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CDC25B cell division cycle 25B [ Homo sapiens (human) ]

Gene ID: 994, updated on 5-Mar-2024

Summary

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Official Symbol
CDC25Bprovided by HGNC
Official Full Name
cell division cycle 25Bprovided by HGNC
Primary source
HGNC:HGNC:1726
See related
Ensembl:ENSG00000101224 MIM:116949; AllianceGenome:HGNC:1726
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
CDC25B is a member of the CDC25 family of phosphatases. CDC25B activates the cyclin dependent kinase CDC2 by removing two phosphate groups and it is required for entry into mitosis. CDC25B shuttles between the nucleus and the cytoplasm due to nuclear localization and nuclear export signals. The protein is nuclear in the M and G1 phases of the cell cycle and moves to the cytoplasm during S and G2. CDC25B has oncogenic properties, although its role in tumor formation has not been determined. Multiple transcript variants for this gene exist. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in lymph node (RPKM 21.4), appendix (RPKM 15.3) and 24 other tissues See more
Orthologs
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Genomic context

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See CDC25B in Genome Data Viewer
Location:
20p13
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (3786951..3806115)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (3817891..3837037)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (3767598..3786762)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12627 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:3759113-3759730 Neighboring gene Sharpr-MPRA regulatory region 2213 Neighboring gene sperm flagellar 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:3766083-3766793 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:3766794-3767503 Neighboring gene centromere protein B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:3775953-3776684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12630 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:3777341-3777548 Neighboring gene Sharpr-MPRA regulatory region 3723 Neighboring gene Sharpr-MPRA regulatory region 8683 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:3782484-3783683 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:3787799-3788390 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:3788391-3788981 Neighboring gene long intergenic non-protein coding RNA 1730 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:3791796-3792995 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12631 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:3800994-3801697 Neighboring gene adaptor related protein complex 5 subunit sigma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Aβ monomers protect lens epithelial cells against oxidative stress by upregulating CDC25B. Xu J, et al. Free Radic Biol Med, 2021 Nov 1. PMID 34478836
  2. CDC25B is associated with the risk of hepatocellular carcinoma, but not related to persistent infection of hepatitis B virus in a Chinese population. Wang P, et al. Mol Biol Rep, 2020 May. PMID 32248384
  3. CDC25B promotes influenza A virus replication by regulating the phosphorylation of nucleoprotein. Cui L, et al. Virology, 2018 Dec. PMID 30240957
  4. Conformational flexibility of the complete catalytic domain of Cdc25B phosphatases. Sayegh RS, et al. Proteins, 2016 Nov. PMID 27410025
  5. Solution NMR studies reveal no global flexibility in the catalytic domain of CDC25B. Lund G, et al. Proteins, 2014 Nov. PMID 24740794, Free PMC Article

See all (152) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Transcription factor E2F3 activates CDC25B to regulate DNA damage and promote mitoxantrone resistance in stomach adenocarcinoma.
    Title: Transcription factor E2F3 activates CDC25B to regulate DNA damage and promote mitoxantrone resistance in stomach adenocarcinoma.
  2. Exploring the mechanism of C473D mutation on CDC25B causing weak binding affinity with CDK2/CyclinA by molecular dynamics study.
    Title: Exploring the mechanism of C473D mutation on CDC25B causing weak binding affinity with CDK2/CyclinA by molecular dynamics study.
  3. Abeta monomers protect lens epithelial cells against oxidative stress by upregulating CDC25B.
    Title: Aβ monomers protect lens epithelial cells against oxidative stress by upregulating CDC25B.
  4. CDC25B induces cellular senescence and correlates with tumor suppression in a p53-dependent manner.
    Title: CDC25B induces cellular senescence and correlates with tumor suppression in a p53-dependent manner.
  5. Knockdown of MAPK14 inhibits the proliferation and migration of clear cell renal cell carcinoma by downregulating the expression of CDC25B.
    Title: Knockdown of MAPK14 inhibits the proliferation and migration of clear cell renal cell carcinoma by downregulating the expression of CDC25B.
  6. CDC25B is associated with the risk of hepatocellular carcinoma, but not related to persistent infection of hepatitis B virus in a Chinese population.
    Title: CDC25B is associated with the risk of hepatocellular carcinoma, but not related to persistent infection of hepatitis B virus in a Chinese population.
  7. Pharmacophore-guided discovery of CDC25 inhibitors causing cell cycle arrest and tumor regression.
    Title: Pharmacophore-guided discovery of CDC25 inhibitors causing cell cycle arrest and tumor regression.
  8. Increased expression of CDC25B or CDC25C are mechanisms by which skin cancers evade apoptotic cell death.
    Title: CDC25B and CDC25C overexpression in nonmelanoma skin cancer suppresses cell death.
  9. Depletion of TIAR accelerates mitotic entry and leads to chromosomal instability in response to replication stress, in a manner that can be alleviated by the concomitant depletion of Cdc25B or inhibition of CDK1. Since TIAR retains CDK1 in GMGs and attenuates CDK1 activity, we propose that the assembly of GMGs may represent a so far unrecognized mechanism that contributes to the activation of the G2/M checkpoint
    Title: TIAR marks nuclear G2/M transition granules and restricts CDK1 activity under replication stress.
  10. These findings indicate that CDC25B facilitates the dephosphorylation of nucleoprotein (NP), which is vital for regulating NP functions and the life cycle of influenza a virus.
    Title: CDC25B promotes influenza A virus replication by regulating the phosphorylation of nucleoprotein.
Submit: New GeneRIF Correction See all GeneRIFs (74)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
EBI GWAS Catalog
Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Vpr vpr Kinase Srk1 is required for the Vpr-mediated nuclear export of Cdc25 PubMed
vpr HIV-1 Vpr induces subcellular relocalization of Cdc25 from nuclear to cytoplasm and Vpr-induced nuclear exclusion of Cdc25 depends on the serine/threonine phosphorylation of Cdc25 and the presence of Rad24/14-3-3 protein PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables phosphoprotein phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphoprotein phosphatase activity TAS
Traceable Author Statement
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein tyrosine phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein tyrosine phosphatase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in G2/M transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in G2/M transition of mitotic cell cycle TAS
Traceable Author Statement
more info
 PubMed 
involved_in cell division IEA
Inferred from Electronic Annotation
more info
  
