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GTF2E2 general transcription factor IIE subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 771227, updated on 3-Apr-2024

Summary

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Symbol
GTF2E2provided by CGNC
Full Name
general transcription factor IIE subunit 2provided by CGNC
Primary source
CGNC:56614
See related
Ensembl:ENSGALG00010008056
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (34287694..34312093)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (34239759..34264155)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene purine rich element binding protein G Neighboring gene uncharacterized LOC121110748 Neighboring gene Werner syndrome RecQ like helicase Neighboring gene small integral membrane protein 18 Neighboring gene uncharacterized LOC121110749 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene microRNA 6591 Neighboring gene dynactin subunit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIE subunit beta
Names
general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012888.2 → NP_001012906.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for NP_001012906.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000073
    UniProtKB/TrEMBL
    A0A8V0XXN6, Q5ZIE1
    Related
    ENSGALP00010010767.1, ENSGALT00010019219.1
    Conserved Domains (2) summary
    cd07977
    Location:67 → 145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam18121
    Location:145 → 203
    TFA2_Winged_2; TFA2 Winged helix domain 2

  2. NM_001397358.1 → NP_001384287.1  transcription initiation factor IIE subunit beta

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000073
    UniProtKB/TrEMBL
    A0A8V0XXN6, Q5ZIE1
    Conserved Domains (2) summary
    cd07977
    Location:67 → 145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam18121
    Location:145 → 203
    TFA2_Winged_2; TFA2 Winged helix domain 2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    34287694..34312093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040699114.2 → XP_040555048.1  transcription initiation factor IIE subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXN6, Q5ZIE1
    Conserved Domains (2) summary
    cd07977
    Location:67 → 145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam18121
    Location:145 → 203
    TFA2_Winged_2; TFA2 Winged helix domain 2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    34239759..34264155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916573.1 → XP_046772529.1  transcription initiation factor IIE subunit beta isoform X1

    UniProtKB/TrEMBL
    Q5ZIE1
Nucleotide Protein Strain
Heading Accession and Version

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