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Vmn1r172 vomeronasal 1 receptor 172 [ Mus musculus (house mouse) ]

Gene ID: 81010, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r172provided by MGI
Official Full Name
vomeronasal 1 receptor 172provided by MGI
Primary source
MGI:MGI:3033478
See related
Ensembl:ENSMUSG00000035523 AllianceGenome:MGI:3033478
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V3R9; V1rd9
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Genomic context

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See Vmn1r172 in Genome Data Viewer
Location:
7 A3; 7 10.24 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (23357741..23360088)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (23658316..23660663)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 170 Neighboring gene vomeronasal 1 receptor 171 Neighboring gene STARR-seq mESC enhancer starr_18242 Neighboring gene vomeronasal 1 receptor 173 Neighboring gene vomeronasal 1 receptor 174

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel family of candidate pheromone receptors in mammals. Pantages E, et al. Neuron, 2000 Dec. PMID 11163270
  2. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  3. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  4. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vomeronasal 1 receptor 172
Names
pheromone receptor V3R9
vomeronasal 1 receptor Vmn1r172
vomeronasal 1 receptor, D9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362150.1 → NP_001349079.1  vomeronasal 1 receptor 172

    Status: VALIDATED

    Source sequence(s)
    AF324873, BC139317
    Consensus CDS
    CCDS20932.1
    UniProtKB/TrEMBL
    Q8R2B0, Q9EPS4
    Related
    ENSMUSP00000133887.2, ENSMUST00000173101.3
    Conserved Domains (2) summary
    cd14964
    Location:16 → 40
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:14 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  2. NM_030735.1 → NP_109660.1  vomeronasal 1 receptor 172

    See identical proteins and their annotated locations for NP_109660.1

    Status: VALIDATED

    Source sequence(s)
    AF324873
    Consensus CDS
    CCDS20932.1
    UniProtKB/TrEMBL
    Q8R2B0, Q9EPS4
    Related
    ENSMUSP00000041653.8, ENSMUST00000038694.9
    Conserved Domains (2) summary
    cd14964
    Location:16 → 40
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:14 → 292
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    23357741..23360088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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