Usp19 (ubiquitin specific peptidase 19) - Rat Genome Database

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Gene: Usp19 (ubiquitin specific peptidase 19) Rattus norvegicus
Analyze
Symbol: Usp19
Name: ubiquitin specific peptidase 19
RGD ID: 1303276
Description: Predicted to enable Hsp90 protein binding activity; deubiquitinase activity; and ubiquitin protein ligase binding activity. Involved in positive regulation of cell cycle process; protein deubiquitination; and regulation of protein stability. Predicted to be located in cytosol and endoplasmic reticulum membrane. Orthologous to human USP19 (ubiquitin specific peptidase 19); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deubiquitinating enzyme 19; ubiquitin carboxyl-terminal hydrolase 19; ubiquitin specific protease 19; ubiquitin thioesterase 19; ubiquitin thiolesterase 19; ubiquitin-specific-processing protease 19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,069,227 - 118,080,283 (+)NCBIGRCr8
mRatBN7.28109,190,727 - 109,201,761 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,190,724 - 109,201,741 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,810,756 - 114,819,397 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,010,088 - 113,018,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,852,728 - 110,861,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,280,690 - 117,291,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,280,705 - 117,291,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,625,419 - 116,636,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,488,932 - 108,497,573 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp19RatAicardi-Goutieres Syndrome 1  ISOUSP19 (Homo sapiens)8554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 1ClinVarPMID:16845398 and PMID:28492532
Usp19Ratautosomal recessive limb-girdle muscular dystrophy type 2P  ISOUSP19 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive limb-girdle muscular dystrophy type 2PClinVarPMID:20234391 more ...
Usp19Ratcarnitine-acylcarnitine translocase deficiency  ISOUSP19 (Homo sapiens)8554872ClinVar Annotator: match by term: Carnitine acylcarnitine translocase deficiencyClinVarPMID:20234391 more ...
Usp19Ratgeneralized epilepsy  ISOUSP19 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVar 
Usp19Ratlong QT syndrome  ISOUSP19 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:26132555

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp19Rat1,2-dimethylhydrazine increases expressionISOUsp19 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of USP19 mRNACTDPMID:22206623
Usp19Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOUsp19 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of USP19 mRNACTDPMID:21570461
Usp19Rat2,4-D increases expressionISOUSP19 (Homo sapiens)64804642 and 4-Dichlorophenoxyacetic Acid results in increased expression of USP19 mRNACTDPMID:15878651
Usp19Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of USP19 mRNACTDPMID:21346803
Usp19Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of USP19 mRNACTDPMID:21346803
Usp19Rat4,4'-sulfonyldiphenol decreases expressionISOUsp19 (Mus musculus)6480464bisphenol S results in decreased expression of USP19 mRNACTDPMID:39298647
Usp19Ratacrolein multiple interactionsISOUSP19 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of and results in increased oxidation of USP19 mRNA more ...CTDPMID:32699268 and PMID:32845096
Usp19Ratacrylamide increases expressionISOUsp19 (Mus musculus)6480464Acrylamide results in increased expression of USP19 mRNACTDPMID:30807115
Usp19Rataflatoxin B1 increases expressionISOUsp19 (Mus musculus)6480464Aflatoxin B1 results in increased expression of USP19 mRNACTDPMID:19770486
Usp19Ratalpha-pinene multiple interactionsISOUSP19 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of and results in increased oxidation of USP19 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in decreased expression of and results in increased oxidation of USP19 mRNACTDPMID:32699268
Usp19Rataristolochic acid A increases expressionISOUSP19 (Homo sapiens)6480464aristolochic acid I results in increased expression of USP19 mRNACTDPMID:33212167
Usp19Ratarsenite(3-) decreases expressionISOUsp19 (Mus musculus)6480464arsenite results in decreased expression of USP19 mRNACTDPMID:33053406
Usp19Ratatrazine increases expressionISOUSP19 (Homo sapiens)6480464Atrazine results in increased expression of USP19 mRNACTDPMID:22378314
Usp19Ratbis(2-ethylhexyl) phthalate increases expressionISOUsp19 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of USP19 mRNACTDPMID:34319233
Usp19Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of USP19 mRNACTDPMID:25181051 and PMID:30816183
Usp19Ratbisphenol A decreases methylationISOUsp19 (Mus musculus)6480464bisphenol A results in decreased methylation of USP19 promoterCTDPMID:27312807
Usp19Ratcadmium dichloride decreases methylationEXP 6480464Cadmium Chloride results in decreased methylation of USP19 promoterCTDPMID:22457795
Usp19Ratcadmium dichloride decreases expressionISOUSP19 (Homo sapiens)6480464Cadmium Chloride results in decreased expression of USP19 mRNACTDPMID:38568856
Usp19Ratclofibrate multiple interactionsISOUsp19 (Mus musculus)6480464[Clofibrate co-treated with Acetaminophen] affects the expression of USP19 mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of USP19 mRNA]CTDPMID:17585979
Usp19Ratcopper atom increases expressionEXP 6480464Copper results in increased expression of USP19 mRNACTDPMID:30556269

1 to 20 of 46 rows

Biological Process
1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp19RatERAD pathway involved_inIBAPANTHER:PTN008578201 and UniProtKB:O949661600115GO_REF:0000033GO_CentralGO_REF:0000033
Usp19RatERAD pathway involved_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19RatERAD pathway involved_inISSUniProtKB:O949661600115GO_REF:0000024UniProtGO_REF:0000024
Usp19RatERAD pathway involved_inISOUSP19 (Homo sapiens)1624291 PMID:19465887RGDPMID:19465887
Usp19Ratnegative regulation of proteasomal protein catabolic process involved_inISOUsp19 (Mus musculus)1624291 PMID:25088257RGDPMID:25088257
Usp19Ratnegative regulation of skeletal muscle tissue development involved_inISSUniProtKB:Q3UJD61600115GO_REF:0000024UniProtGO_REF:0000024
Usp19Ratnegative regulation of skeletal muscle tissue development involved_inISOUsp19 (Mus musculus)1624291 PMID:21971047RGDPMID:21971047
Usp19Ratpositive regulation of cell cycle process involved_inIMP 8554198PMID:19015242UniProt 
Usp19Ratprotein deubiquitination involved_inIMP 8554323PMID:15562254UniProt 
Usp19Ratprotein deubiquitination involved_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratprotein deubiquitination involved_inIEAInterPro:IPR0013941600115GO_REF:0000002InterProGO_REF:0000002
Usp19Ratprotein deubiquitination involved_inISOUSP19 (Homo sapiens)1624291 PMID:24356957RGDPMID:24356957
Usp19Ratprotein K48-linked deubiquitination involved_inISOUsp19 (Mus musculus)1624291 PMID:25088257RGDPMID:25088257
Usp19Ratprotein stabilization involved_inISOUsp19 (Mus musculus)1624291 PMID:25088257RGDPMID:25088257
Usp19Ratprotein stabilization involved_inISOUSP19 (Homo sapiens)1624291 PMID:25088257RGDPMID:25088257
Usp19Ratprotein stabilization involved_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratproteolysis involved_inIEAUniProtKB-KW:KW-06451600115GO_REF:0000043UniProtGO_REF:0000043
Usp19Ratregulation of cellular response to hypoxia involved_inISSUniProtKB:O949661600115GO_REF:0000024UniProtGO_REF:0000024
Usp19Ratregulation of cellular response to hypoxia involved_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratregulation of cellular response to hypoxia involved_inISOUSP19 (Homo sapiens)1624291 PMID:22128162RGDPMID:22128162
1 to 20 of 27 rows

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp19Ratcytosol located_inISOUSP19 (Homo sapiens)1624291 PMID:24356957RGDPMID:24356957
Usp19Ratcytosol located_inISOUsp19 (Mus musculus)1624291 PMID:19015242RGDPMID:19015242
Usp19Ratcytosol located_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Usp19Ratendoplasmic reticulum membrane located_inISSUniProtKB:O949661600115GO_REF:0000024UniProtGO_REF:0000024
Usp19Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-00971600115GO_REF:0000044UniProtGO_REF:0000044
Usp19Ratendoplasmic reticulum membrane located_inIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratendoplasmic reticulum membrane located_inISOUSP19 (Homo sapiens)1624291 PMID:19465887RGDPMID:19465887
Usp19Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
1 to 9 of 9 rows

Molecular Function
1 to 18 of 18 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp19Ratcysteine-type deubiquitinase activity enablesISOUsp19 (Mus musculus)1624291 PMID:21971047RGDPMID:21971047
Usp19Ratcysteine-type deubiquitinase activity enablesIEAEC:3.4.19.121600115GO_REF:0000003UniProtGO_REF:0000003
Usp19Ratcysteine-type deubiquitinase activity enablesIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19Ratcysteine-type deubiquitinase activity enablesISSUniProtKB:Q3UJD61600115GO_REF:0000024UniProtGO_REF:0000024
Usp19Ratcysteine-type deubiquitinase activity enablesIEAInterPro:IPR001394 and InterPro:IPR0182001600115GO_REF:0000002InterProGO_REF:0000002
Usp19Ratcysteine-type deubiquitinase activity enablesISSUniProtKB:O949661600115GO_REF:0000024UniProtGO_REF:0000024
Usp19Ratcysteine-type deubiquitinase activity enablesISOUSP19 (Homo sapiens)1624291 PMID:19465887 and PMID:24356957RGDPMID:19465887 and PMID:24356957
Usp19Ratcysteine-type peptidase activity enablesIEAUniProtKB-KW:KW-07881600115GO_REF:0000043UniProtGO_REF:0000043
Usp19RatHsp90 protein binding enablesIEAUniProtKB:O94966 and ensembl:ENSP000003952601600115GO_REF:0000107EnsemblGO_REF:0000107
Usp19RatHsp90 protein binding enablesISOUSP19 (Homo sapiens)1624291 PMID:24356957RGDPMID:24356957
Usp19Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Usp19RatK48-linked deubiquitinase activity enablesISOUsp19 (Mus musculus)1624291 PMID:25088257RGDPMID:25088257
Usp19Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Usp19Ratpeptidase activity enablesIEAUniProtKB-KW:KW-06451600115GO_REF:0000043UniProtGO_REF:0000043
Usp19Ratprotein binding enablesISOUsp19 (Mus musculus) and PR:Q3UJD6-21624291UniProtKB:O75344 and PMID:25036637RGDPMID:25036637
Usp19Ratprotein binding enablesISOUSP19 (Homo sapiens)1624291UniProtKB:P13569 more ...RGDPMID:19465887 more ...
Usp19Ratubiquitin protein ligase binding enablesISOUsp19 (Mus musculus)1624291UniProtKB:O60337 and PMID:25088257RGDPMID:25088257
Usp19Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043
1 to 18 of 18 rows


#
Reference Title
Reference Citation
1. USP19 is a ubiquitin-specific protease regulated in rat skeletal muscle during catabolic states. Combaret L, etal., Am J Physiol Endocrinol Metab. 2005 Apr;288(4):E693-700. Epub 2004 Nov 23.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1. Lu Y, etal., Mol Cell Biol. 2009 Jan;29(2):547-58. doi: 10.1128/MCB.00329-08. Epub 2008 Nov 17.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:19465887   PMID:19773579   PMID:21971047   PMID:22128162   PMID:24356957   PMID:25088257   PMID:25568336   PMID:27156111   PMID:32798288  



Usp19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,069,227 - 118,080,283 (+)NCBIGRCr8
mRatBN7.28109,190,727 - 109,201,761 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,190,724 - 109,201,741 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,810,756 - 114,819,397 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,010,088 - 113,018,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,852,728 - 110,861,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,280,690 - 117,291,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,280,705 - 117,291,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,625,419 - 116,636,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,488,932 - 108,497,573 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
USP19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,108,050 - 49,120,823 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,108,046 - 49,120,938 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,145,483 - 49,158,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,121,112 - 49,133,217 (-)NCBINCBI36Build 36hg18NCBI36
Build 34349,121,111 - 49,133,217NCBI
Celera349,103,060 - 49,115,165 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,204,015 - 49,216,907 (-)NCBIHuRef
CHM1_1349,098,226 - 49,111,118 (-)NCBICHM1_1
T2T-CHM13v2.0349,136,122 - 49,148,895 (-)NCBIT2T-CHM13v2.0
Usp19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,367,806 - 108,379,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,367,801 - 108,379,536 (+)EnsemblGRCm39 Ensembl
GRCm389108,490,607 - 108,502,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,490,602 - 108,502,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,393,007 - 108,404,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,348,851 - 108,359,802 (+)NCBIMGSCv36mm8
Celera9108,100,140 - 108,111,769 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.42NCBI
Usp19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,104,212 - 1,115,267 (-)NCBIChiLan1.0ChiLan1.0
USP19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,086,568 - 49,099,415 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,091,336 - 49,104,185 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,032,373 - 49,045,238 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,112,271 - 50,125,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,100,216 - 50,125,112 (-)Ensemblpanpan1.1panPan2
USP19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,062,802 - 40,074,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,064,599 - 40,074,082 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,980,975 - 39,992,470 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,419,685 - 40,431,184 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,419,711 - 40,431,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,786,538 - 39,798,032 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,190,048 - 40,201,538 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,470,345 - 40,481,844 (+)NCBIUU_Cfam_GSD_1.0
Usp19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,054,119 - 64,065,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529813,951 - 826,014 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529814,649 - 826,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,726,672 - 31,737,981 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,726,668 - 31,738,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,958,907 - 34,968,638 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,510,554 - 10,523,576 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,510,423 - 10,523,487 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,558,381 - 156,571,234 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,133,595 - 3,146,221 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,134,419 - 3,145,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Usp19
17 total Variants

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:38
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000074772
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat

1 to 10 of 22 rows
BI274871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,201,365 - 109,201,557 (+)MAPPERmRatBN7.2
Rnor_6.08117,291,331 - 117,291,522NCBIRnor6.0
Rnor_5.08116,636,034 - 116,636,225UniSTSRnor5.0
Celera8108,497,873 - 108,498,064UniSTS
RH 3.4 Map81116.09UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 22 of 22 rows
RefSeq Transcripts NM_001001516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY605065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENSRNOT00000074772   ⟹   ENSRNOP00000067744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,190,868 - 109,201,123 (+)Ensembl
Rnor_6.0 Ensembl8117,282,390 - 117,291,031 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085038   ⟹   ENSRNOP00000069554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,190,724 - 109,201,741 (+)Ensembl
Rnor_6.0 Ensembl8117,280,705 - 117,291,351 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094044   ⟹   ENSRNOP00000090860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,190,724 - 109,201,123 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099172   ⟹   ENSRNOP00000097405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,190,724 - 109,201,124 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119213   ⟹   ENSRNOP00000078495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,190,868 - 109,201,741 (+)Ensembl
RefSeq Acc Id: NM_001001516   ⟹   NP_001001516
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,070,963 - 118,079,604 (+)NCBI
mRatBN7.28109,192,425 - 109,201,066 (+)NCBI
Rnor_6.08117,282,390 - 117,291,031 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Celera8108,488,932 - 108,497,573 (+)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006243793   ⟹   XP_006243855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
mRatBN7.28109,190,728 - 109,201,125 (+)NCBI
Rnor_6.08117,280,691 - 117,291,090 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243794   ⟹   XP_006243856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
mRatBN7.28109,190,728 - 109,201,125 (+)NCBI
Rnor_6.08117,280,690 - 117,291,090 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243795   ⟹   XP_006243857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
mRatBN7.28109,190,728 - 109,201,125 (+)NCBI
Rnor_6.08117,280,691 - 117,291,090 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243796   ⟹   XP_006243858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
mRatBN7.28109,190,728 - 109,201,125 (+)NCBI
Rnor_6.08117,280,691 - 117,291,090 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243797   ⟹   XP_006243859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
mRatBN7.28109,190,729 - 109,201,761 (+)NCBI
Rnor_6.08117,280,691 - 117,291,729 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243798   ⟹   XP_006243860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
mRatBN7.28109,190,729 - 109,201,761 (+)NCBI
Rnor_6.08117,280,691 - 117,291,729 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243799   ⟹   XP_006243861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
mRatBN7.28109,190,729 - 109,201,761 (+)NCBI
Rnor_6.08117,280,691 - 117,291,729 (+)NCBI
Rnor_5.08116,625,419 - 116,636,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081691   ⟹   XP_038937619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
mRatBN7.28109,190,727 - 109,201,125 (+)NCBI
RefSeq Acc Id: XM_039081692   ⟹   XP_038937620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
mRatBN7.28109,190,728 - 109,201,761 (+)NCBI
RefSeq Acc Id: XM_063265677   ⟹   XP_063121747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
RefSeq Acc Id: XM_063265678   ⟹   XP_063121748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,663 (+)NCBI
RefSeq Acc Id: XM_063265679   ⟹   XP_063121749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
RefSeq Acc Id: XM_063265680   ⟹   XP_063121750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
RefSeq Acc Id: XM_063265681   ⟹   XP_063121751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,080,283 (+)NCBI
RefSeq Acc Id: XR_005487861
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,069,227 - 118,079,934 (+)NCBI
mRatBN7.28109,190,728 - 109,201,402 (+)NCBI
1 to 5 of 20 rows
1 to 5 of 20 rows
RefSeq Acc Id: NP_001001516   ⟸   NM_001001516
- UniProtKB: Q6J1Y9 (UniProtKB/Swiss-Prot),   M0RDN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243856   ⟸   XM_006243794
- Peptide Label: isoform X2
- UniProtKB: M0RDN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243860   ⟸   XM_006243798
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZMS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243855   ⟸   XM_006243793
- Peptide Label: isoform X1
- UniProtKB: A6I361 (UniProtKB/TrEMBL),   M0RDN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243857   ⟸   XM_006243795
- Peptide Label: isoform X3
- UniProtKB: M0RDN9 (UniProtKB/TrEMBL)
- Sequence:
CS   MYND-type   USP

Name Modeler Protein Id AA Range Protein Structure
AF-Q6J1Y9-F1-model_v2 AlphaFold Q6J1Y9 1-1357 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696315
Promoter ID:EPDNEW_R6828
Type:initiation region
Name:Usp19_1
Description:ubiquitin specific peptidase 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6829  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08117,280,692 - 117,280,752EPDNEW
RGD ID:13696304
Promoter ID:EPDNEW_R6829
Type:multiple initiation site
Name:Usp19_2
Description:ubiquitin specific peptidase 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6828  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08117,280,813 - 117,280,873EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29138 BioCyc
Ensembl Genes ENSRNOG00000049531 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000074772 ENTREZGENE
  ENSRNOT00000085038 ENTREZGENE
  ENSRNOT00000094044 ENTREZGENE
  ENSRNOT00000119213 ENTREZGENE
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot
  6.10.140.2220 UniProtKB/Swiss-Prot
  Cysteine proteinases UniProtKB/Swiss-Prot
InterPro CS_dom UniProtKB/Swiss-Prot
  HSP20-like_chaperone UniProtKB/Swiss-Prot
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  Ub_carboxyl-term_hydrolase UniProtKB/Swiss-Prot
  USP_CS UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
  Znf_MYND UniProtKB/Swiss-Prot
KEGG Report rno:361190 UniProtKB/Swiss-Prot
NCBI Gene 361190 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 UniProtKB/Swiss-Prot
Pfam PF04969 UniProtKB/Swiss-Prot
  UCH UniProtKB/Swiss-Prot
  USP19_linker UniProtKB/Swiss-Prot
  zf-MYND UniProtKB/Swiss-Prot
PhenoGen Usp19 PhenoGen
PROSITE PS51203 UniProtKB/Swiss-Prot
  USP_1 UniProtKB/Swiss-Prot
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot
  ZF_MYND_1 UniProtKB/Swiss-Prot
  ZF_MYND_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000049531 RatGTEx
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/Swiss-Prot
  SSF49764 UniProtKB/Swiss-Prot
  SSF54001 UniProtKB/Swiss-Prot
UniProt A0A0G2JVN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AF46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B5Q8_RAT UniProtKB/TrEMBL
1 to 40 of 45 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Usp19  ubiquitin specific peptidase 19  Usp19  ubiquitin specific protease 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Usp19        Symbol and Name status set to provisional 70820 PROVISIONAL