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Gene: Usp54 (ubiquitin specific peptidase 54) Rattus norvegicus

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Symbol:

Usp54

Name:

ubiquitin specific peptidase 54

RGD ID:

1303206

Description:

Predicted to enable K63-linked deubiquitinase activity and cysteine-type deubiquitinase activity. Predicted to be involved in protein deubiquitination and proteolysis. Orthologous to human USP54 (ubiquitin specific peptidase 54); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

inactive ubiquitin carboxyl-terminal hydrolase 54; inactive ubiquitin-specific peptidase 54; ubiquitin carboxyl-terminal hydrolase 54; ubiquitin specific protease 54

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP54 (ubiquitin specific peptidase 54)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NECTIN4 (nectin cell adhesion molecule 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	USP54 (ubiquitin specific peptidase 54)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp54 (ubiquitin specific peptidase 54)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp54a (ubiquitin specific peptidase 54a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	usp54b (ubiquitin specific peptidase 54b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	ec	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	usp54	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI		GRCr8
mRatBN7.2	15	3,659,345 - 3,757,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,711 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	3,702,833 - 3,767,868 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,089,252 - 5,154,287 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,701,644 - 3,766,679 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,091,834 - 4,190,408 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,408 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	3,918,086 - 3,948,102 (+)	NCBI
Celera	15	836,782 - 901,563 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp54	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Usp54 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of USP54 mRNA	CTD	PMID:22206623
Usp54	Rat	1,3-dinitrobenzene	increases expression	EXP		6480464	3-dinitrobenzene results in increased expression of USP54 mRNA	CTD	PMID:24140754
Usp54	Rat	17alpha-ethynylestradiol	increases expression	ISO	Usp54 (Mus musculus)	6480464	Ethinyl Estradiol results in increased expression of USP54 mRNA	CTD	PMID:17942748
Usp54	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of USP54 mRNA	CTD	PMID:17942748
Usp54	Rat	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	EXP		6480464	2 more ...	CTD	PMID:27291303
Usp54	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of USP54 mRNA	CTD	PMID:20106945
Usp54	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Usp54 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of USP54 mRNA	CTD	PMID:21570461
Usp54	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of USP54 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to USP54 promoter]	CTD	PMID:17942748 and PMID:19654925
Usp54	Rat	4,4'-diaminodiphenylmethane	increases expression	ISO	Usp54 (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane results in increased expression of USP54 mRNA	CTD	PMID:18648102
Usp54	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	USP54 (Homo sapiens)	6480464	bisphenol S results in increased methylation of USP54 gene	CTD	PMID:31601247
Usp54	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of USP54 mRNA	CTD	PMID:24780913 and PMID:30047161
Usp54	Rat	acrylamide	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Acrylamide results in decreased expression of USP54 mRNA	CTD	PMID:32763439
Usp54	Rat	aflatoxin B1	increases expression	ISO	Usp54 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of USP54 mRNA	CTD	PMID:19770486
Usp54	Rat	aflatoxin B1	increases methylation	ISO	USP54 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of USP54 gene	CTD	PMID:27153756
Usp54	Rat	all-trans-retinoic acid	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Tretinoin results in decreased expression of USP54 mRNA	CTD	PMID:33167477
Usp54	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of USP54 mRNA	CTD	PMID:30047161
Usp54	Rat	antirheumatic drug	increases expression	ISO	USP54 (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of USP54 mRNA	CTD	PMID:24449571
Usp54	Rat	benzo[a]pyrene	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of USP54 mRNA	CTD	PMID:20106945
Usp54	Rat	benzo[a]pyrene	decreases methylation	ISO	Usp54 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of USP54 exon and Benzo(a)pyrene results in decreased methylation of USP54 intron	CTD	PMID:27901495
Usp54	Rat	benzo[a]pyrene	affects methylation	ISO	USP54 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of USP54 exon	CTD	PMID:27901495
Usp54	Rat	benzo[a]pyrene	increases methylation	ISO	USP54 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of USP54 promoter	CTD	PMID:27901495
Usp54	Rat	benzo[a]pyrene	increases expression	ISO	USP54 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of USP54 mRNA	CTD	PMID:22316170 and PMID:26238291
Usp54	Rat	benzo[a]pyrene	decreases expression	ISO	Usp54 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of USP54 mRNA	CTD	PMID:19770486
Usp54	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of USP54 mRNA	CTD	PMID:25181051
Usp54	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of USP54 mRNA	CTD	PMID:30816183
Usp54	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of USP54 gene	CTD	PMID:28505145
Usp54	Rat	bisphenol A	increases expression	ISO	Usp54 (Mus musculus)	6480464	bisphenol A results in increased expression of USP54 mRNA	CTD	PMID:25594700
Usp54	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of USP54 mRNA	CTD	PMID:33453195
Usp54	Rat	caffeine	affects phosphorylation	ISO	USP54 (Homo sapiens)	6480464	Caffeine affects the phosphorylation of USP54 protein	CTD	PMID:35688186
Usp54	Rat	CGP 52608	multiple interactions	ISO	USP54 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to USP54 gene]	CTD	PMID:28238834
Usp54	Rat	clobetasol	increases expression	ISO	Usp54 (Mus musculus)	6480464	Clobetasol results in increased expression of USP54 mRNA	CTD	PMID:27462272
Usp54	Rat	coumestrol	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Coumestrol results in decreased expression of USP54 mRNA	CTD	PMID:19167446
Usp54	Rat	dexamethasone	increases expression	ISO	Usp54 (Mus musculus)	6480464	Dexamethasone results in increased expression of USP54 mRNA	CTD	PMID:22733784
Usp54	Rat	dicrotophos	increases expression	ISO	USP54 (Homo sapiens)	6480464	dicrotophos results in increased expression of USP54 mRNA	CTD	PMID:28302478
Usp54	Rat	doxorubicin	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of USP54 mRNA	CTD	PMID:29803840
Usp54	Rat	ethanol	increases expression	ISO	Usp54 (Mus musculus)	6480464	Ethanol results in increased expression of USP54 mRNA	CTD	PMID:30319688
Usp54	Rat	ethanol	affects expression	ISO	Usp54 (Mus musculus)	6480464	Ethanol affects the expression of USP54 mRNA	CTD	PMID:30319688
Usp54	Rat	fluoranthene	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[1-methylanthracene co-treated with fluoranthene] results in increased expression of USP54 mRNA	CTD	PMID:28329830
Usp54	Rat	FR900359	affects phosphorylation	ISO	USP54 (Homo sapiens)	6480464	FR900359 affects the phosphorylation of USP54 protein	CTD	PMID:37730182
Usp54	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of USP54 mRNA	CTD	PMID:33387578
Usp54	Rat	glyphosate	increases expression	ISO	Usp54 (Mus musculus)	6480464	Glyphosate results in increased expression of USP54 mRNA	CTD	PMID:35897073
Usp54	Rat	inulin	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of USP54 mRNA	CTD	PMID:36331819
Usp54	Rat	isoflurane	increases methylation	ISO	Usp54 (Mus musculus)	6480464	Isoflurane results in increased methylation of USP54 mRNA	CTD	PMID:35249202
Usp54	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of USP54 mRNA	CTD	PMID:30047161
Usp54	Rat	methyl methanesulfonate	increases expression	ISO	USP54 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of USP54 mRNA	CTD	PMID:23649840
Usp54	Rat	monosodium L-glutamate	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[Sodium Glutamate co-treated with Trans Fatty Acids] results in decreased expression of USP54 mRNA	CTD	PMID:19001666
Usp54	Rat	nickel atom	decreases expression	ISO	USP54 (Homo sapiens)	6480464	Nickel results in decreased expression of USP54 mRNA	CTD	PMID:25583101
Usp54	Rat	paracetamol	affects expression	ISO	Usp54 (Mus musculus)	6480464	Acetaminophen affects the expression of USP54 mRNA	CTD	PMID:17562736
Usp54	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of USP54 mRNA	CTD	PMID:33387578
Usp54	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Usp54 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in increased expression of USP54 mRNA	CTD	PMID:36331819
Usp54	Rat	sodium arsenite	affects expression	ISO	USP54 (Homo sapiens)	6480464	sodium arsenite affects the expression of USP54 mRNA	CTD	PMID:29319823
Usp54	Rat	sodium arsenite	decreases expression	ISO	USP54 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of USP54 mRNA	CTD	PMID:34032870
Usp54	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of USP54 mRNA	CTD	PMID:30047161
Usp54	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of USP54 mRNA	CTD	PMID:31150632
Usp54	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of USP54 mRNA	CTD	PMID:30589522
Usp54	Rat	triphenyl phosphate	affects expression	ISO	USP54 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of USP54 mRNA	CTD	PMID:37042841
Usp54	Rat	valproic acid	increases expression	ISO	USP54 (Homo sapiens)	6480464	Valproic Acid results in increased expression of USP54 mRNA	CTD	PMID:29154799
Usp54	Rat	valproic acid	decreases methylation	ISO	USP54 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of USP54 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp54	Rat	protein deubiquitination	involved_in	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp54	Rat	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Usp54	Rat	cysteine-type deubiquitinase activity	enables	ISO	USP54 (Homo sapiens)	1624291	PMID:36590171	RGD	PMID:36590171
Usp54	Rat	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q70EL1 and ensembl:ENSP00000510226	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp54	Rat	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR001394	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Usp54	Rat	cysteine-type deubiquitinase activity	enables	ISS	UniProtKB:Q70EL1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Usp54	Rat	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp54	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp54	Rat	K63-linked deubiquitinase activity	enables	IEA	UniProtKB:Q70EL1 and ensembl:ENSP00000510226	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Usp54	Rat	K63-linked deubiquitinase activity	enables	ISO	USP54 (Homo sapiens)	1624291	PMID:39587316	RGD	PMID:39587316
Usp54	Rat	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Usp54	Rat	protein binding	enables	ISO	USP54 (Homo sapiens) and UniProtKB:Q70EL1-9	1624291	UniProtKB:A8MQ03 more ...	RGD	PMID:32296183 and PMID:32814053
Usp54	Rat	protein binding	enables	ISO	USP54 (Homo sapiens)	1624291	UniProtKB:O60573 more ...	RGD	PMID:16713569 more ...

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	A genomic analysis of rat proteases and protease inhibitors.	Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22.
3.	Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases.	Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:12477932	PMID:15057822

Usp54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI		GRCr8
mRatBN7.2	15	3,659,345 - 3,757,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,711 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	3,702,833 - 3,767,868 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,089,252 - 5,154,287 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,701,644 - 3,766,679 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,091,834 - 4,190,408 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,408 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	3,918,086 - 3,948,102 (+)	NCBI
Celera	15	836,782 - 901,563 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

USP54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,497,538 - 73,625,981 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,497,538 - 73,626,117 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	75,257,296 - 75,385,739 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,927,302 - 75,005,439 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	74,928,058 - 74,983,104	NCBI
Celera	10	68,542,895 - 68,621,030 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,250,909 - 69,328,906 (-)	NCBI		HuRef
CHM1_1	10	75,539,039 - 75,617,173 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,368,953 - 74,497,405 (-)	NCBI		T2T-CHM13v2.0

Usp54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,598,980 - 20,694,559 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,598,980 - 20,691,131 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	20,548,912 - 20,644,491 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,548,912 - 20,641,063 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	21,368,134 - 21,437,576 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,337,470 - 19,350,224 (-)	NCBI		MGSCv36	mm8
Celera	14	16,930,378 - 16,999,960 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Usp54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,258,024 - 18,321,481 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	18,240,303 - 18,322,197 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,673,298 - 85,803,740 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,678,621 - 85,812,641 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	70,044,872 - 70,173,486 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,503,267 - 72,630,127 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,503,267 - 72,596,502 (-)	Ensembl	panpan1.1		panPan2

USP54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	24,029,926 - 24,151,871 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	24,029,918 - 24,129,234 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	24,167,654 - 24,289,617 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,310,187 - 24,432,163 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,310,195 - 24,389,463 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,207,827 - 24,329,405 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,408,044 - 24,529,967 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,762,959 - 24,884,898 (-)	NCBI		UU_Cfam_GSD_1.0

Usp54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	56,939,580 - 57,066,973 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,489,787 - 5,558,962 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,432,420 - 5,559,698 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,307,230 - 76,377,006 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	76,307,223 - 76,439,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,432,756 - 82,498,581 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,665,388 - 57,780,712 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,665,674 - 57,779,632 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	18,242,681 - 18,361,899 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	7,098,591 - 7,169,981 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	7,099,565 - 7,226,067 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Usp54
264 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	437
Count of miRNA genes:	224
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000029615
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2266368	22711984	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1058250	14481294	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat

RH130110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,757,466 - 3,757,656 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,190,172 - 4,190,361	NCBI	Rnor6.0
Rnor_5.0	15	8,290,960 - 8,291,149	UniSTS	Rnor5.0
RGSC_v3.4	15	3,982,886 - 3,983,075	UniSTS	RGSC3.4
Celera	15	836,829 - 837,018	UniSTS
RH 3.4 Map	15	66.6	UniSTS
Cytogenetic Map	15	p16	UniSTS

BF411196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,747,571 - 3,747,666 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,180,278 - 4,180,372	NCBI	Rnor6.0
Rnor_5.0	15	8,281,066 - 8,281,160	UniSTS	Rnor5.0
RGSC_v3.4	15	3,972,992 - 3,973,086	UniSTS	RGSC3.4
Celera	15	846,818 - 846,912	UniSTS
RH 3.4 Map	15	65.7	UniSTS
Cytogenetic Map	15	p16	UniSTS

RH138305

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,730,389 - 3,730,538 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,163,097 - 4,163,245	NCBI	Rnor6.0
Rnor_5.0	15	8,263,885 - 8,264,033	UniSTS	Rnor5.0
RGSC_v3.4	15	3,955,811 - 3,955,959	UniSTS	RGSC3.4
Celera	15	863,954 - 864,102	UniSTS
RH 3.4 Map	15	66.2	UniSTS
Cytogenetic Map	15	p16	UniSTS

