Pak6 (p21 (RAC1) activated kinase 6) - Rat Genome Database

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Gene: Pak6 (p21 (RAC1) activated kinase 6) Rattus norvegicus
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Symbol: Pak6
Name: p21 (RAC1) activated kinase 6
RGD ID: 1306213
Description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cellular response to starvation; intracellular signal transduction; and regulation of MAPK cascade. Predicted to act upstream of or within learning or memory; locomotory behavior; and neuron projection morphogenesis. Predicted to be located in cell junction; fibrillar center; and nucleoplasm. Predicted to be active in cytoplasm and postsynaptic density. Human ortholog(s) of this gene implicated in clear cell renal cell carcinoma. Orthologous to several human genes including PAK6 (p21 (RAC1) activated kinase 6); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; renal cell carcinoma pathway; T cell receptor signaling pathway; INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296078; p21 (CDKN1A)-activated kinase 6; p21 protein (Cdc42/Rac)-activated kinase 6; p21-activated kinase 6; serine/threonine-protein kinase PAK 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,092,576 - 126,128,320 (+)NCBIGRCr8
mRatBN7.23105,638,248 - 105,674,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,638,653 - 105,672,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,312,014 - 109,345,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,907,575 - 117,941,432 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,567,941 - 115,601,794 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,442,175 - 110,486,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,442,637 - 110,487,526 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,987,226 - 117,027,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,141,150 - 105,191,676 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,080,467 - 105,088,577 (+)NCBI
Celera3104,554,473 - 104,587,411 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Pak6Ratclear cell renal cell carcinoma disease_progressionISORGD:131470313506722 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
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Original Reference(s)
Pak6RatBloom syndrome  ISORGD:13147038554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Pak6Ratcolorectal cancer  ISORGD:13147038554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
Pak6Ratkeratoconus  ISORGD:13147038554872ClinVar Annotator: match by term: KeratoconusClinVar 
Pak6Ratmosaic variegated aneuploidy syndrome 1  ISORGD:13147038554872ClinVar Annotator: match by term: Mosaic variegated aneuploidy syndrome 1ClinVarPMID:28492532
Object Symbol
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Original Reference(s)
Pak6RatProstatic Neoplasms  ISORGD:131470311554173CTD Direct Evidence: marker/mechanismCTDPMID:18642328

1 to 20 of 86 rows

  
Object Symbol
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Original Reference(s)
Pak6Rat17beta-estradiol multiple interactionsISORGD:13147036480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of PAK6 mRNA; Estradiol inhibits the more ...CTDPMID:29389661|PMID:30165855|PMID:32088792
Pak6Rat2,2',5,5'-tetrachlorobiphenyl decreases expressionEXP 64804642,5,2',5'-tetrachlorobiphenyl results in decreased expression of PAK6 mRNACTDPMID:23829299
Pak6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13147046480464Tetrachlorodibenzodioxin affects the expression of PAK6 mRNACTDPMID:21570461
Pak6Rat3,4-methylenedioxymethamphetamine increases expressionISORGD:13147046480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of PAK6 mRNACTDPMID:20188158|PMID:26251327
Pak6Rat3-methylcholanthrene multiple interactionsISORGD:13147046480464[Methylcholanthrene co-treated with Tetradecanoylphorbol Acetate] results in increased expression of PAK6 mRNACTDPMID:23519560
Pak6Rat4,4'-sulfonyldiphenol multiple interactionsISORGD:13147036480464bisphenol S inhibits the reaction [ESR1 protein binds to PAK6 protein]CTDPMID:29389661
Pak6Rat4,4'-sulfonyldiphenol affects methylationISORGD:13147046480464bisphenol S affects the methylation of PAK6 geneCTDPMID:31683443
Pak6Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of PAK6 mRNACTDPMID:24780913
Pak6Ratacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of PAK6 mRNACTDPMID:28959563
Pak6Ratafimoxifene decreases response to substanceISORGD:13147036480464PAK6 results in decreased susceptibility to afimoxifeneCTDPMID:21233418
Pak6Ratall-trans-retinoic acid multiple interactionsISORGD:13147046480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PAK6 mRNACTDPMID:36189433
Pak6Ratall-trans-retinoic acid decreases expressionISORGD:13147046480464Tretinoin results in decreased expression of PAK6 mRNACTDPMID:36189433
Pak6Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of PAK6 mRNACTDPMID:30779732
Pak6Rataristolochic acid A increases expressionISORGD:13147036480464aristolochic acid I results in increased expression of PAK6 mRNACTDPMID:33212167
Pak6Ratarsenite(3-) increases expressionISORGD:13147046480464arsenite results in increased expression of PAK6 mRNACTDPMID:33053406
Pak6Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of PAK6 geneCTDPMID:35440735
Pak6Ratbenzo[a]pyrene decreases expressionISORGD:13147046480464Benzo(a)pyrene results in decreased expression of PAK6 mRNACTDPMID:19770486
Pak6Ratbenzo[a]pyrene increases expressionISORGD:13147036480464Benzo(a)pyrene results in increased expression of PAK6 mRNACTDPMID:35870112
Pak6Ratbenzo[a]pyrene affects methylationISORGD:13147036480464Benzo(a)pyrene affects the methylation of PAK6 5' UTRCTDPMID:27901495
Pak6Ratbenzo[a]pyrene decreases methylationISORGD:13147036480464Benzo(a)pyrene results in decreased methylation of PAK6 exonCTDPMID:27901495

