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Ppargc1a PPARG coactivator 1 alpha [ Rattus norvegicus (Norway rat) ]

Gene ID: 83516, updated on 11-Apr-2024

Summary

Official Symbol
Ppargc1aprovided by RGD
Official Full Name
PPARG coactivator 1 alphaprovided by RGD
Primary source
RGD:620925
See related
Ensembl:ENSRNOG00000004473 AllianceGenome:RGD:620925
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
PGCvf; LRPGC1; PGC-1v; PGCvf1; PGCvf-1; Ppargc1
Summary
Enables several functions, including alpha-tubulin binding activity; estrogen receptor binding activity; and peroxisome proliferator activated receptor binding activity. Involved in several processes, including cellular response to hexose stimulus; cellular response to organic cyclic compound; and regulation of smooth muscle cell proliferation. Located in several cellular components, including apical dendrite; cytosolic ribosome; and euchromatin. Used to study several diseases, including fatty liver disease (multiple); glucose metabolism disease (multiple); heart disease (multiple); neurodegenerative disease (multiple); and sciatic neuropathy. Biomarker of several diseases, including Huntington's disease; glucose metabolism disease (multiple); placental insufficiency; primary biliary cholangitis; and renal fibrosis. Human ortholog(s) of this gene implicated in several diseases, including macular degeneration; malignant fibrous histiocytoma; neurodegenerative disease (multiple); non-alcoholic fatty liver disease; and type 2 diabetes mellitus. Orthologous to human PPARGC1A (PPARG coactivator 1 alpha). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 186.0), Heart (RPKM 141.9) and 7 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

Location:
14q11
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (63073505..63729215)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (58860752..59516525)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (63095291..63190688)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352757 Neighboring gene ribosomal protein L36, pseudogene Neighboring gene DEAH-box helicase 15 Neighboring gene high mobility group nucleosome binding domain 1, pseudogene 6 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II-specific DNA-binding transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
enables alpha-tubulin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables chromatin DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables lncRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables lncRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nuclear estrogen receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables nuclear receptor coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor coactivator activity ISO
Inferred from Sequence Orthology
more info
 
enables peroxisome proliferator activated receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables promoter-specific chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription coregulator activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in adaptive thermogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in adipose tissue development IEA
Inferred from Electronic Annotation
more info
 
involved_in adipose tissue development ISO
Inferred from Sequence Orthology
more info
 
involved_in androgen metabolic process IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to caffeine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to estradiol stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to fatty acid IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to follicle-stimulating hormone stimulus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cellular response to fructose stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to glucose stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to interleukin-6 IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to ionomycin IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to lipopolysaccharide IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to nitrite IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to oxidative stress ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to oxidative stress ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cellular response to potassium ion IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to resveratrol IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to thyroid hormone stimulus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cellular response to thyroid hormone stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to transforming growth factor beta stimulus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cellular response to tumor necrosis factor IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cerebellum development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 
involved_in circadian regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in circadian regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of energy homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in energy homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in energy homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in fatty acid oxidation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in flavone metabolic process IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in forebrain development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in galactose metabolic process IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in gluconeogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in gluconeogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in gluconeogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 
involved_in mitochondrion organization IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mitochondrion organization ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of glycolytic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of mitochondrial fission IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of neuron apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of protein phosphorylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of smooth muscle cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of smooth muscle cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of negative regulation of smooth muscle cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cold-induced thermogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cold-induced thermogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cold-induced thermogenesis ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in positive regulation of fatty acid oxidation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of podocyte apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of progesterone biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of vascular associated smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of circadian rhythm IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of circadian rhythm ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in respiratory electron transport chain IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within respiratory electron transport chain ISO
Inferred from Sequence Orthology
more info
 
involved_in respiratory electron transport chain ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in response to L-leucine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to activity IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to dehydroepiandrosterone IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to dietary excess IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within response to dietary excess ISO
Inferred from Sequence Orthology
more info
 
involved_in response to electrical stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to electrical stimulus involved in regulation of muscle adaptation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to epinephrine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to fructose IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypobaric hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to ischemia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to methionine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to muscle activity IEA
Inferred from Electronic Annotation
more info
 
involved_in response to muscle activity IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within response to muscle activity ISO
Inferred from Sequence Orthology
more info
 
involved_in response to muscle activity ISO
Inferred from Sequence Orthology
more info
 
involved_in response to muscle activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in response to norepinephrine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to nutrient levels IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organic cyclic compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to reactive oxygen species IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to starvation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to thyroid hormone IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to xenobiotic stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in skeletal muscle atrophy IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 
located_in apical dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 
part_of euchromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Names
PGC-1-alpha
PGC-1alpha
PPAR gamma coactivator 1alpha variant form-1
PPAR-gamma coactivator 1-alpha
PPARGC-1-alpha
Ppargc1a-vf1
peroxisome proliferative activated receptor gamma coactivator 1
peroxisome proliferative activated receptor, gamma, coactivator 1 alpha

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031347.1NP_112637.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha

    See identical proteins and their annotated locations for NP_112637.1

    Status: PROVISIONAL

    Source sequence(s)
    AB025784
    UniProtKB/Swiss-Prot
    Q9QYK2
    UniProtKB/TrEMBL
    A0A8I5Y905, A6IJI5
    Related
    ENSRNOP00000076568.1, ENSRNOT00000105198.1
    Conserved Domains (1) summary
    cd12623
    Location:673763
    RRM_PPARGC1A; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    63073505..63729215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092491.2XP_038948419.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y905
    Conserved Domains (1) summary
    cd12623
    Location:695785
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
  2. XM_063273670.1XP_063129740.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X6

    UniProtKB/TrEMBL
    A0A8I6AWK0
  3. XM_039092490.2XP_038948418.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8I5Y905
    Conserved Domains (1) summary
    cd12623
    Location:701791
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
  4. XM_063273669.1XP_063129739.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X5

  5. XM_063273671.1XP_063129741.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X7

  6. XM_063273672.1XP_063129742.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X8

  7. XM_039092489.2XP_038948417.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y905
    Related
    ENSRNOP00000006071.4
    Conserved Domains (1) summary
    cd12623
    Location:705795
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
  8. XM_063273673.1XP_063129743.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X9

  9. XM_039092492.2XP_038948420.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8I5Y905
    Conserved Domains (1) summary
    cd12623
    Location:690780
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
  10. XM_063273674.1XP_063129744.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X9