involved_in female meiosis I IEA
Inferred from Electronic Annotation
more info
  
involved_in mitotic cell cycle TAS
Traceable Author Statement
more info
 PubMed 
involved_in oocyte maturation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of G2/M transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of G2/M transition of mitotic cell cycle IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of G2/MI transition of meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cell population proliferation TAS
Traceable Author Statement
more info
 PubMed 
involved_in positive regulation of cytokinesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in spindle pole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
M-phase inducer phosphatase 2
Names
CDC25 homolog B
dual specificity phosphatase Cdc25B
NP_001274445.1
NP_001274446.1
NP_001274447.1
NP_001274448.1
NP_001274449.1
NP_001274451.1
NP_001274453.1
NP_004349.1
NP_068658.1
NP_068659.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029040.2 RefSeqGene

    Range
    14539..24344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001287516.2 → NP_001274445.1  M-phase inducer phosphatase 2 isoform 4

    See identical proteins and their annotated locations for NP_001274445.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and initiates translation at an upstream start codon, compared to variant 1. The resulting protein (isoform 4) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AK295573, AL109804, DA107932, DB477384
    Consensus CDS
    CCDS74700.1
    UniProtKB/TrEMBL
    B4DIG0, B4DQZ3, E9PCK4
    Related
    ENSP00000339125.6, ENST00000344256.10
    Conserved Domains (2) summary
    cd01530
    Location:348 → 467
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:49 → 319
    M-inducer_phosp; M-phase inducer phosphatase

  2. NM_001287517.2 → NP_001274446.1  M-phase inducer phosphatase 2 isoform 5

    See identical proteins and their annotated locations for NP_001274446.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR which results in initiation of translation at an upstream start codon, and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The resulting protein (isoform 5) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AK299192, AL109804, DA107932, DB477384
    UniProtKB/TrEMBL
    B4DQZ3, B4DRC3
    Conserved Domains (2) summary
    cd01530
    Location:334 → 453
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:35 → 305
    M-inducer_phosp; M-phase inducer phosphatase

  3. NM_001287518.2 → NP_001274447.1  M-phase inducer phosphatase 2 isoform 6

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, initiates translation at an upstream start codon, and lacks an in-frame exon in the 3' coding region, compared to variant 1. The resulting protein (isoform 6) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AK299028, AL109804, DA107932, DB477384
    Consensus CDS
    CCDS74701.1
    UniProtKB/TrEMBL
    B4DQZ3, G8JLH2
    Related
    ENSP00000368918.5, ENST00000379598.9
    Conserved Domains (2) summary
    cd01530
    Location:321 → 440
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:49 → 292
    M-inducer_phosp; M-phase inducer phosphatase

  4. NM_001287519.2 → NP_001274448.1  M-phase inducer phosphatase 2 isoform 7

    See identical proteins and their annotated locations for NP_001274448.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) uses an alternate splice site in the 5' UTR which results in initiation of translation at a downstream start codon, compared to variant 1. The encoded protein (isoform 7) has a shorter N-terminus compared to isoform 1. Variants 7 and 8 encode the same isoform.
    Source sequence(s)
    AL561439, BC051711, BM793120, BX647988
    UniProtKB/TrEMBL
    B3KS38, Q6MZW8
    Conserved Domains (2) summary
    cd01530
    Location:300 → 419
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:1 → 271
    M-inducer_phosp; M-phase inducer phosphatase

