Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) - Rat Genome Database

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Gene: Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) Rattus norvegicus
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Symbol: Dnajb4
Name: DnaJ heat shock protein family (Hsp40) member B4
RGD ID: 1305826
Description: Predicted to enable ATPase activator activity; protein-folding chaperone binding activity; and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and negative regulation of transcription by RNA polymerase II. Predicted to be located in Z disc; nucleoplasm; and plasma membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in congenital myopathy 21. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog, subfamily B, member 4; DnaJ (Hsp40) homolog, subfamily B, member 4-like; dnaJ homolog subfamily B member 4; LOC295549
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,790,296 - 243,819,042 (-)NCBIGRCr8
mRatBN7.22241,129,346 - 241,159,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,944,119 - 248,972,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,831,137 - 246,859,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,730,451 - 241,759,204 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,394,692 - 257,425,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,394,818 - 257,425,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,071,439 - 276,102,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,663,022 - 250,685,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,065,020 - 233,093,753 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Ratcongenital myopathy 21  ISODNAJB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myopathy 21 with early respiratory failureClinVarPMID:36264506 and PMID:36344539
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Ratdistal myopathy  ISSDnajb4 (Mus musculus)13592920 MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Ratcongenital myopathy 21  ISODNAJB4 (Homo sapiens)7240710 OMIM 

1 to 20 of 214 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of DNAJB4 mRNA]CTDPMID:31150632
Dnajb4Rat(-)-epigallocatechin 3-gallate multiple interactionsISODNAJB4 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of DNAJB4 mRNACTDPMID:22079256
Dnajb4Rat(E)-cinnamyl alcohol increases expressionISODNAJB4 (Homo sapiens)6480464cinnamyl alcohol results in increased expression of DNAJB4 mRNACTDPMID:23999411
Dnajb4Rat1,2-dimethylhydrazine decreases expressionISODnajb4 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of DNAJB4 mRNACTDPMID:22206623
Dnajb4Rat1,3-benzothiazole-2-thiol increases expressionISODNAJB4 (Homo sapiens)6480464captax results in increased expression of DNAJB4 mRNACTDPMID:23999411 and PMID:27965148
Dnajb4Rat1,4-phenylenediamine increases expressionISODNAJB4 (Homo sapiens)64804644-phenylenediamine results in increased expression of DNAJB4 mRNACTDPMID:23999411 and PMID:27965148
Dnajb4Rat1-chloro-2,4-dinitrobenzene increases expressionISODNAJB4 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of DNAJB4 mRNACTDPMID:23999411 and PMID:27965148
Dnajb4Rat1-chloro-2,4-dinitrobenzene multiple interactionsISODNAJB4 (Homo sapiens)6480464NFE2L2 protein affects the reaction [Dinitrochlorobenzene results in increased expression of DNAJB4 mRNA]CTDPMID:27965148
Dnajb4Rat1-fluoro-2,4-dinitrobenzene increases expressionISODNAJB4 (Homo sapiens)6480464Dinitrofluorobenzene results in increased expression of DNAJB4 mRNACTDPMID:23999411
Dnajb4Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of DNAJB4 mRNACTDPMID:20551477
Dnajb4Rat17alpha-ethynylestradiol increases expressionISODnajb4 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of DNAJB4 mRNACTDPMID:17942748
Dnajb4Rat17alpha-ethynylestradiol multiple interactionsISODnajb4 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DNAJB4 mRNACTDPMID:17942748
Dnajb4Rat17alpha-ethynylestradiol affects expressionISODnajb4 (Mus musculus)6480464Ethinyl Estradiol affects the expression of DNAJB4 mRNACTDPMID:17555576
Dnajb4Rat17beta-estradiol increases expressionISODNAJB4 (Homo sapiens)6480464Estradiol results in increased expression of DNAJB4 mRNACTDPMID:20106945
Dnajb4Rat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISODnajb4 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
Dnajb4Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODnajb4 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DNAJB4 mRNA and [TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in increased expression of DNAJB4 mRNACTDPMID:17942748 and PMID:25975270
Dnajb4Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DNAJB4 mRNACTDPMID:32109520 and PMID:33387578
Dnajb4Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of DNAJB4 mRNACTDPMID:21346803
Dnajb4Rat2,5-hexanedione increases expressionEXP 64804642 and 5-hexanedione results in increased expression of DNAJB4 mRNACTDPMID:22952946
Dnajb4Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of DNAJB4 mRNACTDPMID:21346803