Ncl

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,699,188 - 3,699,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,131,898 - 4,132,470	NCBI	Rnor6.0
Rnor_5.0	15	8,233,441 - 8,234,013	UniSTS	Rnor5.0
RGSC_v3.4	15	3,924,612 - 3,925,184	UniSTS	RGSC3.4
Celera	15	894,468 - 895,040	UniSTS
Cytogenetic Map	15	p16	UniSTS
Cytogenetic Map	9	q35	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001008863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI282345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BN000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB557281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB726956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB727799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB749287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB794859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN931770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029615 ⟹ ENSRNOP00000038767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,703 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,125,373 - 4,190,408 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083467 ⟹ ENSRNOP00000068778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,703 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,366 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099921 ⟹ ENSRNOP00000097777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,683,291 - 3,757,711 (+)	Ensembl

RefSeq Acc Id:

NM_001008863 ⟹ NP_001008863

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,741,899 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,692,654 - 3,757,703 (+)	NCBI
Rnor_6.0	15	4,125,373 - 4,190,408 (+)	NCBI
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	RGD
Celera	15	836,782 - 901,563 (-)	RGD

Sequence:

show sequence

ATGTCTTGGAAAAGAAATTACTTTTCTGGAGGCCGAGGTAGCGTTCAAGGAATGTTTGCACCTCGGAGCTCAATGTCTATTGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTT
CCTCAATAGCGCGCTACAGGTTTTGTGGCACTTGGACATCTTCCGCCGCAGCTTTCGGCAGCTCACATCTCACAAGTGCATGGGCGATTCCTGCATCTTCTGTGCGCTCAAGGGCATCTTTAAGCAGT
TCCAGTGCAGTAGTGAAAAAGTGCTTCCTTCTGACACTCTCCGTAGTGCTCTGGCGAAGACTTTCCAGGATGAACAGCGTTTCCAGCTGGGGATTATGGATGACGCTGCAGAATGCTTTGAAAACCTC
CTGATGAGAATTCACTTCCATATCGCGGACGAAACCAAAGAGGATATATGTACTGCTCCACACTGCATTTCCCACCAGAAGTTTGCGATGACGTTGTTTGAGCAGTGTGTGTGCACGAGCTGCGGTGC
CACCTCTGACCCACTGCCCTTCATCCAGATGGTGCACTACATCTCCACCACTTCCCTTTGTAACCAGGCCATTTGTATGCTGGAAAAGCGGGAGAAACCTTCACCGGGTATGTTTGGTGAGCTGCTTC
AGAATGCCAGCACCATGGGGGACCTGCGGGACTGTCCGAGCAACTGTGGGGAGAGAATTCGGATCCGCCGTGTGTTGATGAATGCACCACAGATTATCACGATTGGGCTGGTTTGGGACTCAGACCAT
TCCGACTTGGCAGAGGATGTCATCCACAGTCTGGGCACCTGCCTTAAGTTGGGTGATCTGTTTTTCAGAGTGACAGATGACCGAGCCAAGCAGTCGGAGCTGTACTTAGTAGGAATGATCTGTTACTA
TGGCAAGCATTATTCTACATTCTTCTTTCAAACCAAGATCCGAAAATGGATGTATTTTGATGATGCTCATGTCAAGGAGATTGGTCCGAAGTGGAAGGACGTGGTGACCAAATGCATTAAAGGGCACT
ATCAGCCCTTGCTGCTGCTCTATGCAGATCCCCAGGGTACCCCCGTGTCTGCCCAGGACCTGCCTCCCCACGCTCAGTTGCTGTCACACACCAAGACATGCTACGACAGTGAAGACTCAGGACACCTG
ACTGACAGTGAATGTAATCAGAAACACACAACGAAGAAAGGGCCCCTGGTGGAGCGCAGGAGAGGCTCTGGCCGCATTCGGAGGAAAGCTGATGCCCCACAGGCCTCAGGCTATCACAGTGAAGGAGA
AACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCCAAATCCAGCAGCACCAGCAGGCTAAAGGATTTCAAAGAGACAGTCAGCAATATGATCCACAGCAGGCCTTCCTTGGCTTCTCAGACCAATG
CAGCATCTCCCTGTGTAGGCAGGGCAGGAGACCAGCCAGACAAGATACCAGCAAGGAACTTACCTCTACACTCTCGGGGCTGGGAAACGGAGAGTACCAGCAGTGAGGCAAGATCCAGTTCTTCCAGC
AAATACCGCCCAACATGGAGACCTAAACGAGAATCCCTAAATATTGACAGCATTTTCAGTAAGGACAAAAGGAAGCATTGTGGTTACACCCAGCTTAAGACCTTTCCTGAAGATGCAGCTAAAGAATT
TGCACAAGATGAAGTAAGCAATCCAGTTGCTAACGATATTAAAGATGGTGGACCAAGCTCACAGCATAAACTCTGGGGAACAGCCAGGCCAGGCTCTCATCTTTTAGAACAGCATCCTCGACTAATCC
AGCGGATGGAATCTGGCTATGAGAGCAGCGAGAGGAACAGCAGCAGCCCTGTCAGTTTGGATGCTGCCCCGCCTGAATGCTTGAATGTCTACAGGGATCAAAGCACAAAGAGAGCTGTTGGGTTTGTT
