Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.

Prefix

phytozome.locus

Alternative Prefixes

JGI Phytozome

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Plant Genome Network should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier

Glyma0021s00410   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Genome Network should match this regular expression:
^phytozome.locus:[A-Za-z0-9]+$

Example CURIE

phytozome.locus:Glyma0021s00410

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for phytozome.locus.

Providers are various services that resolve CURIEs to URLs. The example CURIE phytozome.locus:Glyma0021s00410 is used to demonstrate the provides available for phytozome.locus. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.