  5. NM_001287520.2 → NP_001274449.1  M-phase inducer phosphatase 2 isoform 7

    See identical proteins and their annotated locations for NP_001274449.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8), also known as CDC25B6, uses an alternate splice site in the 5' UTR which results in initiation of translation at a downstream start codon, compared to variant 1. The encoded protein (isoform 7) has a shorter N-terminus compared to isoform 1. Variants 7 and 8 encode the same isoform.
    Source sequence(s)
    DA107932, FR695900
    UniProtKB/TrEMBL
    B3KS38, Q6MZW8
    Conserved Domains (2) summary
    cd01530
    Location:300 → 419
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:1 → 271
    M-inducer_phosp; M-phase inducer phosphatase

  6. NM_001287522.2 → NP_001274451.1  M-phase inducer phosphatase 2 isoform 8

    See identical proteins and their annotated locations for NP_001274451.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) uses an alternate splice site in the 5' UTR which results in initiation of translation at a downstream start codon, compared to variant 1. The encoded protein (isoform 8) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AL561439, FR695901
    UniProtKB/TrEMBL
    E1YMX4, Q6MZW8
    Conserved Domains (2) summary
    cd01530
    Location:259 → 378
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:1 → 230
    M-inducer_phosp; M-phase inducer phosphatase

  7. NM_001287524.2 → NP_001274453.1  M-phase inducer phosphatase 2 isoform 9

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) differs in the 5' UTR and has multiple coding region differences, compared to variant 1, which causes translation initiation at a downstream start codon. The resulting protein (isoform 9) has a shorter N-terminus and lacks an internal region compared to isoform 1.
    Source sequence(s)
    AL109804, BC051711, BX640836, DA065196, DA107932
    UniProtKB/TrEMBL
    Q6MZW8
    Conserved Domains (2) summary
    cd01530
    Location:220 → 339
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:1 → 191
    M-inducer_phosp; M-phase inducer phosphatase

  8. NM_004358.5 → NP_004349.1  M-phase inducer phosphatase 2 isoform 2

    See identical proteins and their annotated locations for NP_004349.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2), also known as CDC25B1, uses an alternate splice site in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 2) compared to isoform 1.
    Source sequence(s)
    BC051711, BX640836, S78187
    Consensus CDS
    CCDS13065.1
    UniProtKB/TrEMBL
    B4DQZ3
    Related
    ENSP00000405972.2, ENST00000439880.6
    Conserved Domains (2) summary
    cd01530
    Location:398 → 517
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:99 → 369
    M-inducer_phosp; M-phase inducer phosphatase

  9. NM_021872.4 → NP_068658.1  M-phase inducer phosphatase 2 isoform 3

    See identical proteins and their annotated locations for NP_068658.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3), also known as CDC25B2, lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 3) compared to isoform 1.
    Source sequence(s)
    BC051711, BX640836, S78187, Z68092
    Consensus CDS
    CCDS13066.1
    UniProtKB/TrEMBL
    B4DQZ3
    Related
    ENSP00000339170.4, ENST00000340833.4
    Conserved Domains (2) summary
    cd01530
    Location:371 → 490
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:113 → 342
    M-inducer_phosp; M-phase inducer phosphatase

  10. NM_021873.4 → NP_068659.1  M-phase inducer phosphatase 2 isoform 1

    See identical proteins and their annotated locations for NP_068659.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1), also known as CDC25B3, represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    BC051711, BX640836, S78187
    Consensus CDS
    CCDS13067.1
    UniProtKB/Swiss-Prot
    D3DVY1, D3DVY2, D3DVY3, D3DVY4, O43551, P30305, Q13971, Q5JX77, Q6RSS1, Q9BRA6
    UniProtKB/TrEMBL
    B4DQZ3
    Related
    ENSP00000245960.5, ENST00000245960.10
    Conserved Domains (2) summary
    cd01530
    Location:412 → 531
    Cdc25; Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to ...
    pfam06617
    Location:113 → 383
    M-inducer_phosp; M-phase inducer phosphatase

RNA

  1. NR_136335.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL109804, DA107932

  2. NR_136336.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL109804, DA107932, DB477384

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    3786951..3806115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    3817891..3837037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_021874.2: Suppressed sequence

    Description
    NM_021874.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NM_212530.1: Suppressed sequence

    Description
    NM_212530.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P30305.2 GenPept UniProtKB/Swiss-Prot:P30305

Gene LinkOut

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