Usp54 (ubiquitin specific peptidase 54) - Rat Genome Database

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Gene: Usp54 (ubiquitin specific peptidase 54) Rattus norvegicus
Analyze
Symbol: Usp54
Name: ubiquitin specific peptidase 54
RGD ID: 1303206
Description: Predicted to enable cysteine-type deubiquitinase activity. Orthologous to human USP54 (ubiquitin specific peptidase 54); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inactive ubiquitin carboxyl-terminal hydrolase 54; inactive ubiquitin-specific peptidase 54; ubiquitin specific protease 54
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,706,013 - 3,806,935 (+)NCBIGRCr8
mRatBN7.2153,659,345 - 3,757,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,659,240 - 3,757,711 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,702,833 - 3,767,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,089,252 - 5,154,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,701,644 - 3,766,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,091,834 - 4,190,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,091,754 - 4,190,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,193,069 - 8,291,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,918,087 - 3,983,122 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,918,086 - 3,948,102 (+)NCBI
Celera15836,782 - 901,563 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. A genomic analysis of rat proteases and protease inhibitors. Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22.
3. Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15057822  


Genomics

Comparative Map Data
Usp54
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,706,013 - 3,806,935 (+)NCBIGRCr8
mRatBN7.2153,659,345 - 3,757,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,659,240 - 3,757,711 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,702,833 - 3,767,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,089,252 - 5,154,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,701,644 - 3,766,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,091,834 - 4,190,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,091,754 - 4,190,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,193,069 - 8,291,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,918,087 - 3,983,122 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,918,086 - 3,948,102 (+)NCBI
Celera15836,782 - 901,563 (-)NCBICelera
Cytogenetic Map15p16NCBI
USP54
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,497,538 - 73,625,981 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,497,538 - 73,626,117 (-)EnsemblGRCh38hg38GRCh38
GRCh371075,257,296 - 75,385,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361074,927,302 - 75,005,439 (-)NCBINCBI36Build 36hg18NCBI36
Build 341074,928,058 - 74,983,104NCBI
Celera1068,542,895 - 68,621,030 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,250,909 - 69,328,906 (-)NCBIHuRef
CHM1_11075,539,039 - 75,617,173 (-)NCBICHM1_1
T2T-CHM13v2.01074,368,953 - 74,497,405 (-)NCBIT2T-CHM13v2.0
Usp54
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,598,980 - 20,694,559 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,598,980 - 20,691,131 (-)EnsemblGRCm39 Ensembl
GRCm381420,548,912 - 20,644,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,548,912 - 20,641,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv371421,368,134 - 21,437,576 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,337,470 - 19,350,224 (-)NCBIMGSCv36mm8
Celera1416,930,378 - 16,999,960 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
Usp54
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,258,024 - 18,321,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,240,303 - 18,322,197 (+)NCBIChiLan1.0ChiLan1.0
USP54
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,673,298 - 85,803,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,678,621 - 85,812,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01070,044,872 - 70,173,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,503,267 - 72,630,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,503,267 - 72,596,502 (-)Ensemblpanpan1.1panPan2
USP54
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,029,926 - 24,151,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,029,918 - 24,129,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha424,167,654 - 24,289,617 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0424,310,187 - 24,432,163 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,310,195 - 24,389,463 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1424,207,827 - 24,329,405 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,408,044 - 24,529,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,762,959 - 24,884,898 (-)NCBIUU_Cfam_GSD_1.0
Usp54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,939,580 - 57,066,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,489,787 - 5,558,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,432,420 - 5,559,698 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP54
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,307,230 - 76,377,006 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,307,223 - 76,439,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,432,756 - 82,498,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP54
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,665,388 - 57,780,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl957,665,674 - 57,779,632 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604818,242,681 - 18,361,899 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp54
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247547,098,591 - 7,169,981 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247547,099,565 - 7,226,067 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp54
264 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:437
Count of miRNA genes:224
Interacting mature miRNAs:258
Transcripts:ENSRNOT00000029615
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat

Markers in Region