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Biological Process

  
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Original Reference(s)
Pak6Ratcellular response to starvation involved_inIBACGD:CAL0000192143|CGD:CAL0000198103|PANTHER:PTN000685129|dictyBase:DDB_G0269166|dictyBase:DDB_G0269696|dictyBase:DDB_G02764591600115GO_REF:0000033GO_CentralGO_REF:0000033
Pak6Ratintracellular signal transduction involved_inIBACGD:CAL0000187689|CGD:CAL0000198103|FB:FBgn0010909|FB:FBgn0261456|MGI:1928487|MGI:1929004|PANTHER:PTN001969365|RGD:621590|SGD:S000000999|TAIR:locus:2026459|UniProtKB:O95819|UniProtKB:Q13043|UniProtKB:Q13188|UniProtKB:Q9H2K8|UniProtKB:Q9UKE5|WB:WBGene000031441600115GO_REF:0000033GO_CentralGO_REF:0000033
Pak6Ratlearning acts_upstream_of_or_withinISORGD:13147041624291MGI:1920334 PMID:18675265, PMID:23593460RGDPMID:18675265|PMID:23593460
Pak6Ratlocomotory behavior acts_upstream_of_or_withinISORGD:13147041624291MGI:1920334 PMID:18675265, PMID:23593460RGDPMID:18675265|PMID:23593460
Pak6Ratmemory acts_upstream_of_or_withinISORGD:13147041624291MGI:1920334 PMID:18675265, PMID:23593460RGDPMID:18675265|PMID:23593460
Pak6Ratneuron projection arborization acts_upstream_of_or_withinISORGD:13147041624291 PMID:29117290RGDPMID:29117290
Pak6Ratneuron projection extension acts_upstream_of_or_withinISORGD:13147041624291 PMID:29117290RGDPMID:29117290
Pak6Ratregulation of MAPK cascade involved_inIBAFB:FBgn0025743|MGI:1339975|MGI:1349394|MGI:1355329|MGI:1915919|MGI:1928487|PANTHER:PTN001969365|PomBase:SPBC1604.14c|UniProtKB:O95819|UniProtKB:Q13153|UniProtKB:Q8N4C8|UniProtKB:Q9H2K8|UniProtKB:Q9UKE51600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
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Original Reference(s)
Pak6Ratcell junction located_inISORGD:1314703|UniProtKB:Q9NQU5-1|UniProtKB:Q9NQU5-21624291 RGDGO_REF:0000052
Pak6Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Pak6Ratcytoplasm is_active_inIBAFB:FBgn0010909|FB:FBgn0025743|FB:FBgn0044826|FB:FBgn0261456|FB:FBgn0267698|MGI:1339975|MGI:1920334|MGI:1928487|MGI:1929004|PANTHER:PTN000684825|PomBase:SPAC1F5.09c|PomBase:SPBC1604.14c|RGD:3250|RGD:3251|RGD:61953|SGD:S000000999|SGD:S000005242|UniProtKB:A0A8J1JBA5|UniProtKB:O95819|UniProtKB:Q13043|UniProtKB:Q13153|UniProtKB:Q13177|UniProtKB:Q13188|UniProtKB:Q8N4C8|UniProtKB:Q9P286|UniProtKB:Q9UKE5|WB:WBGene00002201|WB:WBGene00003911|dictyBase:DDB_G0267450|dictyBase:DDB_G0269166|dictyBase:DDB_G0276459|dictyBase:DDB_G02841811600115GO_REF:0000033GO_CentralGO_REF:0000033
Pak6Ratfibrillar center located_inISORGD:1314703|UniProtKB:Q9NQU5-1|UniProtKB:Q9NQU5-21624291 RGDGO_REF:0000052
Pak6Ratnucleoplasm located_inISORGD:1314703|UniProtKB:Q9NQU5-1|UniProtKB:Q9NQU5-21624291 RGDGO_REF:0000052
Pak6Ratpostsynaptic density is_active_inISORGD:13147041624291 PMID:25211037RGDPMID:25211037

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
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Original Reference(s)
Pak6RatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Pak6RatATP binding enablesIEAInterPro:IPR000719|InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
Pak6Ratkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Pak6Ratnucleotide binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Pak6Ratprotein binding enablesISORGD:13147031624291UniProtKB:O75031|UniProtKB:P60953|UniProtKB:P62258|UniProtKB:Q5S007|UniProtKB:Q96L33|UniProtKB:Q9H4E5 PMID:20936779, PMID:24510904, PMID:24947832, PMID:25416956, PMID:28514442, PMID:31515488, PMID:31980649, PMID:32296183, PMID:32707033, PMID:33961781, PMID:36931259RGDPMID:20936779|PMID:24510904|PMID:24947832|PMID:25416956|PMID:28514442|PMID:31515488|PMID:31980649|PMID:32296183|PMID:32707033|PMID:33961781|PMID:36931259
Pak6Ratprotein kinase activity enablesIEAInterPro:IPR0007191600115GO_REF:0000002InterProGO_REF:0000002
Pak6Ratprotein serine/threonine kinase activity enablesIEAUniProtKB-KW:KW-07231600115GO_REF:0000043UniProtGO_REF:0000043
Pak6Ratprotein serine/threonine kinase activity enablesIEAEC:2.7.11.11600115GO_REF:0000003UniProtGO_REF:0000003
Pak6Ratprotein serine/threonine kinase activity enablesIEAInterPro:IPR0339231600115GO_REF:0000002InterProGO_REF:0000002
Pak6Ratprotein serine/threonine kinase activity enablesIBACGD:CAL0000192143|FB:FBgn0025743|FB:FBgn0044826|FB:FBgn0261456|FB:FBgn0267698|MGI:1339975|MGI:1339984|MGI:1349394|MGI:1355329|MGI:1920334|PANTHER:PTN000684825|PomBase:SPAC1F5.09c|PomBase:SPBC1604.14c|RGD:3250|RGD:3251|RGD:621590|SGD:S000000999|SGD:S000005242|UniProtKB:O75914|UniProtKB:O95819|UniProtKB:O96013|UniProtKB:Q13043|UniProtKB:Q13153|UniProtKB:Q13177|UniProtKB:Q13188|UniProtKB:Q8N4C8|UniProtKB:Q9H2K8|UniProtKB:Q9UKE5|WB:WBGene00003144|dictyBase:DDB_G0269166|dictyBase:DDB_G02764591600115GO_REF:0000033GO_CentralGO_REF:0000033
Pak6Rattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
1 to 11 of 11 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pak6Ratepidermal growth factor/neuregulin signaling pathway   IEA 6907045 KEGGrno:04012
Pak6Ratrenal cell carcinoma pathway   IEA 6907045 KEGGrno:05211
Pak6RatT cell receptor signaling pathway  IEA 6907045 KEGGrno:04660

