The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.
umbbd.rule
Local identifiers in EAWAG Biocatalysis/Biodegradation Database should match this
regular expression:
^bt\d+$
Compact URIs (CURIEs) constructed from EAWAG Biocatalysis/Biodegradation Database should match
this regular expression:
^umbbd\.rule:bt\d+$
A summary of the relations in the Bioregistry schema can be found here.
bfo:0000050
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
UMBBD.RULE
|
|
GO | go |
UM-BBD_ruleID
|
|
Identifiers.org | miriam |
umbbd.rule
|
|
N2T | n2t |
umbbd.rule
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
umbbd.rule:bt0001
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.