Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.

Prefix
rapdb.locus
Alternative Prefixes
irgsp
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in RAP-DB Locus should match this regular expression:
^Os\S+g\d{7}$

Example Local Unique Identifier
Os01g0883800   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from RAP-DB Locus should match this regular expression:
^rapdb\.locus:Os\S+g\d{7}$

Example CURIE
rapdb.locus:Os01g0883800
Metaregistry RAP-DB Locus

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for rapdb.locus.

Registry Name Metaprefix External Prefix
Identifiers.org Identifiers.org logo miriam rapdb.locus
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE rapdb.locus: is used to demonstrate the provides available for rapdb.locus. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
RAP-DB Locus rapdb.locus https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=Os01g0883800
Bioregistry bioregistry https://bioregistry.io/rapdb.locus:Os01g0883800
Identifiers.org miriam https://identifiers.org/rapdb.locus:Os01g0883800