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Prognostic significance of p21-activated kinase 6 expression in patients with clear cell renal cell carcinoma. Liu W, etal., Ann Surg Oncol. 2014 Dec;21 Suppl 4:S575-83. doi: 10.1245/s10434-014-3680-z. Epub 2014 Apr 9.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:18675265   PMID:21541790   PMID:23593460   PMID:25468996   PMID:29117290   PMID:32679145  



Pak6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,092,576 - 126,128,320 (+)NCBIGRCr8
mRatBN7.23105,638,248 - 105,674,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,638,653 - 105,672,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,312,014 - 109,345,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,907,575 - 117,941,432 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,567,941 - 115,601,794 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,442,175 - 110,486,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,442,637 - 110,487,526 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,987,226 - 117,027,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,141,150 - 105,191,676 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,080,467 - 105,088,577 (+)NCBI
Celera3104,554,473 - 104,587,411 (+)NCBICelera
Cytogenetic Map3q35NCBI
PAK6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,239,063 - 40,277,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,217,428 - 40,277,487 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,531,264 - 40,569,688 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,319,368 - 38,356,979 (+)NCBINCBI36Build 36hg18NCBI36
Build 341538,319,367 - 38,356,979NCBI
Celera1517,275,604 - 17,335,680 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,352,605 - 17,412,646 (+)NCBIHuRef
CHM1_11540,629,582 - 40,689,654 (+)NCBICHM1_1
T2T-CHM13v2.01538,045,955 - 38,084,404 (+)NCBIT2T-CHM13v2.0
Pak6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,493,531 - 118,528,501 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,493,784 - 118,528,501 (+)EnsemblGRCm39 Ensembl
GRCm382118,663,045 - 118,698,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,663,303 - 118,698,020 (+)EnsemblGRCm38mm10GRCm38
MGSCv372118,489,313 - 118,523,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,354,744 - 118,388,677 (+)NCBIMGSCv36mm8
Celera2119,818,133 - 119,852,648 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.41NCBI
Pak6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,178,524 - 7,212,053 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,190,584 - 7,211,705 (+)NCBIChiLan1.0ChiLan1.0
PAK6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,473,050 - 29,511,489 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,624,528 - 33,662,919 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,173,171 - 19,211,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,441,567 - 37,466,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,453,802 - 37,465,119 (+)Ensemblpanpan1.1panPan2
PAK6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,424,410 - 7,462,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,425,948 - 7,461,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,478,897 - 7,516,220 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,553,994 - 7,588,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,577,691 - 7,588,086 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,475,297 - 7,512,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,581,248 - 7,618,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,709,827 - 7,747,189 (+)NCBIUU_Cfam_GSD_1.0
Pak6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,863,845 - 85,899,290 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,713,406 - 3,747,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,692,058 - 3,747,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAK6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,039,318 - 131,076,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,039,313 - 131,077,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,145,830 - 146,151,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAK6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,737,848 - 42,798,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,737,613 - 42,750,248 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,187,124 - 98,226,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pak6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,549,630 - 7,584,567 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,549,847 - 7,583,409 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pak6
168 total Variants