CCTTCTTGGCGTCATATCCCAAAGTCTCACAGCAGTAGCATCCTGGAAGTGGACTCCACAGCACCCGTGACTGGCTGGACAGAGACCCAACCTTTCTCAGATGGGGAGATCACCTCTAAAAGTGAGTT
GGATGAACTTCAGGAAGAAGTGGCCAGGCGGGCCCAGGAACAGGAACTTCGAAAGAAACGGGAGAAGGAATTAGAGGCTGCTAAAGGCTTTAATCCCCATCCTAGCCGATACATGGACTTGGATGAAC
TACAGAATCAGGGGAGGAGTGACGGCTTTGAAAGGTCCTTGCAAGAGGCAAATTCAGTATTTGAAGAGTCGCTGCATCTGGAGCAAGAGGGAGACTGTGCTGCCGCTCTGGCTCTCTGTAACGAAGCT
ATCTCTAAACTAAGACTTACCCTGCATGATGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGTTGCAAATCAGTATTCGAAAAGCTCGAAGCCTGCAAGATCGCATGCAGCAGCAGCC
ACCATCGCAGCAGCCGGTGCAGCCCTCAGCCTCTCTCCCATCACAGGGGGGCGGCCTCCCTCAGCCGACCAGTGAACAGTCTGTCCCGCTCCAAGTACTGCTAAGCCAGCAGACACAGCTGGAACCCT
GCAAGGATTCAGAGCTCGGCGCCACTTCCCCTTTCTTCCACTCACCTGCTTCCTGCCCTGAGCCACACTCATCCCTCGTCTCACCGTCACCTGCTCAGTCTGTCTCTCAGCACAGTCCTCCTGGGACG
TCTGCCTTGAAGCTCCTGAAGTCTTTTGAGGTGGATATCGTCAACCACTCTGCATTTCACAGGCAGGATTTACCTAAAGCAACAGGTAGAACTGAGATGAATTCTCAACATGAATGCCTGCCCTTTGA
TGCCCTTGAAGATAGGCTCCAAGGTCACAGGGAGGACAACAGCTGTTGTAGCAAATTCCCACCCCAAGAAGGAAGAGACACAACTCAAGATCAGCTGTTGGAAGGAAGGAAGACTCCTGTTGACATAT
CCATGGGGATGCCTTGGTCACATTCAGCAGGAGGAGCTACTTCTGAGAGAGTTATGCATAGCCTAAACAGTCCTTCAAGTCCATCAGCTCAGCCTGCTGTTCCCCCCTACGGTGCCTGCCACCCTATA
ATGTCTGCTGCTGCTTCACCTGTGCTTCATGCTGCTGACCCCATGCAGAAACTTAACCAACATCTCCAAGCCCAAAGTCTCCAAACTTCATTGGCTTCAAAAGTGGTCAGAGGCAGTGAGGAGCCCTA
TAGGCCAGAGTTCCCCAGTACAAAAGGCCTTGTCCGCTCATTGGCAGAGCAGTTCCAGAAGATTCGGAATACTTCCACGAGAGATGTTATAGGTTCCCAGGATCGAAGTTTGCCAAATGGTCTAAGGA
AGAGCTCTTCTCCTTCTGACTTTATGCTTCCATTATCCCAGGGTCCAGAAAAAGAACACTGTCGTTGGGTAAACCAGCCCCCTTCTCCAGATGGCAGGGAAAGACAGCCCTGCTGGGAAGAACCTGCA
GGGCATCCTTCTGTTTCCATTGACTCTGGGCTTCCTAATGGTGAAGCCTCGAGGAGAAGACAGCCCAGACTGGCCGAGGCAGACATATACCAAGGAAAGCTACCCCAAGTGACAGATACTAGGCCCAC
GGAGCTGGGCAGTAGTGTCAGCTTGGGGACTTCTTTGCCTTTGGATTCTTGGGTAAATGTCACAAGGCTCTGTGATTCTCAAGTTAAACACAGGGCTCCTGGGCTAGGAGTCAAGTCCTCCTCCCATG
ATTCCCGTACATGTGTAACCTATCCAGAAAGAAATCCTATCCTTTTGCATCCACACTGGAACCAAGACACAGAGCAGGAGACGTCTGAACTGGAGTCTCTCTACCAAGCCAGTCTCCAGGCCTCCTCT
CATACTGGCTATTCTGATTGGAGGTCACAGGATGTGGCCTGGCAGCCACTTAGCCTAACAGGTTCTGCAGATGGCATGGGGAGGAGACTGCACTCAGCCCCTGGTCTTGATCTTTCAAAGACTCCAAC
AGCAGAAATGGAGCGCATTCTTTATGAACCGAGTACAGTGCCTGTCTCTCAGGATTCATCAAACGTGAGGAAAAAGACTTTGGAAACCGGGCACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCC
ATGATCCTCCTGTATTTCTCCTTGATCCTAAACTCTACCCTCCCCAACCACAGTTCCTGTCCCCAGATGTCCTGATGCCCAGCATGGCAGGGGAGCCCTATAGATCCCCAGGAACTTCGAGGAGTGTC
CAACAGTTTCTGGCTATGTGTGACAGGGATGAAACTCCCCAAGGGGTCAAGTACACAGGAAGGACTTTGAACTACCGAAGTCTACCTCATCGTTCCAGAACTGATGCTTCCTGGGGACCAGGGACAGA
AACCAACCAGCACATTGGGGCCAGAGTCTTAACTGCGCCAGCATGCAAGCCTCAGCTAACCTACACTGCCACACTACCAGAAAGACACCAGGGCCTTCAGGTTCCTCATGCTCAGTCCTGGGGCAATC
TTTTCCACTTACCCTCCCATCCTTCTGCTGTTCACCCAGGGTCCCCACCATCCAGCAGTCTTCATGTACTCCATAGGTCATCTTGGAATTCGGGTTCTGTTCTGGGGTCCCGAACACCTGGTCCTCGA
CGAATAGACGTGCCCCCAGATGATGACGGGAGACAGAGCCAATACCCCTCTCAGTATAGACACAGGAGTGCAGGGGAGGAGAGAGTTAGGTTTGCTCTGTCAAACACTGCGGGCACAGAGCAGAGCAG
GGTGAGACTGCTACAGCACAGCAGGTGGTAAGAGCTACCCCAACCTGCCCTGGGGCCACACCTCCTCTAGAACCTGTATGGTGGCACAGTGGTACCTTGAGTCCTGCCAGTTATGCCATTCTTGTCTC
AGCGTCGACTTGGTCATTTCCCGCCAGGCATTGCGCCTGCAATCCCCGAGGTCCGCAGTTGAAGGTAGAGGCTGCACAGTCGCATTTCCAGGCCAGGAACTCTGGGTAAAAAGAGACCATGGGTCTTT
CTCTTTTTTCCGTTTCTTTCTTTTTAAAAAAAGAACAGAACCACGACAACAAAAAAGATGTTGATTTTTTTTCCTAAAGGTGTTTGCTTCTTTGGGATGGAATATTTGAAATTCCAGCTTTAGCGCTG
GGGATGTAGCTCAGTTGGTAGAGGGTTTTCTTAACACGCAAATCACCGGGGTTCTATCCTAGCAGTGTGTGAAACCGCATGGTGGTGCACACCTGTCACCCTGGCACTTGGGAGGTGGGGGTAGGAGG
ATCAGAGGTTCAGATTCATCCTTGGCTACATAGCAAGTTCTAGGCTTGTCTGGGCTACTTTATTTCTGGTTTCTTTTAGCCCCCATCTCCATCAGAGCCCTCAACTCCTGGCCCTACTATATTCCCAA
CTTATACTCCTTGTTTATCCACCTGTCCATATTACCTAACTCCCTTCCCCATCTCCTGTCAGTAGTCAGGATTCTGATCATGTTCTTAAGGGAAGCTCAGCTGCCCAGGTGTGGCCTGTCAGCCTTCC
TCGTGACTCAGACCATAGGCCTGGAGTGGGGAGCTGCCAATAGACTATTTGCCCTTCTGAACAGGTGGCGTTGGGCACACTAACACTCCCTCCTGTCCTCAGCAGCAGAGCCATTACTGCCACTTGCT
CAGTCACCCTTAAACTCTCAAGAGTCAGCTAAACTATTTTAGGGCAGAGCATACTGTTTTTGTAAAGTATTTTTCATTAATAAATCTGTAAGATAGTTGTATTTAA

hide sequence

RefSeq Acc Id:

XM_017599770 ⟹ XP_017455259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,681,455 - 3,757,703 (+)	NCBI
Rnor_6.0	15	4,114,726 - 4,190,408 (+)	NCBI

Sequence:

show sequence

GGCAGTACCACTCTGAATGTGGGCAGCACCATGCCTTAGGGGTCTGGATTGAGATAAAAGTTTGCCCATTCTCTGCTCTGCTTCTGGTGACTGACCACTGCAGTGTGACTGTTGTCCATGCTTCTTCA
GCTAAGCCTTTCCTGCTGTGAGCCAAAGTAGTTTTTCTCAATTTGCTTTGTCAGGTATTTTCTTGTAGAGAAAAGAACAAATGCACTGTAGGCAGCTTTCCGGTTTAGCACTGGTAGTAGAAGTGTGC
GCTTTTGCCGTGCTTCCGTGCCTTGGCACTAGGAATGAGAAGACCTGGTCAGAACGCCAACAGTGAGCAGGAGAAGCAGGATCTTTTTCTCTTAAACTTGGTACTTGCTGTGCTGCCAAAGGACTACT
TTACTTTAAGCATATTATTAAAATGTAAGCTTAATTAGTTTTGGGCAGTGTCCATAGTTGCTTAATTTTACCAATAAACTTTAATTAAATCTTGTTTTAGTGACCTCAAGTATTTTCTCTCAAGGTAT
AGAAATATAGCCAACTTTCATAAATGGCAAGAATTTTGCTGATTGAGTTTTCCTCAGTTGCTTAATAAAGCAACTGGTTTCAGTAAAGCTGTTTAATAGCAGAGTGACACATAGAAGCCTGCCTGCTG
GCCCCTGGGCCTCTATGCCCTGCCTGCAGAGGCCAGCTCTGTTTGACTGATGCCATGGTTCGGGGGGCACCCAGCCGCAGCTCCCTAAAGAGGTGTGAAGATCTTAGCTGGAACAGCCTTTAGATTCA
GGTCGTTTTAAAAGAATTTAAATTCACAGAATTCCCTAATTTCTTTTAGCGTGGCCCATTTTAATGTTTAAGACAGAAGACTTTTGCCCATTAAAATGGTTTCACTGCGGATAGTCTTGGGATTTTGA
ACTGATTCAGGCAGCATTGTTTTGGTGATTCTCTAGGGCACTGCAAAGGTGTCTTCTCACAGACACCACATAAAGGGTTCTTTTAGGACCAGCCCTTTGGAAGCAGCTGCCCCCCCTGCAAACCCTGT
GTTTTGATGACCTTGTGTTCGGGAATGCCTTTGGAGAAAGCAGCCTCATAGTTGTTAAAAGCCTCCAGTGAAGTCTGTCCTGAATGGTTAGTTCCTTCAGTTTAGCTTCTCAATGAATTGCTCTTGGT
AGTTGGCAAAAAAATTGTTTTACCCCTGATATCCTGTTCTGTGCCTTTGTGGTTAGATGAACAGTTTCCCATTGTTACTCTGTCTCCTCCCTCTGTACCCTTGCCTCTGTTCCACTCCTGTGCCACTT
GCCCCACAAATGCCCTTGTGAGTGCTGAAGTTTTTTGCTGAGCTCGAATGGGTTGTCTGCTCTCAGGCACAGCTGGCTATTCTGGTCTCAGAAGAAAAGAGAAGAGGCTTTCTGAAGGTCTGGTAGAG
AGGAGAGAAGGAACTTGGAATACAGCTGAAAGGTGGTGTAGCGAAACAGCAGCAGCAGTCCTACCGAGAAAGGACCCAGACGACGTCTCCGCTGGTTAGAGCTTGTCTCTAGAAGATGGTGAGCCACG
GCACCAAGGGGATGAGGAGTGCCTTGGGTTCCTGCGCCTTCCTTCAGTCTTCAGTCCTCCAGAAGCACTATAAAGAGGGCTGAAGAACAAGCTTGCTTGGTCCCGGACGCTGTTGTCTTGAAGATTCC
GTCTGTCCCACCAGGACTTTAGGGAGGCAGTTTCAGCAACAGAGAAGGAAGCAGGACTTAAGGACGTCTCTACATTGGTCGTGTGCCTAGTTACATTTTGAACAGTGGGCGGGTGAAGGGCAGCTTTG
GCACCTGGCTCTAAGGAGACACCTGAATTCCCTGAGTTTACAGATGTGATGTTTGAGGACTGCAAAAGACACAGGTCCCTTGCCAAAAAGATATAAAGCCTCCTTTCCCCCACTTTTGGGCTAATGTG
AACAATAATGTCTTGGAAAAGAAATTACTTTTCTGGAGGCCGAGGTAGCGTTCAAGGAATGTTTGCACCTCGGAGCTCAATGTCTATTGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACA
GCTGCTTCCTCAATAGCGCGCTACAGGTTTTGTGGCACTTGGACATCTTCCGCCGCAGCTTTCGGCAGCTCACATCTCACAAGTGCATGGGCGATTCCTGCATCTTCTGTGCGCTCAAGGGCATCTTT
AAGCAGTTCCAGTGCAGTAGTGAAAAAGTGCTTCCTTCTGACACTCTCCGTAGTGCTCTGGCGAAGACTTTCCAGGATGAACAGCGTTTCCAGCTGGGGATTATGGATGACGCTGCAGAATGCTTTGA
AAACCTCCTGATGAGAATTCACTTCCATATCGCGGACGAAACCAAAGAGGATATATGTACTGCTCCACACTGCATTTCCCACCAGAAGTTTGCGATGACGTTGTTTGAGCAGTGTGTGTGCACGAGCT
GCGGTGCCACCTCTGACCCACTGCCCTTCATCCAGATGGTGCACTACATCTCCACCACTTCCCTTTGTAACCAGGCCATTTGTATGCTGGAAAAGCGGGAGAAACCTTCACCGGGTATGTTTGGTGAG
CTGCTTCAGAATGCCAGCACCATGGGGGACCTGCGGGACTGTCCGAGCAACTGTGGGGAGAGAATTCGGATCCGCCGTGTGTTGATGAATGCACCACAGATTATCACGATTGGGCTGGTTTGGGACTC
AGACCATTCCGACTTGGCAGAGGATGTCATCCACAGTCTGGGCACCTGCCTTAAGTTGGGTGATCTGTTTTTCAGAGTGACAGATGACCGAGCCAAGCAGTCGGAGCTGTACTTAGTAGGAATGATCT
GTTACTATGGCAAGCATTATTCTACATTCTTCTTTCAAACCAAGATCCGAAAATGGATGTATTTTGATGATGCTCATGTCAAGGAGATTGGTCCGAAGTGGAAGGACGTGGTGACCAAATGCATTAAA
GGGCACTATCAGCCCTTGCTGCTGCTCTATGCAGATCCCCAGGGTACCCCCGTGTCTGCCCAGGACCTGCCTCCCCACGCTCAGTTGCTGTCACACACCAAGACATGCTACGACAGTGAAGACTCAGG
GAGGGAGCCTTCCATCTCAAGTGATACTCGAACAGATTCCTCAACGGAGAGCTATCCCTACAAACAGTCTCACCATGAGTCTGTGGTCAGTCACTTCTCTTCCGATTCTCAGGGGACAGTCATCTATA
ATGTGGAGAATGATTCCATGTCTCAGAGCAGTCGGGACACAGGACACCTGACTGACAGTGAATGTAATCAGAAACACACAACGAAGAAAGGGCCCCTGGTGGAGCGCAGGAGAGGCTCTGGCCGCATT
CGGAGGAAAGCTGATGCCCCACAGGCCTCAGGCTATCACAGTGAAGGAGAAACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCCAAATCCAGCAGCACCAGCAGGCTAAAGGATTTCAAAGAGAC
AGTCAGCAATATGATCCACAGCAGGCCTTCCTTGGCTTCTCAGACCAATGCAGCATCTCCCTGTGTAGGCAGGGCAGGAGACCAGCCAGACAAGATACCAGCAAGGAACTTACCTCTACACTCTCGGG
GCTGGGAAACGGAGAGTACCAGCAGTGAGGCAAGATCCAGTTCTTCCAGCAAATACCGCCCAACATGGAGACCTAAACGAGAATCCCTAAATATTGACAGCATTTTCAGTAAGGACAAAAGGAAGCAT
TGTGGTTACACCCAGCTTAAGACCTTTCCTGAAGATGCAGCTAAAGAATTTGCACAAGATGAAGTAAGCAATCCAGTTGCTAACGATATTAAAGATGGTGGACCAAGCTCACAGCATAAACTCTGGGG
AACAGCCAGGCCAGGCTCTCATCTTTTAGAACAGCATCCTCGACTAATCCAGCGGATGGAATCTGGCTATGAGAGCAGCGAGAGGAACAGCAGCAGCCCTGTCAGTTTGGATGCTGCCCCGCCTGAAT
GCTTGAATGTCTACAGGGATCAAAGCACAAAGAGAGCTGTTGGGTTTGTTCCTTCTTGGCGTCATATCCCAAAGTCTCACAGCAGTAGCATCCTGGAAGTGGACTCCACAGCACCCGTGACTGGCTGG
ACAGAGACCCAACCTTTCTCAGATGGGGAGATCACCTCTAAAAGTGAGTTGGATGAACTTCAGGAAGAAGTGGCCAGGCGGGCCCAGGAACAGGAACTTCGAAAGAAACGGGAGAAGGAATTAGAGGC
TGCTAAAGGCTTTAATCCCCATCCTAGCCGATACATGGACTTGGATGAACTACAGAATCAGGGGAGGAGTGACGGCTTTGAAAGGTCCTTGCAAGAGGCAAATTCAGTATTTGAAGAGTCGCTGCATC
TGGAGCAAGAGGGAGACTGTGCTGCCGCTCTGGCTCTCTGTAACGAAGCTATCTCTAAACTAAGACTTACCCTGCATGATGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGTTGCAA
ATCAGTATTCGAAAAGCTCGAAGCCTGCAAGATCGCATGCAGCAGCAGCCACCATCGCAGCAGCCGGTGCAGCCCTCAGCCTCTCTCCCATCACAGGGGGGCGGCCTCCCTCAGCCGACCAGTGAACA
GTCTGTCCCGCTCCAAGTACTGCTAAGCCAGCAGACACAGCTGGAACCCTGCAAGGATTCAGAGCTCGGCGCCACTTCCCCTTTCTTCCACTCACCTGCTTCCTGCCCTGAGCCACACTCATCCCTCG
TCTCACCGTCACCTGCTCAGTCTGTCTCTCAGCACAGTCCTCCTGGGACGTCTGCCTTGAAGCTCCTGAAGTCTTTTGAGGTGGATATCGTCAACCACTCTGCATTTCACAGGCAGGATTTACCTAAA
GCAACAGGTAGAACTGAGATGAATTCTCAACATGAATGCCTGCCCTTTGATGCCCTTGAAGATAGGCTCCAAGGTCACAGGGAGGACAACAGCTGTTGTAGCAAATTCCCACCCCAAGAAGGAAGAGA
CACAACTCAAGATCAGCTGTTGGAAGGAAGGAAGACTCCTGTTGACATATCCATGGGGATGCCTTGGTCACATTCAGCAGGAGGAGCTACTTCTGAGAGAGTTATGCATAGCCTAAACAGTCCTTCAA
GTCCATCAGCTCAGCCTGCTGTTCCCCCCTACGGTGCCTGCCACCCTATAATGTCTGCTGCTGCTTCACCTGTGCTTCATGCTGCTGACCCCATGCAGAAACTTAACCAACATCTCCAAGCCCAAAGT
CTCCAAACTTCATTGGCTTCAAAAGTGGTCAGAGGCAGTGAGGAGCCCTATAGGCCAGAGTTCCCCAGTACAAAAGGCCTTGTCCGCTCATTGGCAGAGCAGTTCCAGAAGATTCGGAATACTTCCAC
GAGAGATGTTATAGGTTCCCAGGATCGAAGTTTGCCAAATGGTCTAAGGAAGAGCTCTTCTCCTTCTGACTTTATGCTTCCATTATCCCAGGGTCCAGAAAAAGAACACTGTCGTTGGGTAAACCAGC
CCCCTTCTCCAGATGGCAGGGAAAGACAGCCCTGCTGGGAAGAACCTGCAGGGCATCCTTCTGTTTCCATTGACTCTGGGCTTCCTAATGGTGAAGCCTCGAGGAGAAGACAGCCCAGACTGGCCGAG
GCAGACATATACCAAGGAAAGCTACCCCAAGTGACAGATACTAGGCCCACGGAGCTGGGCAGTAGTGTCAGCTTGGGGACTTCTTTGCCTTTGGATTCTTGGGTAAATGTCACAAGGCTCTGTGATTC
TCAAGTTAAACACAGGGCTCCTGGGCTAGGAGTCAAGTCCTCCTCCCATGATTCCCGTACATGTGTAACCTATCCAGAAAGAAATCCTATCCTTTTGCATCCACACTGGAACCAAGACACAGAGCAGG
AGACGTCTGAACTGGAGTCTCTCTACCAAGCCAGTCTCCAGGCCTCCTCTCATACTGGCTATTCTGATTGGAGGTCACAGGATGTGGCCTGGCAGCCACTTAGCCTAACAGGTTCTGCAGATGGCATG
GGGAGGAGACTGCACTCAGCCCCTGGTCTTGATCTTTCAAAGACTCCAACAGCAGAAATGGAGCGCATTCTTTATGAACCGAGTACAGTGCCTGTCTCTCAGGATTCATCAAACGTGAGGAAAAAGAC
TTTGGAAACCGGGCACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGATCCTCCTGTATTTCTCCTTGATCCTAAACTCTACCCTCCCCAACCACAGTTCCTGTCCCCAGATGTCCTGATGC
CCAGCATGGCAGGGGAGCCCTATAGATCCCCAGGAACTTCGAGGAGTGTCCAACAGTTTCTGGCTATGTGTGACAGGGATGAAACTCCCCAAGGGGTCAAGTACACAGGAAGGACTTTGAACTACCGA
AGTCTACCTCATCGTTCCAGAACTGATGCTTCCTGGGGACCAGGGACAGAAACCAACCAGCACATTGGGGCCAGAGTCTTAACTGCGCCAGCATGCAAGCCTCAGCTAACCTACACTGCCACACTACC
AGAAAGACACCAGGGCCTTCAGGTTCCTCATGCTCAGTCCTGGGGCAATCTTTTCCACTTACCCTCCCATCCTTCTGCTGTTCACCCAGGGTCCCCACCATCCAGCAGTCTTCATGTACTCCATAGGT
CATCTTGGAATTCGGGTTCTGTTCTGGGGTCCCGAACACCTGGTCCTCGACGAATAGACGTGCCCCCAGATGATGACGGGAGACAGAGCCAATACCCCTCTCAGTATAGACACAGGAGTGCAGGGGAG
GAGAGAGTTAGGTTTGCTCTGTCAAACACTGCGGGCACAGAGCAGAGCAGGGTGAGACTGCTACAGCACAGCAGGTGGTAAGAGCTACCCCAACCTGCCCTGGGGCCACACCTCCTCTAGAACCTGTA
TGGTGGCACAGTGGTACCTTGAGTCCTGCCAGTTATGCCATTCTTGTCTCAGCGTCGACTTGGTCATTTCCCGCCAGGCATTGCGCCTGCAATCCCCGAGGTCCGCAGTTGAAGGTAGAGGCTGCACA
GTCGCATTTCCAGGCCAGGAACTCTGGGTAAAAAGAGACCATGGGTCTTTCTCTTTTTTCCGTTTCTTTCTTTTTAAAAAAAGAACAGAACCACGACAACAAAAAAGATGTTGATTTTTTTTCCTAAA
GGTGTTTGCTTCTTTGGGATGGAATATTTGAAATTCCAGCTTTAGCGCTGGGGATGTAGCTCAGTTGGTAGAGGGTTTTCTTAACACGCAAATCACCGGGGTTCTATCCTAGCAGTGTGTGAAACCGC
ATGGTGGTGCACACCTGTCACCCTGGCACTTGGGAGGTGGGGGTAGGAGGATCAGAGGTTCAGATTCATCCTTGGCTACATAGCAAGTTCTAGGCTTGTCTGGGCTACTTTATTTCTGGTTTCTTTTA
GCCCCCATCTCCATCAGAGCCCTCAACTCCTGGCCCTACTATATTCCCAACTTATACTCCTTGTTTATCCACCTGTCCATATTACCTAACTCCCTTCCCCATCTCCTGTCAGTAGTCAGGATTCTGAT
CATGTTCTTAAGGGAAGCTCAGCTGCCCAGGTGTGGCCTGTCAGCCTTCCTCGTGACTCAGACCATAGGCCTGGAGTGGGGAGCTGCCAATAGACTATTTGCCCTTCTGAACAGGTGGCGTTGGGCAC
ACTAACACTCCCTCCTGTCCTCAGCAGCAGAGCCATTACTGCCACTTGCTCAGTCACCCTTAAACTCTCAAGAGTCAGCTAAACTATTTTAGGGCAGAGCATACTGTTTTTGTAAAGTATTTTTCATT
AATAAATCTGTAAGATAGTTGTATTTAA

hide sequence

RefSeq Acc Id:

XM_039093573 ⟹ XP_038949501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,681,458 - 3,757,703 (+)	NCBI

RefSeq Acc Id:

XM_039093576 ⟹ XP_038949504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,794,065 (+)	NCBI
mRatBN7.2	15	3,681,452 - 3,744,842 (+)	NCBI

RefSeq Acc Id:

XM_039093577 ⟹ XP_038949505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,798,587 (+)	NCBI
mRatBN7.2	15	3,681,453 - 3,745,304 (+)	NCBI

RefSeq Acc Id:

XM_063274515 ⟹ XP_063130585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274516 ⟹ XP_063130586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274517 ⟹ XP_063130587

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,449 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274518 ⟹ XP_063130588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274519 ⟹ XP_063130589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,484 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274521 ⟹ XP_063130591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,484 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274522 ⟹ XP_063130592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274523 ⟹ XP_063130593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,709,377 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274524 ⟹ XP_063130594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274525 ⟹ XP_063130595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,401 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274527 ⟹ XP_063130597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274528 ⟹ XP_063130598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,709,377 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274529 ⟹ XP_063130599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,736,221 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274530 ⟹ XP_063130600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,720,411 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274531 ⟹ XP_063130601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,735,480 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274532 ⟹ XP_063130602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274533 ⟹ XP_063130603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274534 ⟹ XP_063130604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274535 ⟹ XP_063130605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274536 ⟹ XP_063130606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274537 ⟹ XP_063130607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274538 ⟹ XP_063130608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274539 ⟹ XP_063130609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274540 ⟹ XP_063130610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274541 ⟹ XP_063130611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,778,583 - 3,806,935 (+)	NCBI


Protein RefSeqs	NP_001008863	(Get FASTA)	NCBI Sequence Viewer
	XP_017455259	(Get FASTA)	NCBI Sequence Viewer
	XP_038949501	(Get FASTA)	NCBI Sequence Viewer
	XP_038949504	(Get FASTA)	NCBI Sequence Viewer
	XP_038949505	(Get FASTA)	NCBI Sequence Viewer
	XP_063130585	(Get FASTA)	NCBI Sequence Viewer
	XP_063130586	(Get FASTA)	NCBI Sequence Viewer
	XP_063130587	(Get FASTA)	NCBI Sequence Viewer
	XP_063130588	(Get FASTA)	NCBI Sequence Viewer
	XP_063130589	(Get FASTA)	NCBI Sequence Viewer
	XP_063130591	(Get FASTA)	NCBI Sequence Viewer
	XP_063130592	(Get FASTA)	NCBI Sequence Viewer
	XP_063130593	(Get FASTA)	NCBI Sequence Viewer
	XP_063130594	(Get FASTA)	NCBI Sequence Viewer
	XP_063130595	(Get FASTA)	NCBI Sequence Viewer
	XP_063130597	(Get FASTA)	NCBI Sequence Viewer
	XP_063130598	(Get FASTA)	NCBI Sequence Viewer
	XP_063130599	(Get FASTA)	NCBI Sequence Viewer
	XP_063130600	(Get FASTA)	NCBI Sequence Viewer
	XP_063130601	(Get FASTA)	NCBI Sequence Viewer
	XP_063130602	(Get FASTA)	NCBI Sequence Viewer
	XP_063130603	(Get FASTA)	NCBI Sequence Viewer
	XP_063130604	(Get FASTA)	NCBI Sequence Viewer
	XP_063130605	(Get FASTA)	NCBI Sequence Viewer
	XP_063130606	(Get FASTA)	NCBI Sequence Viewer
	XP_063130607	(Get FASTA)	NCBI Sequence Viewer
	XP_063130608	(Get FASTA)	NCBI Sequence Viewer
	XP_063130609	(Get FASTA)	NCBI Sequence Viewer
	XP_063130610	(Get FASTA)	NCBI Sequence Viewer
	XP_063130611	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97982	(Get FASTA)	NCBI Sequence Viewer
	CAE51895	(Get FASTA)	NCBI Sequence Viewer
	EDL86235	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038767
	ENSRNOP00000038767.4
	ENSRNOP00000068778
	ENSRNOP00000097777.1
GenBank Protein	Q6IE24	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008863 ⟸ NM_001008863

- UniProtKB:

