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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF00004 - AAA)
ATPase family associated with various cellular activities (AAA)
(
Pfam
reference: accession no.
PF00004
)
(
Interpro
reference: accession no.
IPR003959
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
245 sequences @ 410 aa
(ave. pairwise identity: 0.27)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 139.73)
nucleotides
(available for above)
241 sequences @ 1230 bp
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 109.09)
amino acids, restricted set
(corresp. to available nt seqs)
241 sequences @ 410 aa
(ave. pairwise identity: 0.27)
New Hampshire format
(total tree length: 138.12)