RH130110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,757,466 - 3,757,656 (+)MAPPERmRatBN7.2
Rnor_6.0154,190,172 - 4,190,361NCBIRnor6.0
Rnor_5.0158,290,960 - 8,291,149UniSTSRnor5.0
RGSC_v3.4153,982,886 - 3,983,075UniSTSRGSC3.4
Celera15836,829 - 837,018UniSTS
RH 3.4 Map1566.6UniSTS
Cytogenetic Map15p16UniSTS
BF411196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,747,571 - 3,747,666 (+)MAPPERmRatBN7.2
Rnor_6.0154,180,278 - 4,180,372NCBIRnor6.0
Rnor_5.0158,281,066 - 8,281,160UniSTSRnor5.0
RGSC_v3.4153,972,992 - 3,973,086UniSTSRGSC3.4
Celera15846,818 - 846,912UniSTS
RH 3.4 Map1565.7UniSTS
Cytogenetic Map15p16UniSTS
RH138305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,730,389 - 3,730,538 (+)MAPPERmRatBN7.2
Rnor_6.0154,163,097 - 4,163,245NCBIRnor6.0
Rnor_5.0158,263,885 - 8,264,033UniSTSRnor5.0
RGSC_v3.4153,955,811 - 3,955,959UniSTSRGSC3.4
Celera15863,954 - 864,102UniSTS
RH 3.4 Map1566.2UniSTS
Cytogenetic Map15p16UniSTS
Ncl  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,699,188 - 3,699,761 (+)MAPPERmRatBN7.2
Rnor_6.0154,131,898 - 4,132,470NCBIRnor6.0
Rnor_5.0158,233,441 - 8,234,013UniSTSRnor5.0
RGSC_v3.4153,924,612 - 3,925,184UniSTSRGSC3.4
Celera15894,468 - 895,040UniSTS
Cytogenetic Map15p16UniSTS
Cytogenetic Map9q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 8 6 6 1 1 74 22 38 11 1
Low 3 33 49 35 19 35 7 10 13 3 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI282345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB557281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB726956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB727799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB749287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB794859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000029615   ⟹   ENSRNOP00000038767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,659,240 - 3,757,703 (+)Ensembl
Rnor_6.0 Ensembl154,125,373 - 4,190,408 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083467   ⟹   ENSRNOP00000068778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,659,240 - 3,757,703 (+)Ensembl
Rnor_6.0 Ensembl154,091,754 - 4,190,366 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099921   ⟹   ENSRNOP00000097777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,683,291 - 3,757,711 (+)Ensembl
RefSeq Acc Id: NM_001008863   ⟹   NP_001008863
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,741,899 - 3,806,935 (+)NCBI
mRatBN7.2153,692,654 - 3,757,703 (+)NCBI
Rnor_6.0154,125,373 - 4,190,408 (+)NCBI
Rnor_5.0158,193,069 - 8,291,196 (+)NCBI
RGSC_v3.4153,918,087 - 3,983,122 (+)RGD
Celera15836,782 - 901,563 (-)RGD
Sequence:
RefSeq Acc Id: XM_017599770   ⟹   XP_017455259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
mRatBN7.2153,681,455 - 3,757,703 (+)NCBI
Rnor_6.0154,114,726 - 4,190,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093573   ⟹   XP_038949501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
mRatBN7.2153,681,458 - 3,757,703 (+)NCBI
RefSeq Acc Id: XM_039093576   ⟹   XP_038949504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,794,065 (+)NCBI
mRatBN7.2153,681,452 - 3,744,842 (+)NCBI
RefSeq Acc Id: XM_039093577   ⟹   XP_038949505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,798,587 (+)NCBI
mRatBN7.2153,681,453 - 3,745,304 (+)NCBI
RefSeq Acc Id: XM_063274515   ⟹   XP_063130585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274516   ⟹   XP_063130586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274517   ⟹   XP_063130587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,715,449 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274518   ⟹   XP_063130588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274519   ⟹   XP_063130589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,715,484 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274521   ⟹   XP_063130591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,715,484 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274522   ⟹   XP_063130592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,708,963 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274523   ⟹   XP_063130593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,709,377 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274524   ⟹   XP_063130594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,708,963 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274525   ⟹   XP_063130595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,708,401 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274527   ⟹   XP_063130597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,708,963 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274528   ⟹   XP_063130598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,709,377 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274529   ⟹   XP_063130599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,736,221 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274530   ⟹   XP_063130600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,720,411 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274531   ⟹   XP_063130601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,735,480 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274532   ⟹   XP_063130602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274533   ⟹   XP_063130603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274534   ⟹   XP_063130604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274535   ⟹   XP_063130605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274536   ⟹   XP_063130606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274537   ⟹   XP_063130607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,708,963 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274538   ⟹   XP_063130608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,706,013 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274539   ⟹   XP_063130609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274540   ⟹   XP_063130610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,728,938 - 3,806,935 (+)NCBI
RefSeq Acc Id: XM_063274541   ⟹   XP_063130611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,778,583 - 3,806,935 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001008863 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455259 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949505 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130585 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130588 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130589 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130591 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130594 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130595 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130598 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130600 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130601 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130602 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130603 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97982 (Get FASTA)   NCBI Sequence Viewer  
  CAE51895 (Get FASTA)   NCBI Sequence Viewer  
  EDL86235 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038767
  ENSRNOP00000038767.4
  ENSRNOP00000068778
  ENSRNOP00000068778.1
  ENSRNOP00000097777.1
  ENSRNOP00055027056
  ENSRNOP00060017035
  ENSRNOP00065013921
GenBank Protein Q6IE24 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008863   ⟸   NM_001008863
- UniProtKB: Q4QQU8 (UniProtKB/Swiss-Prot),   Q6IE24 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017455259   ⟸   XM_017599770
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068778   ⟸   ENSRNOT00000083467
RefSeq Acc Id: ENSRNOP00000038767   ⟸   ENSRNOT00000029615
RefSeq Acc Id: XP_038949504   ⟸   XM_039093576
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949505   ⟸   XM_039093577
- Peptide Label: isoform X10
- UniProtKB: A6KKP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949501   ⟸   XM_039093573
- Peptide Label: isoform X4
- UniProtKB: Q6IE24 (UniProtKB/Swiss-Prot),   Q4QQU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000097777   ⟸   ENSRNOT00000099921
RefSeq Acc Id: XP_063130588   ⟸   XM_063274518
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130605   ⟸   XM_063274535
- Peptide Label: isoform X4
- UniProtKB: Q6IE24 (UniProtKB/Swiss-Prot),   Q4QQU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063130585   ⟸   XM_063274515
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130604   ⟸   XM_063274534
- Peptide Label: isoform X4
- UniProtKB: Q6IE24 (UniProtKB/Swiss-Prot),   Q4QQU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063130586   ⟸   XM_063274516
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130606   ⟸   XM_063274536
- Peptide Label: isoform X4
- UniProtKB: Q6IE24 (UniProtKB/Swiss-Prot),   Q4QQU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063130608   ⟸   XM_063274538
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130595   ⟸   XM_063274525
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130594   ⟸   XM_063274524
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130592   ⟸   XM_063274522
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130597   ⟸   XM_063274527
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130607   ⟸   XM_063274537
- Peptide Label: isoform X4
- UniProtKB: Q6IE24 (UniProtKB/Swiss-Prot),   Q4QQU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063130593   ⟸   XM_063274523
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130598   ⟸   XM_063274528
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130587   ⟸   XM_063274517
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130589   ⟸   XM_063274519
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130591   ⟸   XM_063274521
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130600   ⟸   XM_063274530
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130609   ⟸   XM_063274539
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063130610   ⟸   XM_063274540
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063130603   ⟸   XM_063274533
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130602   ⟸   XM_063274532
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130601   ⟸   XM_063274531
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130599   ⟸   XM_063274529
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130611   ⟸   XM_063274541
- Peptide Label: isoform X8
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IE24-F1-model_v2 AlphaFold Q6IE24 1-1588 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303206 AgrOrtholog
BioCyc Gene G2FUF-14549 BioCyc
Ensembl Genes ENSRNOG00000027012 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019534 UniProtKB/Swiss-Prot
  ENSRNOG00060012691 UniProtKB/Swiss-Prot
  ENSRNOG00065011247 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029615 ENTREZGENE
  ENSRNOT00000029615.5 UniProtKB/Swiss-Prot
  ENSRNOT00000083467.2 UniProtKB/TrEMBL
  ENSRNOT00000099921.1 UniProtKB/Swiss-Prot
  ENSRNOT00055033344 UniProtKB/Swiss-Prot
  ENSRNOT00060021561 UniProtKB/Swiss-Prot
  ENSRNOT00065018239 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7443440 IMAGE-MGC_LOAD
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:408223 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116116 IMAGE-MGC_LOAD
NCBI Gene 408223 ENTREZGENE
PANTHER PTHR22975:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN SPECIFIC PROTEINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp54 PhenoGen
PROSITE USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027012 RatGTEx
  ENSRNOG00055019534 RatGTEx
  ENSRNOG00060012691 RatGTEx
  ENSRNOG00065011247 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JTN3 ENTREZGENE, UniProtKB/TrEMBL
  A6KKP1 ENTREZGENE, UniProtKB/TrEMBL
  Q4QQU8 ENTREZGENE
  Q6IE24 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q4QQU8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Usp54  ubiquitin specific peptidase 54  Usp54  ubiquitin specific protease 54  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-14 Usp54  ubiquitin specific protease 54      Symbol and Name status set to provisional 70820 PROVISIONAL