Q4QQU8 (UniProtKB/Swiss-Prot), Q6IE24 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSWKRNYFSGGRGSVQGMFAPRSSMSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQLTSHKCMGDSCIFCALKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENL
LMRIHFHIADETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLVWDSDH
SDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSAQDLPPHAQLLSHTKTCYDSEDSGHL
TDSECNQKHTTKKGPLVERRRGSGRIRRKADAPQASGYHSEGETLKEKQAPRNASKSSSTSRLKDFKETVSNMIHSRPSLASQTNAASPCVGRAGDQPDKIPARNLPLHSRGWETESTSSEARSSSSS
KYRPTWRPKRESLNIDSIFSKDKRKHCGYTQLKTFPEDAAKEFAQDEVSNPVANDIKDGGPSSQHKLWGTARPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAAPPECLNVYRDQSTKRAVGFV
PSWRHIPKSHSSSILEVDSTAPVTGWTETQPFSDGEITSKSELDELQEEVARRAQEQELRKKREKELEAAKGFNPHPSRYMDLDELQNQGRSDGFERSLQEANSVFEESLHLEQEGDCAAALALCNEA
ISKLRLTLHDASSSTHSRALVDKKLQISIRKARSLQDRMQQQPPSQQPVQPSASLPSQGGGLPQPTSEQSVPLQVLLSQQTQLEPCKDSELGATSPFFHSPASCPEPHSSLVSPSPAQSVSQHSPPGT
SALKLLKSFEVDIVNHSAFHRQDLPKATGRTEMNSQHECLPFDALEDRLQGHREDNSCCSKFPPQEGRDTTQDQLLEGRKTPVDISMGMPWSHSAGGATSERVMHSLNSPSSPSAQPAVPPYGACHPI
MSAAASPVLHAADPMQKLNQHLQAQSLQTSLASKVVRGSEEPYRPEFPSTKGLVRSLAEQFQKIRNTSTRDVIGSQDRSLPNGLRKSSSPSDFMLPLSQGPEKEHCRWVNQPPSPDGRERQPCWEEPA
GHPSVSIDSGLPNGEASRRRQPRLAEADIYQGKLPQVTDTRPTELGSSVSLGTSLPLDSWVNVTRLCDSQVKHRAPGLGVKSSSHDSRTCVTYPERNPILLHPHWNQDTEQETSELESLYQASLQASS
HTGYSDWRSQDVAWQPLSLTGSADGMGRRLHSAPGLDLSKTPTAEMERILYEPSTVPVSQDSSNVRKKTLETGHHCSSSSSLPVIHDPPVFLLDPKLYPPQPQFLSPDVLMPSMAGEPYRSPGTSRSV
QQFLAMCDRDETPQGVKYTGRTLNYRSLPHRSRTDASWGPGTETNQHIGARVLTAPACKPQLTYTATLPERHQGLQVPHAQSWGNLFHLPSHPSAVHPGSPPSSSLHVLHRSSWNSGSVLGSRTPGPR
RIDVPPDDDGRQSQYPSQYRHRSAGEERVRFALSNTAGTEQSRVRLLQHSRW

hide sequence

RefSeq Acc Id:	XP_017455259 ⟸ XM_017599770
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWKRNYFSGGRGSVQGMFAPRSSMSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQL TSHKCMGDSCIFCALKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCN QAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDD AHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSAQDLPPHAQLLSHTKTCYDSEDSGREPSISSDTRTDSSTESYPYKQSHHESVVSHFSSDSQGTVIYNVENDSMSQSSRDTGHLTDSECNQ KHTTKKGPLVERRRGSGRIRRKADAPQASGYHSEGETLKEKQAPRNASKSSSTSRLKDFKETVSNMIHSRPSLASQTNAASPCVGRAGDQPDKIPARNLPLHSRGWETESTSSEARSSSSSKYRPTWR PKRESLNIDSIFSKDKRKHCGYTQLKTFPEDAAKEFAQDEVSNPVANDIKDGGPSSQHKLWGTARPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAAPPECLNVYRDQSTKRAVGFVPSWRHIP KSHSSSILEVDSTAPVTGWTETQPFSDGEITSKSELDELQEEVARRAQEQELRKKREKELEAAKGFNPHPSRYMDLDELQNQGRSDGFERSLQEANSVFEESLHLEQEGDCAAALALCNEAISKLRLT LHDASSSTHSRALVDKKLQISIRKARSLQDRMQQQPPSQQPVQPSASLPSQGGGLPQPTSEQSVPLQVLLSQQTQLEPCKDSELGATSPFFHSPASCPEPHSSLVSPSPAQSVSQHSPPGTSALKLLK SFEVDIVNHSAFHRQDLPKATGRTEMNSQHECLPFDALEDRLQGHREDNSCCSKFPPQEGRDTTQDQLLEGRKTPVDISMGMPWSHSAGGATSERVMHSLNSPSSPSAQPAVPPYGACHPIMSAAASP VLHAADPMQKLNQHLQAQSLQTSLASKVVRGSEEPYRPEFPSTKGLVRSLAEQFQKIRNTSTRDVIGSQDRSLPNGLRKSSSPSDFMLPLSQGPEKEHCRWVNQPPSPDGRERQPCWEEPAGHPSVSI DSGLPNGEASRRRQPRLAEADIYQGKLPQVTDTRPTELGSSVSLGTSLPLDSWVNVTRLCDSQVKHRAPGLGVKSSSHDSRTCVTYPERNPILLHPHWNQDTEQETSELESLYQASLQASSHTGYSDW RSQDVAWQPLSLTGSADGMGRRLHSAPGLDLSKTPTAEMERILYEPSTVPVSQDSSNVRKKTLETGHHCSSSSSLPVIHDPPVFLLDPKLYPPQPQFLSPDVLMPSMAGEPYRSPGTSRSVQQFLAMC DRDETPQGVKYTGRTLNYRSLPHRSRTDASWGPGTETNQHIGARVLTAPACKPQLTYTATLPERHQGLQVPHAQSWGNLFHLPSHPSAVHPGSPPSSSLHVLHRSSWNSGSVLGSRTPGPRRIDVPPD DDGRQSQYPSQYRHRSAGEERVRFALSNTAGTEQSRVRLLQHSRW hide sequence

Ensembl Acc Id:

ENSRNOP00000068778 ⟸ ENSRNOT00000083467

Ensembl Acc Id:

ENSRNOP00000038767 ⟸ ENSRNOT00000029615

RefSeq Acc Id:	XP_038949504 ⟸ XM_039093576
- Peptide Label:	isoform X9

Protein Domains

USP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6IE24-F1-model_v2	AlphaFold	Q6IE24	1-1588	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-14549	BioCyc
Ensembl Genes	ENSRNOG00000027012	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000029615	ENTREZGENE
	ENSRNOT00000029615.5	UniProtKB/Swiss-Prot
	ENSRNOT00000083467	ENTREZGENE
	ENSRNOT00000099921.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Cysteine proteinases	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7443440	IMAGE-MGC_LOAD
InterPro	Inactive_ubiquitin_hydrolase	UniProtKB/Swiss-Prot
	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot
	USP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:408223	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116116	IMAGE-MGC_LOAD
NCBI Gene	408223	ENTREZGENE
PANTHER	PTHR22975:SF5	UniProtKB/Swiss-Prot
	UBIQUITIN SPECIFIC PROTEINASE	UniProtKB/Swiss-Prot
Pfam	UCH	UniProtKB/Swiss-Prot
PhenoGen	Usp54	PhenoGen
PROSITE	USP_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000027012	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot
UniProt	A0A0G2JTN3	ENTREZGENE, UniProtKB/TrEMBL
	A6KKN9	ENTREZGENE, UniProtKB/TrEMBL
	A6KKP1	ENTREZGENE, UniProtKB/TrEMBL
	Q4QQU8	ENTREZGENE
	Q6IE24	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q4QQU8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Usp54	ubiquitin specific peptidase 54	Usp54	ubiquitin specific protease 54	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-14	Usp54	ubiquitin specific protease 54			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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