTTAGGTGTGACTGGCGTGTCCTTGGAGGCAGGAGGCATGAGATAGCCTAGAATGGGAATACAAGTGATAGTAAGCTGCCTGACTTGGGTGCTGGGAAC
TGAACTTAGGTTTTCTGCAAGAGCAGTTTCCACTTTTAAACACTAAGCCATCTCTTGGCTTTCATTCTAATTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCTATCCAT
AAGAGCAAAGCATGATGCTTTTAAAATGTTGTTCTGAACCAGTACAACACAGCAAGGAGCTAATTATAAGTTCTAATGCTGGGGTTCAACGTCAGAAACAATACCAGTAGTTACTTAAGAGTTTGAGA
AATATTTATTTAGTGTGTGGAGTGTCTTATTGAATTTTAGTGTATATAAATCACTCATGTCATCCAGAGCCTCCTCATTGGTTTTATCCCAAATTCATATGTGCTGTTCTTTTGTCAGTTTATTAAAA
CCATTGTTTTCCATGTGTGTTTGTGATTCATCCATGAGATTATATAGCTGCCCACCACCTGGTTTTGTGCTTCTCAGAATTACAGGGTACATTAAAGTTACACAGGAAATGAAATAGGTAGCATTTGC
AAATTGCAAGGCACTCTAAGGACTCAGTGGGGAAAAACACCTGCCTTCAAGCCCTGTGACCTAACTCCAATGAGTTGTCCTCTGACCTCTAGGGAAGCTATCAGATGAACACCCATGAATAAATGAAT
GAATAAAATCTAACTTTCTAAAGGTTTACCCATTATGTGTATAGTGTTCTGCCTACCTGTAGGCCTACACATCAGAAGAGAGCACTAGATCTCATTATAGATGGTTGTGAGCCTCAATGTGGTTGCTG
GGAATTGAATTTGGGGCTCGTAGAACAGCCAGTGCTCTTAACTGCTGAACCATCTCTCTAGCCCCTAAAATTTAATCTTTTGAGATGTTACTATGTAGCTCTGGCTGTCTTGGAACTCTATGTAGATC
AGGCTATCCCTAAACTCAAGAAATTTTCCCTGGCCCTGCCTCTTGGGTGCTGGTATTGAAGGTTTGCACCCCCATGCCTAACCCAATGAAAATTTTAAAGCACTTTAAAGTGCCAAATATATTTGTTA
GATTTAAATCATGGTTGACATGAGAAATGGGTGGTTCAAGGTAGAGGACAAGGGCTAGATCATCTTGCAGGTGAGAGCTTCATTAGAAAATAGTAATACCACAAACAGTATGGAGGGGTTCTAAAGAG
AACCTTCAACTCAAGACAAGGCAAGGTTCCCCTGAGTTTCCAAAGGAAGGAAGAAGCCTCGTGCCATGAGGCAGTTAAATAGTAGTGCATGCTTTCTACTGATTCTGCAAGGGGAAGTACAACAAGCT
GTCTACACTGTGTAACCTGATCTGAGACACCAACACCACATCTAACAGTGTTTCAAACATGAAAAAATAGTACAGAGGCACTTTCAAGGGCCTAGGGAGATAGTTCAGTAGGTAAGAGTCATGTGCAA
GCATGGGGACTTGAGTTCAAATCCCCAGCACCCTGGTGATGGCCATGCATGTATGCCTGTGACTCTAGCACCAGACAGCAAAGGCAGATTCTAGAGCTCACTAGCCAACCAGCAGCCAAAATGGTAAG
AGTATGGCACAGTGAGATTGTATTTAAAAAACAAAAATAGGAAGTGGGAGAAGAAAGCACTGAGTGTCCTCTGGCCTTCACATGTGCATGCATGCACCCATGTGCAAACATTACACAAGTGTTATTTT
CCAAATTCCTCTTTGGGCCTGGAGACATGGTTAAGATTACTTTCTACTCTTTCAGAGACCCCAGGTTCGATTCCCAGTATTCGCATGGGGTCACACCATCTGTAACTTCAGTTCCAGAGGATCAAATG
GCCTCTTCTGTCTTTGTAGTGTACAGACAAAACACCTATATGTATTAAAACATTGCTTAATTCTACCTTCAAAGGGGTACCATATATTCATAGCCCGTGGCTAATCGTGAAAAGCTTATAAAATTCAC
AGTGCTAATATACTATATAAGAGCATGTACAAACGTTTAGAAGATTTTTGAGGTTATAAGAAAAATACTAGCTGGAGAGATGCTCAGCTTTTAAGAGCACTGCTGCTCCTCCAGATGGACCCAGGTTC
AGTTCCCAGCACCCACATGGCAACTCATGACTCTGCAACTCCAGTTACAAAGGGATCTGATACCCTCACACAGACATACATGCAAACAAAACACCAGTGCACACAACATTAATGTCAATTATAAAAAA
AACCATCTACCATCTAATTTGGGTTGATTAGACTGCTGAGCAGTTAAGAACACCGTGTGCTTTTTCAGAGGTCCTGAGTTCAATGCCCACCTACCATATGGTGGCTCAGGACCATCTATAAAGGGATC
TGATGCCCTCTTCTCTTATGAAGGTATGCATGCAGACAACATTCCTACATTAAATTCATTAAATAAATACTAAAAGCCTGGTAATTTATAAAATATGGGGCAAAATTAAGTGAGGGTGATTTGGGGAA
AAGATTAGTCTAGAACAGCAGTTCTCAGCCTGTAGGTTGCCATTCCTTTGGGGTGGTGGTGGTCAAAGGACCTTTTTGCAGGAGATTGCCTATCAGATAGGCAGTATGTTGGGAGCAGGCAAAAGAAA
CCCACCCTAAATACATCCGCTTCATTTTTCAGACTCCATTTAATCATGGGGAGAGACTAAGTTCAAGCTCCCTAGCCCTAGGGGAGCTGGGGACTTCCTAATAGCTGAATAGCTTCTATTGTAAGGAA
ACAGTTGTCTGAGTCCAAACAACTCAAGAACAACTCCATCTTGTTGGCAGGGTCATTACTAAGTTCATGTTCCCGGGTCCAGGAACCTACTCCTAACCTGTTTGGTGAAAACTCCCTTGCTCAACCCC
TTGTGTCAAAATATGGTAGAGCAGTGCTACAACCTACCCCGCTCCCCCTTGGTTTGTGGTCTTGTCCTTTAAATATGTTGTACAATTTCCCTTCAGGATGCAGTTCAGCTTCTGAGTCTGTTCTTTGG
CTGTGATTGATCAGTAGTGGCTTAATTACAATAAATGTTTTTCATCTGC

hide sequence


Protein RefSeqs	NP_001101935	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83194	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052581.2
	ENSRNOP00000086513.1
	ENSRNOP00000101280

RefSeq Acc Id:

NP_001101935 ⟸ NM_001108465

- UniProtKB:

D4AEI6 (UniProtKB/TrEMBL), A6KS58 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAHLKIHGLVQIRSTNRSKHTRASQWKEAVIEIVERKQKVNLVVSFKLEERRRVFQLGDNVTGVVVSGELGLYHLDLTLRDDTSLLIDKLSSADVEHLKSFLDSSTPCESQQPMESMSNQDTLEISDP
FFRENQDVVCVSLNTALESGTLLSRKMPLCMSNTTGSHTEKKRGEKQGRKRKTEPSPSTVEVTTKDILKENNPEQKKKSRRYYSRNRGGKAEKAVALREQEKRNNWKLEPAFSSKVYGKSTLDGTVLP
IATCSDDRDLSIFGLEIITHNGIQPPPDNYLKQLKREGFPNLGNTCYMNSILQSVFGIPTFAKDLLTQGIPWEKVSYDDLIMPLSQLLVLKDIRDIEIKGELLTSVKKSISTVADTFSGNEQNDAHEF
LSLCLDQLKLNMEKVNAMWDTERKNEPTCAGAKRFVCPVGANFEFELHSSIICEGCGEATLKTEVSNYLSIDLHHGTKTHPLSIQKSFDLFFTPEKIEHNCEKCKNKNSVLKYTLRRLPRVLIVHLKR
YQVTTDLLPVKSEQPVEISQYLNISSHCHENRKLPFPLINTPPKGDYDIPNVSPGLMPEIFSQSMSSKKVISESSDPLVLQVGSSVDAEIQSFQIMYEDESEEEQQRGLESGSMLDPELLKTENRVFR
QKISPAPDSMMGDGYSFLPMLCEPMSIQDPGLAEMGLQEVPENPEFKYYGKPDGRTNSELSKLHQNHGGRIKGSYLPASFANMRSSLEDPEKDLSRSSEFEEDDPHSFALGSDESKDEEMGDNLHNYR
LVSVVSHFGSSPNSGHYVSDVYDFQRQAWLLYSDVQVFENPDPSSQENRLHTGYIFFYMHNEIFEELLKKASECKVLSTSKEEKRDIDYFSTLLNGLTYILEEF

hide sequence

Ensembl Acc Id:

ENSRNOP00000052581 ⟸ ENSRNOT00000055721

Ensembl Acc Id:

ENSRNOP00000086513 ⟸ ENSRNOT00000116912

Protein Domains

USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEI6-F1-model_v2	AlphaFold	D4AEI6	1-872	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-60949	BioCyc
Ensembl Genes	ENSRNOG00000015956	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055721.3	UniProtKB/TrEMBL
	ENSRNOT00000116912.1	UniProtKB/TrEMBL
	ENSRNOT00000125774	ENTREZGENE
Gene3D-CATH	2.30.29.180	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_C19ubi-hydrolase_C_CS	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	UCH_N	UniProtKB/TrEMBL
	USP37-like_PH_sf	UniProtKB/TrEMBL
KEGG Report	rno:361495	UniProtKB/TrEMBL
NCBI Gene	361495	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 29	UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/TrEMBL
	UCH_N	UniProtKB/TrEMBL
PhenoGen	Usp29	PhenoGen
PROSITE	UCH_2_1	UniProtKB/TrEMBL
	UCH_2_2	UniProtKB/TrEMBL
	UCH_2_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015956	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A6KS58	ENTREZGENE, UniProtKB/TrEMBL
	D4AEI6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Usp29	ubiquitin specific peptidase 29	LOC102547903	uncharacterized LOC102547903	Data merged from RGD:7509492	737654	PROVISIONAL
2013-12-17	LOC102547903	uncharacterized LOC102547903			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Usp29	ubiquitin specific peptidase 29	Usp29_predicted	ubiquitin specific protease 29 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Usp29_predicted	ubiquitin specific protease 29 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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