Registry EAWAG Biocatalysis/Biodegradation Database

The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.

Prefix
umbbd.rule
Alternative Prefixes
UM-BBD_ruleID
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in EAWAG Biocatalysis/Biodegradation Database should match this regular expression:
^bt\d+$

Example Local Unique Identifier
bt0001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from EAWAG Biocatalysis/Biodegradation Database should match this regular expression:
^umbbd\.rule:bt\d+$

Example CURIE
umbbd.rule:bt0001
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )
umbbd (not directly registered)
Metaregistry EAWAG Biocatalysis/Biodegradation Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext UMBBD.RULE
GO Gene Ontology Registry logo go UM-BBD_ruleID
Identifiers.org Identifiers.org logo miriam umbbd.rule
N2T Name-to-Thing logo n2t umbbd.rule
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE umbbd.rule:bt0001 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
EAWAG Biocatalysis/Biodegradation Database umbbd.rule http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=bt0001
Bioregistry bioregistry https://bioregistry.io/umbbd.rule:bt0001
Identifiers.org miriam https://identifiers.org/umbbd.rule:bt0001
Name-to-Thing n2t https://n2t.net/umbbd.rule:bt0001