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:87
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000010471
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 40 rows
RH131540  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83126,128,083 - 126,128,296 (+)Marker Load Pipeline
mRatBN7.23105,674,162 - 105,674,375 (+)MAPPERmRatBN7.2
Rnor_6.03110,487,108 - 110,487,320NCBIRnor6.0
Rnor_5.03117,028,025 - 117,028,237UniSTSRnor5.0
RGSC_v3.43105,192,868 - 105,193,080UniSTSRGSC3.4
Celera3104,588,569 - 104,588,781UniSTS
RH 3.4 Map3913.5UniSTS
Cytogenetic Map3q35UniSTS
RH131877  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23105,651,864 - 105,652,073 (+)MAPPERmRatBN7.2
Rnor_6.03110,464,920 - 110,465,128NCBIRnor6.0
Rnor_5.03117,005,785 - 117,005,993UniSTSRnor5.0
RGSC_v3.43105,170,530 - 105,170,738UniSTSRGSC3.4
Celera3104,566,345 - 104,566,553UniSTS
RH 3.4 Map3914.79UniSTS
Cytogenetic Map3q35UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 49 113 81 80 49 25 49 6 206 95 93 45 60 31



Ensembl Acc Id: ENSRNOT00000010471   ⟹   ENSRNOP00000010471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3105,638,653 - 105,672,975 (+)Ensembl
Rnor_6.0 Ensembl3110,442,637 - 110,485,702 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089434   ⟹   ENSRNOP00000075254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3110,466,790 - 110,487,526 (+)Ensembl
RefSeq Acc Id: NM_001106498   ⟹   NP_001099968
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,092,576 - 126,126,894 (+)NCBI
mRatBN7.23105,638,653 - 105,672,975 (+)NCBI
Rnor_6.03110,442,637 - 110,485,702 (+)NCBI
Rnor_5.03116,987,226 - 117,027,426 (+)NCBI
RGSC_v3.43105,141,150 - 105,191,676 (+)RGD
Celera3104,554,473 - 104,587,411 (+)RGD
Sequence:
RefSeq Acc Id: XM_039104547   ⟹   XP_038960475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,105,436 - 126,128,320 (+)NCBI
mRatBN7.23105,652,018 - 105,674,399 (+)NCBI
Protein RefSeqs NP_001099968 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960475 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79867 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010471.5
  ENSRNOP00000099466
RefSeq Acc Id: NP_001099968   ⟸   NM_001106498
- UniProtKB: D3ZQ51 (UniProtKB/TrEMBL),   A6HPB6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075254   ⟸   ENSRNOT00000089434
Ensembl Acc Id: ENSRNOP00000010471   ⟸   ENSRNOT00000010471
RefSeq Acc Id: XP_038960475   ⟸   XM_039104547
- Peptide Label: isoform X1
CRIB   Protein kinase

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQ51-F1-model_v2 AlphaFold D3ZQ51 1-681 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48243 BioCyc
Ensembl Genes ENSRNOG00000007925 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010471.7 UniProtKB/TrEMBL
  ENSRNOT00000141685 ENTREZGENE
Gene3D-CATH 3.90.810.10 UniProtKB/TrEMBL
  Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro CRIB_dom_sf UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  PAK3-like UniProtKB/TrEMBL
  PAK6 UniProtKB/TrEMBL
  PAK_BD UniProtKB/TrEMBL
  PAK_box_Rho-bd UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
KEGG Report rno:296078 UniProtKB/TrEMBL
NCBI Gene 296078 ENTREZGENE
PANTHER NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE SAMKA-RELATED-RELATED UniProtKB/TrEMBL
Pfam PBD UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PhenoGen Pak6 PhenoGen
PROSITE CRIB UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007925 RatGTEx
SMART PBD UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A6HPB6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQ51 ENTREZGENE, UniProtKB/TrEMBL
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-12 Pak6  p21 (RAC1) activated kinase 6  Pak6  p21 protein (Cdc42/Rac)-activated kinase 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-05-27 Pak6  p21 protein (Cdc42/Rac)-activated kinase 6  Pak6  p21 (CDKN1A)-activated kinase 6   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pak6  p21 (CDKN1A)-activated kinase 6   Pak6_predicted  p21 (CDKN1A)-activated kinase 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pak6_predicted  p21 (CDKN1A)-activated kinase 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED