Pik3c2b (phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta) - Rat Genome Database

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Gene: Pik3c2b (phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta) Rattus norvegicus
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Symbol: Pik3c2b
Name: phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
RGD ID: 1306541
Description: Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Predicted to be involved in cell migration; intracellular signal transduction; and phosphatidylinositol-3-phosphate biosynthetic process. Predicted to act upstream of or within autophagosome organization and cellular response to starvation. Predicted to be located in cytosol; endocytic vesicle; and nucleus. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human PIK3C2B (phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta); PARTICIPATES IN inositol phosphate metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC289021; nuclear cap binding protein subunit 2; phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta; phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta; phosphoinositide-3-kinase, class 2 beta polypeptide; phosphoinositide-3-kinase, class 2, beta polypeptide
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,046,866 - 47,107,733 (+)NCBIGRCr8
mRatBN7.21344,494,673 - 44,555,663 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,495,050 - 44,555,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,101,804 - 47,160,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,389,909 - 48,448,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,650,489 - 45,709,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,848,939 - 49,909,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,850,189 - 49,911,202 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,919,438 - 54,977,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,954,337 - 46,013,206 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,987,757 - 46,027,587 (+)NCBI
Celera1344,829,361 - 44,887,236 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
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Original Reference(s)
Pik3c2bRatautistic disorder  ISOPIK3C2B (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Pik3c2bRatfamilial adult myoclonic epilepsy 5  ISOPIK3C2B (Homo sapiens)8554872ClinVar Annotator: match by term: Epilepsy more ...ClinVarPMID:28492532
Pik3c2bRatgastrointestinal stromal tumor  ISOPIK3C2B (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Pik3c2bRatHypokalemic Periodic Paralysis, Type 1  ISOPIK3C2B (Homo sapiens)8554872ClinVar Annotator: match by term: Hypokalemic periodic paralysis and type 1ClinVarPMID:28492532
Pik3c2bRatparathyroid carcinoma  ISOPIK3C2B (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Object Symbol
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Original Reference(s)
Pik3c2bRatNeoplasm Metastasis  ISOPIK3C2B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21986133

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Original Reference(s)
Pik3c2bRat1,2-dimethylhydrazine decreases expressionISOPik3c2b (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of PIK3C2B mRNACTDPMID:22206623
Pik3c2bRat17beta-estradiol multiple interactionsISOPIK3C2B (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of PIK3C2B mRNACTDPMID:30165855
Pik3c2bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPIK3C2B (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of PIK3C2B mRNACTDPMID:26238291
Pik3c2bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PIK3C2B mRNACTDPMID:33387578
Pik3c2bRat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:32119087
Pik3c2bRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOPIK3C2B (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of PIK3C2B mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin] results in increased expression of PIK3C2B mRNACTDPMID:28628672
Pik3c2bRat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of PIK3C2B mRNACTDPMID:24780913 and PMID:25825206
Pik3c2bRatacetamide increases expressionEXP 6480464acetamide results in increased expression of PIK3C2B mRNACTDPMID:31881176
Pik3c2bRatafimoxifene multiple interactionsISOPIK3C2B (Homo sapiens)6480464afimoxifene inhibits the reaction [Estrogens results in decreased expression of PIK3C2B mRNA]CTDPMID:21233418
Pik3c2bRatall-trans-retinoic acid decreases expressionISOPIK3C2B (Homo sapiens)6480464Tretinoin results in decreased expression of PIK3C2B mRNACTDPMID:33167477
Pik3c2bRatamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of PIK3C2B mRNACTDPMID:30779732
Pik3c2bRatbenzene-1,2,4-triol decreases expressionISOPIK3C2B (Homo sapiens)6480464hydroxyhydroquinone results in decreased expression of PIK3C2B mRNACTDPMID:39245080
Pik3c2bRatbenzo[a]pyrene decreases expressionISOPIK3C2B (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of PIK3C2B mRNACTDPMID:26238291
Pik3c2bRatbenzo[a]pyrene diol epoxide I decreases expressionISOPIK3C2B (Homo sapiens)64804647 more ...CTDPMID:19150397
Pik3c2bRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of PIK3C2B mRNACTDPMID:25181051 more ...
