Registry NIF Standard Ontology: Subcellular Entities

Suggest

NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).

Prefix: nlx.sub
Alternative Prefixes: NLXSUB nif_subcellular
Keywords: cellular components
License: CC BY-4.0
Links: Homepage Repository

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in NIF Standard Ontology: Subcellular Entities should match this regular expression:
^\d+$
Example Local Unique Identifier: 090803 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from NIF Standard Ontology: Subcellular Entities should match this regular expression:
^nlx\.sub:\d+$
Example CURIE: nlx.sub:090803

Contacts

Contact: Tom Gillespie 0000-0002-7509-4801 tgbugs
Contributors: submitter Tom Gillespie 0000-0002-7509-4801 tgbugs
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 ): neurolex

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 1 mapping to an external registry.

Registry Name	Registry Metaprefix	External Prefix	Curate
GO	`go`	`NIF_Subcellular`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 090803 is used to demonstrate the providers available for NIF Standard Ontology: Subcellular Entities. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
NIF Standard Ontology: Subcellular Entities	`nlx.sub`	http://uri.neuinfo.org/nif/nifstd/nlx_subcell_090803
Bioregistry	`bioregistry`	https://bioregistry.io/nlx.sub:090803

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("NLXSUB")
'nlx.sub'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("nlx.sub")
{'NLXSUB', 'nif_subcellular'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("nlx.sub")
'NIF Standard Ontology: Subcellular Entities'

Get the license:

>>> import bioregistry as br
>>> br.get_license("nlx.sub")
'CC BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("nlx.sub")
'https://github.com/SciCrunch/NIF-Ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("nlx.sub")
'https://github.com/SciCrunch/NIF-Ontology'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("nlx.sub")
'Tom Gillespie'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("nlx.sub")
'tgbugs@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("nlx.sub")
'tgbugs'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("nlx.sub")
'0000-0002-7509-4801'