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Sfrp1 secreted frizzled-related protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 84402, updated on 13-Apr-2024

Summary

Official Symbol
Sfrp1provided by RGD
Official Full Name
secreted frizzled-related protein 1provided by RGD
Primary source
RGD:621074
See related
Ensembl:ENSRNOG00000017783 AllianceGenome:RGD:621074
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
sFRP-1
Summary
Predicted to enable several functions, including Wnt-protein binding activity; frizzled binding activity; and heparin binding activity. Involved in several processes, including cellular response to prostaglandin E stimulus; negative regulation of osteoclast differentiation; and osteoblast differentiation. Predicted to be located in cell surface; collagen-containing extracellular matrix; and cytosol. Predicted to be active in extracellular space. Orthologous to human SFRP1 (secreted frizzled related protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 136.3), Spleen (RPKM 109.3) and 9 other tissues See more
Orthologs
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Genomic context

See Sfrp1 in Genome Data Viewer
Location:
16q12.5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (75278325..75316736, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (68575763..68614180, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (73372007..73410777, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482412 Neighboring gene uncharacterized LOC120097520 Neighboring gene uncharacterized LOC134482411 Neighboring gene U4 spliceosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein A1, pseudogene 35

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 
enables Wnt-protein binding ISO
Inferred from Sequence Orthology
more info
 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables cysteine-type endopeptidase activity ISO
Inferred from Sequence Orthology
more info
 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 
enables frizzled binding ISO
Inferred from Sequence Orthology
more info
 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 
enables heparin binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of BMP signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in Wnt signaling pathway involved in somitogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within Wnt signaling pathway involved in somitogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within Wnt signaling pathway, planar cell polarity pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within anterior/posterior pattern specification ISO
Inferred from Sequence Orthology
more info
 
involved_in bone trabecula formation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within bone trabecula formation ISO
Inferred from Sequence Orthology
more info
 
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to BMP stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to X-ray IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to X-ray ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to estradiol stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to estradiol stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to estrogen stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to estrogen stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to fibroblast growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to fibroblast growth factor stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to growth factor stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to heparin IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to heparin ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to hypoxia IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to hypoxia ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to interleukin-1 IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to interleukin-1 ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to prostaglandin E stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to prostaglandin E stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to prostaglandin E stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to starvation ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to transforming growth factor beta stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to transforming growth factor beta stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to tumor necrosis factor IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to tumor necrosis factor ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to vitamin D IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to vitamin D ISO
Inferred from Sequence Orthology
more info
 
involved_in convergent extension involved in somitogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within convergent extension involved in somitogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within development of primary male sexual characteristics ISO
Inferred from Sequence Orthology
more info
 
involved_in digestive tract morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within digestive tract morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in dopaminergic neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in dopaminergic neuron differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in dorsal/ventral axis specification IEA
Inferred from Electronic Annotation
more info
 
involved_in dorsal/ventral axis specification ISO
Inferred from Sequence Orthology
more info
 
involved_in extrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of extrinsic apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in female gonad development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within female gonad development ISO
Inferred from Sequence Orthology
more info
 
involved_in hematopoietic progenitor cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in hematopoietic stem cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in hematopoietic stem cell differentiation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within hemopoiesis ISO
Inferred from Sequence Orthology
more info
 
involved_in male gonad development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within male gonad development ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of B cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of B cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of BMP signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of Wnt signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of Wnt signaling pathway TAS
Traceable Author Statement
more info
PubMed 
involved_in negative regulation of androgen receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of androgen receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of bone remodeling IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of bone remodeling ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of canonical Wnt signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell growth IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of epithelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of epithelial to mesenchymal transition IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of fibroblast apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of fibroblast apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of fibroblast proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of fibroblast proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of insulin secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of ossification IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of ossification ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of ossification ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of osteoblast proliferation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of osteoblast proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of osteoblast proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of osteoclast differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of osteoclast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of peptidyl-tyrosine phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of planar cell polarity pathway involved in axis elongation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of planar cell polarity pathway involved in axis elongation ISO
Inferred from Sequence Orthology
more info
 
involved_in neural crest cell fate commitment IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within neural crest cell fate commitment ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within neural tube closure ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within neural tube development ISO
Inferred from Sequence Orthology
more info
 
involved_in osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in osteoblast differentiation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of osteoclast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in planar cell polarity pathway involved in axis elongation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of planar cell polarity pathway involved in axis elongation ISO
Inferred from Sequence Orthology
more info
 
involved_in planar cell polarity pathway involved in neural tube closure IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within planar cell polarity pathway involved in neural tube closure ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell growth IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of extrinsic apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of extrinsic apoptotic signaling pathway via death domain receptors ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fat cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of fat cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fat cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fibroblast apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of fibroblast apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of non-canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of smoothened signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of branching involved in prostate gland morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of branching involved in prostate gland morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell cycle process IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cell cycle process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of establishment of planar polarity ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of midbrain dopaminergic neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of midbrain dopaminergic neuron differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of ossification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to organic cyclic compound ISO
Inferred from Sequence Orthology
more info
 
involved_in response to xenobiotic stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in response to xenobiotic stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in somatic stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within somatic stem cell population maintenance ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within somitogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in somitogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in stromal-epithelial cell signaling involved in prostate gland development IEA
Inferred from Electronic Annotation
more info
 
involved_in stromal-epithelial cell signaling involved in prostate gland development ISO
Inferred from Sequence Orthology
more info
 
involved_in ureteric bud development IEA
Inferred from Electronic Annotation
more info
 
involved_in ureteric bud development ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
located_in collagen-containing extracellular matrix ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
secreted frizzled-related protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001276712.2NP_001263641.2  secreted frizzled-related protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A6IW39, F1LLX7
    Related
    ENSRNOP00000024128.5, ENSRNOT00000024128.7
    Conserved Domains (2) summary
    cd07443
    Location:52175
    CRD_SFRP1; Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity
    cd03580
    Location:183306
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    75278325..75316736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)