Oryza sativa ssp japonica cv. Nipponbare LOC_Os02g13300 RGAP (Osa1) Release 7 Annotation
Download Sequence | Show LOC_Os02g13300 in Rice Genome Browser
Gene Identification
Gene Product Name:mitochondrial carrier protein, putative, expressed
Locus Name:LOC_Os02g13300.1
Alternative Splice Form:LOC_Os02g13300.2
 
Gene Ontology Classification
GO accession Type Name Code With
GO:0006810 biological_process transport IEA TAIR:AT4G26180
GO:0016020 cellular_component membrane IEA TAIR:AT4G26180
GO:0009987 biological_process cellular process IEA TAIR:AT4G26180
GO:0005739 cellular_component mitochondrion IEA TAIR:AT4G26180
GO:0005488 molecular_function binding IEA TAIR:AT4G26180
GO:0005215 molecular_function transporter activity IEA TAIR:AT4G26180
 
Gene Attributes
Chromosome:Chr2
CDS Coordinates (5'-3'):7083194 - 7087390
Nucleotide length:1029
Predicted protein length:343
Predicted molecular weight:37218.0703
Predicted pI:10.0714998
 
Coexpression Module Assignment
Module ID Module Peak Expression
7 Seedling-Salt stress-24 hr
PFAM hits
Accession Name Match Start Match End E-value
PF00153.20 Mito_carr 26 110 9.8e-22
PF00153.20 Mito_carr 120 221 2.2e-27
PF00153.20 Mito_carr 226 316 2e-20
 
Interpro hits
Interpro Acc Method Method Desc Match Start Match End
  Seg seg 2 21
IPR001993 superfamily Mitochondrial carrier 20 312
IPR018108 ProfileScan SOLCAR 23 109
IPR002113 FPrintScan ADPTRNSLCASE 25 37
  HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 25 324
IPR001993 HMMPanther MITOCHONDRIAL CARRIER PROTEIN RELATED 25 324
IPR018108 HMMPfam Mito_carr 26 110
IPR002067 FPrintScan MITOCARRIER 28 41
  Seg seg 30 44
IPR002067 FPrintScan MITOCARRIER 41 55
IPR002067 FPrintScan MITOCARRIER 84 104
IPR018108 ProfileScan SOLCAR 119 218
IPR018108 HMMPfam Mito_carr 120 221
IPR002067 FPrintScan MITOCARRIER 134 152
IPR002113 FPrintScan ADPTRNSLCASE 169 190
IPR002067 FPrintScan MITOCARRIER 191 209
IPR018108 ProfileScan SOLCAR 225 315
IPR018108 HMMPfam Mito_carr 226 316
IPR002067 FPrintScan MITOCARRIER 234 256
IPR002113 FPrintScan ADPTRNSLCASE 282 297
 
BlastP Searches (UniRef 100)
Accession %Sim Length Description P-value
UniRef100_B9F4D4 91.07 336 Putative uncharacterized protein n=1 Tax=Oryza sativa Japoni 6.7e-155
UniRef100_Q6H6J3 99.16 239 Putative mitochondrial solute carrier protein n=1 Tax=Oryza 8.3e-145
UniRef100_F2D6S1 87.23 329 Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. 3.6e-140
UniRef100_B4F8I5 85.21 338 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4F8 5.9e-140
UniRef100_F2DM21 86.93 329 Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. 3.2e-139
UniRef100_B8AEI5 100 260 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica 2.1e-135
UniRef100_C5XYH0 85.37 294 Putative uncharacterized protein Sb04g008020 n=1 Tax=Sorghum 2.9e-122
UniRef100_UPI0001984208 81.47 340 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID 1.3e-119
UniRef100_B9RKA8 82.81 320 Grave disease carrier protein, putative n=1 Tax=Ricinus comm 1.4e-115
UniRef100_B9H978 80.94 320 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9H978_P 4.7e-115
UniRef100_D7TBA1 85.05 301 Whole genome shotgun sequence of line PN40024, scaffold_16.a 8.8e-114
UniRef100_A5C1E5 84.17 259 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepI 8.6e-109
UniRef100_D7MFC1 82.15 297 Mitochondrial substrate carrier family protein n=1 Tax=Arabi 2e-107
UniRef100_Q9SZI9 82.15 297 Mitochondrial substrate carrier family protein n=1 Tax=Arabi 5.3e-107
UniRef100_C0HHG4 84.98 253 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C0HH 2.1e-105
UniRef100_A9TXB2 74.11 309 Predicted protein n=1 Tax=Physcomitrella patens subsp. paten 1.7e-92
UniRef100_B9HDD0 75.33 304 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HDD0_P 4.6e-92
UniRef100_A5BXD4 72.22 306 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepI 5.5e-89
UniRef100_D7STP5 72.22 306 Whole genome shotgun sequence of line PN40024, scaffold_8.as 1.5e-88
UniRef100_UPI0001982E30 72.22 306 PREDICTED: hypothetical protein isoform 3 n=1 Tax=Vitis vini 1.5e-88
 
Rice Syntelogs
Syntelog ID Rice Cultivar
OsARC_02g0009240 circum-Basmati var. ARC 10497
OsAzu_02g0009470 Geng/Japonica-trop1 var. Azucena
OsCMeo_02g0009420 Geng/Japonica-sbtrp var. Chao Meo
OsGoSa_02g0009590 Xian/Indica-2A var. Gobol Sail
OsIR64_02g0009200 Xian/Indica-1B1 var. IR64
OsKeNa_02g0009560 Geng/Japonica-trop2 var. Ketan Nangka
OsKitaake02g096200 Japonica var. Kitaake
OsKYG_02g0009280 Xian/Indica-3B1 var. Khao Yai Guang
OsLaMu_02g0009330 Xian/Indica-2B var. Larha Mugad
OsLima_02g0009640 Xian/Indica-3A var. Lima
OsLiXu_02g0009600 Xian/Indica-3B2 var. Liu Xu
OsMH63_02G009600_01 Xian/Indica-adm var. Minghui 63
OsN22_02G009540_01 circum-Aus1 var. N22
OsNaBo_02g0009360 circum-Aus2 var. Natel Boro
OsPr106_02g0009390 Xian/Indica-1B2 var. PR106
OsZS97_02G009200_01 Xian/Indica-1A var. Zhenshan 97
 
Poaceae Syntelogs
Syntelog ID Species
Bradi3g08557.2 Brachypodium
Sobic.004G097400.1 Sorghum
Seita.1G030900.1 Foxtail_millet
Zm00001eb239690_T003 Maize
 
RNA-Seq TPM Expression Values
SRA Run Sample TPM
SRR10991573 Seedling-Control-Rep1 15.252
SRR10991574 Seedling-Control-Rep2 15.9821
SRR10991575 Seedling-Control-Rep3 15.8869
SRR10991576 Seedling-Heat Stress-Rep1 9.15436
SRR10991577 Seedling-Heat Stress-Rep2 9.83356
SRR10991578 Seedling-Heat Stress-Rep3 9.77048
SRR11784188 Anther 5.47611
SRR11784189 Glume 7.91536
SRR1618546 Anthers 6.78147
SRR1618547 Pistils 4.49166
SRR1618548 Seeds-5DAP 8.04921
SRR16526863 Panicles, young-Rep1 13.8184
SRR16526864 Leaf-flag-rep3 11.1699
SRR16526865 Leaf-flag-rep2 13.4499
SRR16526866 Leaf-flag-rep1 16.4151
SRR16526871 Panicles, young-Rep3 12.1242
SRR16526872 Panicles, young-Rep2 10.6803
SRR17151219 Endosperm 7.74624
SRR18827797 Leaf-seedling, Control-24 hr-Rep3 12.7436
SRR18827798 Leaf-seedling, Cold Stress-24 hr-Rep2 170.939
SRR18827799 Leaf-seedling, Cold Stress-24 hr-Rep1 268.303
SRR18827800 Leaf-seedling, Cold Stress-24 hr-Rep3 187.679
SRR18827805 Leaf-seedling, Control-24 hr-Rep1 10.0889
SRR18827806 Leaf-seedling, Control-24 hr-Rep2 13.5015
SRR19614426 Seed-22 DAP-Rep3 3.50311
SRR19614427 Seed-22 DAP-Rep2 4.03823
SRR19614428 Seed-22 DAP-Rep1 4.09383
SRR25884981 Seedling-Cold-Rep1 12.0222
SRR25884988 Seedling-Control-Rep3 5.35134
SRR25884995 Seedling-Cold-Rep3 10.826
SRR25884996 Seedling-Cold-Rep2 12.5641
SRR25884997 Seedling-Control-Rep2 5.59546
SRR25884998 Seedling-Control-Rep1 5.54456
SRR26772159 Seedling-Salt stress-0 hr-Rep1 15.5145
SRR26772167 Seedling-Salt stress-24 hr-Rep3 91.1795
SRR26772168 Seedling-Salt stress-24 hr-Rep2 121.594
SRR26772169 Seedling-Salt stress-24 hr-Rep1 91.8362
SRR26772170 Seedling-Salt stress-12 hr-Rep3 71.7161
SRR26772171 Seedling-Salt stress-12 hr-Rep2 67.1
SRR26772172 Seedling-Salt stress-12 hr-Rep1 109.68
SRR26772173 Seedling-Salt stress-0 hr-Rep3 13.7288
SRR26772174 Seedling-Salt stress-0 hr-Rep2 18.4643
SRR7059295 Mature seed-Hypoxia-Rep2 9.45546
SRR7059296 Mature seed-Hypoxia-Rep3 8.39228
SRR7059297 Mature seed-Control-Rep1 13.6778
SRR7059298 Mature seed-Control-Rep2 12.5931
SRR7059299 Mature seed-Control-Rep3 11.7006
SRR7059300 Mature seed-Hypoxia-Rep1 8.3481
SRR7974059 Seed-Rep2 12.9085
SRR7974062 Seed-Rep1 11.7207
SRR8051546 Infloresence-Rep3 10.8344
SRR8051547 Infloresence-Rep2 17.0633
SRR8051548 Seedling-Rep2 7.96516
SRR8051549 Seedling-Rep1 8.44509
SRR8051550 Infloresence-Rep1 11.3663
SRR8051551 Seedling-Rep3 7.08368
SRR8051552 Stem-Rep3 9.01279
SRR8051553 Stem-Rep2 12.3482
SRR8051554 Stem-Rep1 12.1957
SRR8051555 Leaf-Rep3 5.88864
SRR8051556 Leaf-Rep2 6.74327
SRR8051557 Leaf-Rep1 6.90438
SRR8051558 Root-Rep3 31.8079
SRR8051559 Root-Rep2 33.1094
SRR8051560 Root-Rep1 34.6944
SRR8051561 Seed-Rep3 12.4357
SRR8490271 Seedlings-Control-Rep3 27.4032
SRR8490274 Seedlings-Drought-Rep2 91.0917
SRR8490275 Seedlings-Drought-Rep1 50.0025
SRR8490276 Seedlings-Control-Rep2 44.5613
SRR8490277 Seedlings-Control-Rep1 32.2312
SRR8490281 Seedlings-Drought-Rep3 82.5977
SRR9002107 Embryo-Rep1 17.2329
SRR9002108 Embryo-Rep2 9.17204
SRR9106180 Germinating Seed-0h Imbibation-Rep1 6.45337
SRR9106181 Germinating Seed-0h Imbibation-Rep2 6.35147
SRR9106182 Germinating Seed-0h Imbibation-Rep3 7.21716
SRR9117218 Germinating Seed-8h Imbibition-Rep1 7.71464
SRR9117219 Germinating Seed-8h Imbibition-Rep3 8.18867
SRR9117220 Germinating Seed-8h Imbibition-Rep2 6.09499

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.