Pik3c2bRatbisphenol A multiple interactionsISOPIK3C2B (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of PIK3C2B mRNACTDPMID:28628672
Pik3c2bRatbuta-1,3-diene decreases expressionISOPik3c2b (Mus musculus)64804641 and 3-butadiene results in decreased expression of PIK3C2B mRNACTDPMID:29038090
Pik3c2bRatcaptan increases expressionISOPik3c2b (Mus musculus)6480464Captan results in increased expression of PIK3C2B mRNACTDPMID:31558096
Pik3c2bRatCGP 52608 multiple interactionsISOPIK3C2B (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to PIK3C2B gene]CTDPMID:28238834
Pik3c2bRatchenodeoxycholic acid multiple interactionsISOPIK3C2B (Homo sapiens)6480464[Cyclosporine co-treated with Glycochenodeoxycholic Acid co-treated with Deoxycholic Acid co-treated with Chenodeoxycholic Acid co-treated with Glycodeoxycholic Acid co-treated with Glycocholic Acid] results in decreased expression of PIK3C2B mRNA and [nefazodone co-treated with Glycochenodeoxycholic Acid co-treated with Deoxycholic Acid co-treated with Chenodeoxycholic Acid co-treated with Glycodeoxycholic Acid co-treated with Glycocholic Acid] results in decreased expression of PIK3C2B mRNACTDPMID:32152650

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Biological Process
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Original Reference(s)
Pik3c2bRatautophagosome organization acts_upstream_of_or_withinISOPik3c2b (Mus musculus)1624291MGI:1203729 PMID:24098492RGDPMID:24098492
Pik3c2bRatautophagosome organization acts_upstream_of_or_withinIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatcell migration involved_inIBAFB:FBgn0015279 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatcellular response to starvation acts_upstream_of_or_withinIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatcellular response to starvation acts_upstream_of_or_withinISOPik3c2b (Mus musculus)1624291MGI:1203729 PMID:24098492RGDPMID:24098492
Pik3c2bRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Pik3c2bRatmacroautophagy acts_upstream_of_or_withinISOPik3c2b (Mus musculus)1624291MGI:1203729 PMID:24098492RGDPMID:24098492
Pik3c2bRatmacroautophagy acts_upstream_of_or_withinIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatphosphatidylinositol 3-kinase/protein kinase B signal transduction involved_inIBAFB:FBgn0015279 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatphosphatidylinositol 3-kinase/protein kinase B signal transduction acts_upstream_of_or_withinISOPik3c2b (Mus musculus)1624291 PMID:17875942RGDPMID:17875942
Pik3c2bRatphosphatidylinositol 3-kinase/protein kinase B signal transduction acts_upstream_of_or_withinIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatphosphatidylinositol phosphate biosynthetic process involved_inIEAInterPro:IPR0154331600115GO_REF:0000002InterProGO_REF:0000002
Pik3c2bRatphosphatidylinositol-3-phosphate biosynthetic process involved_inIBAMGI:1203729 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatphosphatidylinositol-3-phosphate biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatphosphatidylinositol-3-phosphate biosynthetic process acts_upstream_of_or_withinISOPik3c2b (Mus musculus)1624291MGI:1203729 PMID:24098492RGDPMID:24098492
Pik3c2bRatphosphatidylinositol-mediated signaling involved_inIBAPANTHER:PTN000005673 and dictyBase:DDB_G02787271600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Original Reference(s)
Pik3c2bRatcytoplasm is_active_inIBAFB:FBgn0004373 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatcytosol located_inISOPIK3C2B (Homo sapiens)1624291 PMID:9830063RGDGO_REF:0000052 and PMID:9830063
Pik3c2bRatcytosol located_inIEAUniProtKB:A2RUF7 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatcytosol located_inIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatendocytic vesicle located_inIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatendocytic vesicle located_inISOPik3c2b (Mus musculus)1624291 PMID:17875942RGDPMID:17875942
Pik3c2bRatintracellular membrane-bounded organelle located_inISOPIK3C2B (Homo sapiens)1624291 PMID:9830063RGDPMID:9830063
Pik3c2bRatintracellular membrane-bounded organelle located_inIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatnuclear membrane located_inIEAUniProtKB:A2RUF7 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatnuclear membrane located_inISOPIK3C2B (Homo sapiens)1624291 RGDGO_REF:0000052
Pik3c2bRatnuclear membrane located_inIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatnucleoplasm located_inIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatnucleoplasm located_inIEAUniProtKB:A2RUF7 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatnucleoplasm located_inISOPIK3C2B (Homo sapiens)1624291 RGDGO_REF:0000052
Pik3c2bRatplasma membrane is_active_inIBAPANTHER:PTN000005674 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatplasma membrane located_inIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatplasma membrane located_inISOPIK3C2B (Homo sapiens)1624291 PMID:9830063RGDPMID:9830063
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Molecular Function
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Original Reference(s)
Pik3c2bRat1-phosphatidylinositol-3-kinase activity enablesISOPIK3C2B (Homo sapiens)1624291 PMID:10805725 more ...RGDPMID:10805725 more ...
Pik3c2bRat1-phosphatidylinositol-3-kinase activity enablesIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRat1-phosphatidylinositol-3-kinase activity enablesIBAFB:FBgn0015278 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRat1-phosphatidylinositol-4-phosphate 3-kinase activity enablesISOPIK3C2B (Homo sapiens)1624291 PMID:10805725 and PMID:9830063RGDPMID:10805725 and PMID:9830063
Pik3c2bRat1-phosphatidylinositol-4-phosphate 3-kinase activity enablesIEAUniProtKB:O00750 and ensembl:ENSP000005072221600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRat1-phosphatidylinositol-4-phosphate 3-kinase activity enablesIEAEC:2.7.1.1541600115GO_REF:0000003UniProtGO_REF:0000003
Pik3c2bRat1-phosphatidylinositol-4-phosphate 3-kinase activity enablesIBAFB:FBgn0015278 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pik3c2bRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Pik3c2bRatkinase activity enablesIEAInterPro:IPR0189361600115GO_REF:0000002InterProGO_REF:0000002
Pik3c2bRatkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Pik3c2bRatlipid kinase activity enablesIEAUniProtKB:E9QAN8 and ensembl:ENSMUSP000000769111600115GO_REF:0000107EnsemblGO_REF:0000107
Pik3c2bRatlipid kinase activity enablesISOPik3c2b (Mus musculus)1624291 PMID:17875942RGDPMID:17875942
Pik3c2bRatphosphatidylinositol binding enablesIEAInterPro:IPR001683 and InterPro:IPR0368711600115GO_REF:0000002InterProGO_REF:0000002
Pik3c2bRatphosphatidylinositol kinase activity enablesIEAARBA:ARBA000334941600115GO_REF:0000117UniProtGO_REF:0000117
Pik3c2bRatprotein binding enablesISOPIK3C2B (Homo sapiens)1624291UniProtKB:P00533 more ...RGDPMID:10805725 more ...
Pik3c2bRatprotein binding enablesISOPik3c2b (Mus musculus)1624291PR:Q9Z0R4 PMID:17875942RGDPMID:17875942
Pik3c2bRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
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Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Pik3c2bRatinositol phosphate metabolic pathway  IEA 6907045 KEGGrno:00562
Pik3c2bRatphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:16857245   PMID:17875942   PMID:24098492   PMID:29492791  



Pik3c2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,046,866 - 47,107,733 (+)NCBIGRCr8
mRatBN7.21344,494,673 - 44,555,663 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,495,050 - 44,555,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,101,804 - 47,160,253 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,389,909 - 48,448,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,650,489 - 45,709,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,848,939 - 49,909,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,850,189 - 49,911,202 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,919,438 - 54,977,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,954,337 - 46,013,206 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,987,757 - 46,027,587 (+)NCBI
Celera1344,829,361 - 44,887,236 (+)NCBICelera
Cytogenetic Map13q13NCBI
PIK3C2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,422,633 - 204,494,805 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,422,628 - 204,494,805 (-)EnsemblGRCh38hg38GRCh38
GRCh371204,391,761 - 204,463,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,658,384 - 202,726,097 (-)NCBINCBI36Build 36hg18NCBI36
Build 341201,123,420 - 201,191,131NCBI
Celera1177,527,172 - 177,594,672 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,556,880 - 175,624,580 (-)NCBIHuRef
CHM1_11205,815,608 - 205,882,878 (-)NCBICHM1_1
T2T-CHM13v2.01203,687,208 - 203,759,206 (-)NCBIT2T-CHM13v2.0
Pik3c2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,973,410 - 133,036,429 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,973,405 - 133,036,425 (+)EnsemblGRCm39 Ensembl
GRCm381133,045,672 - 133,108,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,045,667 - 133,108,687 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,942,589 - 135,005,265 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,873,558 - 134,934,994 (+)NCBIMGSCv36mm8
Celera1135,655,035 - 135,720,282 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.75NCBI
Pik3c2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,247,382 - 40,317,556 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,247,690 - 40,317,556 (-)NCBIChiLan1.0ChiLan1.0
PIK3C2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,882,135 - 44,960,492 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,847,333 - 44,920,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,024,889 - 180,096,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,313,233 - 184,384,454 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,313,233 - 184,384,454 (-)Ensemblpanpan1.1panPan2
PIK3C2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138974,248 - 1,016,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38975,749 - 1,027,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,069,379 - 1,134,940 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038969,737 - 1,035,426 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38969,759 - 1,035,859 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.138966,025 - 1,031,937 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,357,807 - 1,423,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,557,935 - 1,623,716 (-)NCBIUU_Cfam_GSD_1.0
Pik3c2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,080,285 - 71,142,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567314,898 - 378,045 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936567314,957 - 377,544 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIK3C2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,073,738 - 65,154,538 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,073,728 - 65,154,861 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,409,230 - 71,490,324 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIK3C2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,855,712 - 24,926,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,855,766 - 24,926,346 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,615,537 - 25,686,367 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pik3c2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,554,926 - 6,612,831 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,543,665 - 6,612,833 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pik3c2b
344 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
13 54940588 54940589 C T snv Crl:SD (UDEL) View more Information
13 54943575 54943576 A C snv F344/Stm (KyushuU) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
13 49871598 49871599 C T snv CDR View more Information

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:98
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000042125
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat

1 to 10 of 35 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000042125   ⟹   ENSRNOP00000051488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,495,050 - 44,555,612 (+)Ensembl
Rnor_6.0 Ensembl1349,850,189 - 49,908,350 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090170   ⟹   ENSRNOP00000071933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,495,050 - 44,555,612 (+)Ensembl
Rnor_6.0 Ensembl1349,870,976 - 49,911,202 (+)Ensembl
RefSeq Acc Id: NM_001105951   ⟹   NP_001099421
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,047,127 - 47,105,208 (+)NCBI
mRatBN7.21344,495,050 - 44,553,137 (+)NCBI
Rnor_6.01349,850,189 - 49,908,350 (+)NCBI
Rnor_5.01354,919,438 - 54,977,791 (+)NCBI
RGSC_v3.41345,954,337 - 46,013,206 (+)RGD
Celera1344,829,361 - 44,887,236 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249754   ⟹   XP_006249816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,047,074 - 47,107,733 (+)NCBI
mRatBN7.21344,494,993 - 44,555,663 (+)NCBI
Rnor_6.01349,850,123 - 49,909,404 (+)NCBI
Rnor_5.01354,919,438 - 54,977,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249756   ⟹   XP_006249818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,068,366 - 47,107,733 (+)NCBI
mRatBN7.21344,516,243 - 44,555,663 (+)NCBI
Rnor_6.01349,870,951 - 49,909,404 (+)NCBI
Rnor_5.01354,919,438 - 54,977,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063272073   ⟹   XP_063128143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,047,074 - 47,107,733 (+)NCBI
RefSeq Acc Id: XM_063272074   ⟹   XP_063128144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,046,866 - 47,107,733 (+)NCBI
RefSeq Acc Id: XM_063272075   ⟹   XP_063128145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,047,073 - 47,105,214 (+)NCBI
RefSeq Acc Id: NP_001099421   ⟸   NM_001105951
- UniProtKB: D3ZVF3 (UniProtKB/TrEMBL),   A6IC68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249816   ⟸   XM_006249754
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K1Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249818   ⟸   XM_006249756
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K1Q0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071933   ⟸   ENSRNOT00000090170
Ensembl Acc Id: ENSRNOP00000051488   ⟸   ENSRNOT00000042125
C2   C2 PI3K-type   PI3K-RBD   PI3K/PI4K catalytic   PIK helical   PX

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVF3-F1-model_v2 AlphaFold D3ZVF3 1-1621 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698819
Promoter ID:EPDNEW_R9343
Type:initiation region
Name:Pik3c2b_1
Description:phosphatidylinositol-4-phosphate 3-kinase, catalytic subunittype 2 beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01349,850,190 - 49,850,250EPDNEW


1 to 40 of 62 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-18294 BioCyc
Ensembl Genes ENSRNOG00000029938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042125 ENTREZGENE
  ENSRNOT00000042125.5 UniProtKB/TrEMBL
  ENSRNOT00000090170 ENTREZGENE
  ENSRNOT00000090170.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/TrEMBL
  1.25.40.70 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 4 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/TrEMBL
  PI3/4_kinase_CS UniProtKB/TrEMBL
  PI3K_accessory_sf UniProtKB/TrEMBL
  PI3K_C2 UniProtKB/TrEMBL
  PI3K_ras-bd UniProtKB/TrEMBL
  PI_Kinase UniProtKB/TrEMBL
  PInositide-3_kin_accessory_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  PX_PI3K_C2_beta UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:289021 UniProtKB/TrEMBL
NCBI Gene 289021 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 3-KINASE C2 DOMAIN-CONTAINING SUBUNIT BETA UniProtKB/TrEMBL
  PTHR10048 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PI3_PI4_kinase UniProtKB/TrEMBL
  PI3K_C2 UniProtKB/TrEMBL
  PI3K_rbd UniProtKB/TrEMBL
  PI3Ka UniProtKB/TrEMBL
PhenoGen Pik3c2b PhenoGen
PROSITE PI3_4_KINASE_1 UniProtKB/TrEMBL
1 to 40 of 62 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-11 Pik3c2b  phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta  Pik3c2b  nuclear cap binding protein subunit 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Pik3c2b  nuclear cap binding protein subunit 2  Pik3c2b  nuclear cap binding protein subunit 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Pik3c2b  nuclear cap binding protein subunit 2  Pik3c2b  phosphoinositide-3-kinase, class 2, beta polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pik3c2b  phosphoinositide-3-kinase, class 2, beta polypeptide   Pik3c2b_predicted  phosphoinositide-3-kinase, class 2, beta polypeptide (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pik3c2b_predicted  phosphoinositide-3-kinase, class 2, beta polypeptide (predicted)      Symbol and Name status set to approved 70820 APPROVED