1 to 20 of 214 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Ratchaperone cofactor-dependent protein refolding involved_inIBAMGI:1931874 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb4Ratnegative regulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN008393908 and UniProtKB:P256851600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb4Ratprotein folding involved_inIEAInterPro:IPR0089711600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4Ratcytosol located_inISODNAJB4 (Homo sapiens)1624291 PMID:21231916RGDGO_REF:0000052 and PMID:21231916
Dnajb4Ratcytosol is_active_inIBAMGI:1930018 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb4Ratcytosol located_inIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
Dnajb4Ratnucleoplasm located_inIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
Dnajb4Ratnucleoplasm located_inISODNAJB4 (Homo sapiens)1624291 RGDGO_REF:0000052
Dnajb4Ratplasma membrane located_inISODNAJB4 (Homo sapiens)1624291 RGDGO_REF:0000052
Dnajb4Ratplasma membrane located_inIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
Dnajb4RatZ disc located_inISODNAJB4 (Homo sapiens)1624291 PMID:36264506RGDPMID:36264506
Dnajb4RatZ disc located_inIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 9 of 9 rows

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dnajb4RatATPase activator activity enablesISODNAJB4 (Homo sapiens)1624291 PMID:24318877RGDPMID:24318877
Dnajb4RatATPase activator activity enablesIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
Dnajb4Ratprotein binding enablesISODNAJB4 (Homo sapiens)1624291UniProtKB:P42858 more ...RGDPMID:21255413 more ...
Dnajb4Ratprotein binding  IPIRGDID:3717401959218 RGD 
Dnajb4Ratprotein-folding chaperone binding enablesISODNAJB4 (Homo sapiens)1624291UniProtKB:P0DMV8 more ...RGDPMID:21231916
Dnajb4Ratprotein-folding chaperone binding enablesIEAUniProtKB:Q9UDY4 and ensembl:ENSP000003597991600115GO_REF:0000107EnsemblGO_REF:0000107
Dnajb4Ratprotein-folding chaperone binding enablesIBAPANTHER:PTN001180662 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb4Ratunfolded protein binding enablesIBAPANTHER:PTN001180662 and UniProtKB:P256851600115GO_REF:0000033GO_CentralGO_REF:0000033
Dnajb4Ratunfolded protein binding enablesIEAInterPro:IPR0089711600115GO_REF:0000002InterProGO_REF:0000002
1 to 9 of 9 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Mapping the in vitro interactome of cardiac sodium (Na+ )-calcium (Ca2+ ) exchanger 1 (NCX1). Lubelwana Hafver T, etal., Proteomics. 2017 Sep;17(17-18). doi: 10.1002/pmic.201600417.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:21231916   PMID:22871113   PMID:23376485   PMID:24318877  



Dnajb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,790,296 - 243,819,042 (-)NCBIGRCr8
mRatBN7.22241,129,346 - 241,159,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,944,119 - 248,972,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,831,137 - 246,859,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,730,451 - 241,759,204 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,394,692 - 257,425,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,394,818 - 257,425,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,071,439 - 276,102,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,663,022 - 250,685,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,065,020 - 233,093,753 (-)NCBICelera
Cytogenetic Map2q45NCBI
DNAJB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,979,175 - 78,017,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,979,175 - 78,017,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,444,859 - 78,483,648 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,243,224 - 78,255,586 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,182,656 - 78,195,014NCBI
Celera176,709,697 - 76,722,060 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,602,292 - 76,614,655 (+)NCBIHuRef
CHM1_1178,587,021 - 78,599,380 (+)NCBICHM1_1
T2T-CHM13v2.0177,817,970 - 77,856,789 (+)NCBIT2T-CHM13v2.0
Dnajb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,887,217 - 151,915,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,884,148 - 151,915,939 (-)EnsemblGRCm39 Ensembl
GRCm383152,181,580 - 152,210,432 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,178,511 - 152,210,302 (-)EnsemblGRCm38mm10GRCm38
MGSCv373151,846,919 - 151,873,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,121,482 - 152,147,469 (-)NCBIMGSCv36mm8
Celera3158,661,623 - 158,688,134 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.03NCBI
Dnajb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,212,579 - 15,245,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,212,579 - 15,245,538 (-)NCBIChiLan1.0ChiLan1.0
DNAJB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,867,698 - 148,910,246 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,030,287 - 148,072,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,198,130 - 77,237,014 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,280,121 - 79,318,855 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,305,605 - 79,318,199 (+)Ensemblpanpan1.1panPan2
DNAJB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,878,823 - 68,923,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,879,690 - 68,888,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,536,300 - 71,581,141 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,463,848 - 69,508,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,463,850 - 69,507,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,971,033 - 69,015,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,915,350 - 68,959,992 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,402,186 - 69,446,409 (-)NCBIUU_Cfam_GSD_1.0
Dnajb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,250,579 - 89,286,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,785,324 - 4,800,215 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,785,351 - 4,796,581 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,243,937 - 135,281,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,243,927 - 135,281,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,425,681 - 125,462,891 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,158,552 - 55,172,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,157,327 - 55,171,301 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,320,060 - 62,356,906 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474219,249,122 - 19,260,502 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474219,249,122 - 19,279,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Dnajb4
91 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000017381
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat

1 to 10 of 17 rows
BQ205681  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,130,437 - 241,130,612 (+)MAPPERmRatBN7.2
Rnor_6.02257,395,845 - 257,396,019NCBIRnor6.0
Rnor_5.02276,072,592 - 276,072,766UniSTSRnor5.0
RGSC_v3.42250,684,969 - 250,685,143UniSTSRGSC3.4
Celera2233,065,119 - 233,065,293UniSTS
RH 3.4 Map21651.22UniSTS
Cytogenetic Map2q45UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000017381   ⟹   ENSRNOP00000017381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)Ensembl
Rnor_6.0 Ensembl2257,395,747 - 257,425,242 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086878   ⟹   ENSRNOP00000075386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2257,394,818 - 257,418,425 (-)Ensembl
RefSeq Acc Id: NM_001013076   ⟹   NP_001013094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,790,296 - 243,819,042 (-)NCBI
mRatBN7.22241,130,339 - 241,159,089 (-)NCBI
Rnor_6.02257,395,746 - 257,425,242 (-)NCBI
Rnor_5.02276,071,439 - 276,102,091 (-)NCBI
RGSC_v3.42250,663,022 - 250,685,242 (+)RGD
Celera2233,065,020 - 233,093,753 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233488   ⟹   XP_006233550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,790,302 - 243,818,997 (-)NCBI
mRatBN7.22241,129,346 - 241,159,272 (-)NCBI
Rnor_6.02257,394,692 - 257,425,344 (-)NCBI
Rnor_5.02276,071,439 - 276,102,091 (-)NCBI
Sequence:
Protein RefSeqs NP_001013094 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233550 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83638 (Get FASTA)   NCBI Sequence Viewer  
  EDL82486 (Get FASTA)   NCBI Sequence Viewer  
  EDL82487 (Get FASTA)   NCBI Sequence Viewer  
  EDL82488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017381
  ENSRNOP00000017381.6
RefSeq Acc Id: NP_001013094   ⟸   NM_001013076
- UniProtKB: Q5XIP0 (UniProtKB/TrEMBL),   F1LNN0 (UniProtKB/TrEMBL),   A0A9K3Y755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233550   ⟸   XM_006233488
- Peptide Label: isoform X1
- UniProtKB: Q5XIP0 (UniProtKB/TrEMBL),   F1LNN0 (UniProtKB/TrEMBL),   A0A9K3Y755 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017381   ⟸   ENSRNOT00000017381
Ensembl Acc Id: ENSRNOP00000075386   ⟸   ENSRNOT00000086878
J

Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIP0-F1-model_v2 AlphaFold Q5XIP0 1-337 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691823
Promoter ID:EPDNEW_R2348
Type:initiation region
Name:Dnajb4_1
Description:DnaJ heat shock protein family member B4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02257,425,299 - 257,425,359EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-50807 BioCyc
Ensembl Genes ENSRNOG00000013011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017381 ENTREZGENE
  ENSRNOT00000017381.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  Urease metallochaperone UreE, N-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134832 IMAGE-MGC_LOAD
InterPro DnaJ_C UniProtKB/TrEMBL
  DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  DnaJ_subfamily_B UniProtKB/TrEMBL
  HSP40/DnaJ_pept-bd UniProtKB/TrEMBL
KEGG Report rno:295549 UniProtKB/TrEMBL
MGC_CLONE MGC:94459 IMAGE-MGC_LOAD
NCBI Gene 295549 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 4 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  DnaJ_C UniProtKB/TrEMBL
PhenoGen Dnajb4 PhenoGen
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013011 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
  HSP40_DnaJ_pep UniProtKB/TrEMBL
UniProt A0A9K3Y755 ENTREZGENE, UniProtKB/TrEMBL
  F1LNN0 ENTREZGENE
  Q5XIP0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1LNN0 UniProtKB/TrEMBL
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajb4  DnaJ heat shock protein family (Hsp40) member B4  Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  LOC100359900  DnaJ (Hsp40) homolog, subfamily B, member 4-like  Data merged from RGD:2323144 1643240 APPROVED
2010-05-06 LOC100359900  DnaJ (Hsp40) homolog, subfamily B, member 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Dnajb4  DnaJ (Hsp40) homolog, subfamily B, member 4  Dnajb4_predicted  DnaJ (Hsp40) homolog, subfamily B, member 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dnajb4_predicted  DnaJ (Hsp40) homolog, subfamily B, member 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED