The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source.
- Prefix
smc.bgc- Links
- Homepage Request Discussion
- Publications
- 2024 The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Secondary Metabolism Collaboratory - biosynthetic gene cluster should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 12039302 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Secondary Metabolism Collaboratory - biosynthetic gene cluster should match this regular expression:
^smc\.bgc:\d+$ - Example CURIE
- smc.bgc:12039302
Contacts
- Contact
-
Daniel W Udwary
0000-0002-3491-0198
- Contributors
-
submitter
Mufaddal Naguthanawala
0009-0009-5240-7463
nagutm
- Reviewer
-
Benjamin M. Gyori
0000-0001-9439-5346
bgyori
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 12039302 is used to demonstrate the providers
available for Secondary Metabolism Collaboratory - biosynthetic gene cluster. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Secondary Metabolism Collaboratory - biosynthetic gene cluster | smc.bgc |
https://smc.jgi.doe.gov/bgc/12039302 |
| Bioregistry | bioregistry |
https://bioregistry.io/smc.bgc:12039302 |