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HIP1 huntingtin interacting protein 1 [ Gallus gallus (chicken) ]

Gene ID: 770683, updated on 5-Mar-2024

Summary

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Official Symbol
HIP1provided by CGNC
Official Full Name
huntingtin interacting protein 1provided by CGNC
Primary source
CGNC:618
See related
Ensembl:ENSGALG00010029547
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
34
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (853287..887985, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (583326..617986, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene NOP2/Sun RNA methyltransferase family member 5 Neighboring gene POM121 transmembrane nucleoporin C Neighboring gene chemokine-like ligand 4 Neighboring gene tripartite motif containing 58

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,4-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cortical patch IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    853287..887985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015295909.4 → XP_015151395.2  huntingtin-interacting protein 1 isoform X1

    Conserved Domains (4) summary
    smart00307
    Location:831 → 1001
    ILWEQ; I/LWEQ domain
    COG0610
    Location:235 → 492
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:395 → 662
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd17013
    Location:39 → 152
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  2. XM_015295912.4 → XP_015151398.2  huntingtin-interacting protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V1AKR3
    Related
    ENSGALP00010044109.1, ENSGALT00010071419.1
    Conserved Domains (4) summary
    smart00307
    Location:831 → 1029
    ILWEQ; I/LWEQ domain
    COG0610
    Location:235 → 492
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:395 → 662
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd17013
    Location:39 → 152
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  3. XM_046902540.1 → XP_046758496.1  huntingtin-interacting protein 1 isoform X7

  4. XM_015295911.4 → XP_015151397.2  huntingtin-interacting protein 1 isoform X4

    Conserved Domains (4) summary
    smart00307
    Location:798 → 968
    ILWEQ; I/LWEQ domain
    COG0610
    Location:202 → 459
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:362 → 629
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd17013
    Location:6 → 119
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  5. XM_040650346.2 → XP_040506280.1  huntingtin-interacting protein 1 isoform X6

    Conserved Domains (4) summary
    smart00307
    Location:798 → 996
    ILWEQ; I/LWEQ domain
    COG0610
    Location:217 → 459
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:362 → 629
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd17013
    Location:6 → 119
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  6. XM_040650345.2 → XP_040506279.1  huntingtin-interacting protein 1 isoform X3

    Conserved Domains (4) summary
    smart00307
    Location:799 → 969
    ILWEQ; I/LWEQ domain
    COG0610
    Location:203 → 460
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:363 → 630
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02544
    Location:8 → 120
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  7. XM_040650344.1 → XP_040506278.1  huntingtin-interacting protein 1 isoform X2

    Conserved Domains (4) summary
    smart00307
    Location:807 → 977
    ILWEQ; I/LWEQ domain
    COG0610
    Location:211 → 468
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    COG1196
    Location:371 → 638
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02544
    Location:15 → 128
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    583326..617986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687551.2 → XP_040543485.1  huntingtin-interacting protein 1 isoform X1

    Conserved Domains (3) summary
    smart00307
    Location:831 → 1001
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:365 → 655
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd17013
    Location:39 → 152
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  2. XM_040687556.2 → XP_040543490.1  huntingtin-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    smart00307
    Location:831 → 1029
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:365 → 655
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd17013
    Location:39 → 152
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  3. XM_046930533.1 → XP_046786489.1  huntingtin-interacting protein 1 isoform X7

  4. XM_040687554.2 → XP_040543488.1  huntingtin-interacting protein 1 isoform X4

    Conserved Domains (3) summary
    smart00307
    Location:798 → 968
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:332 → 622
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd17013
    Location:6 → 119
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  5. XM_040687557.2 → XP_040543491.1  huntingtin-interacting protein 1 isoform X6

    Conserved Domains (3) summary
    smart00307
    Location:798 → 996
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:332 → 622
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd17013
    Location:6 → 119
    ANTH_N_HIP1; ANTH (AP180 N-Terminal Homology) domain, N-terminal region, of Huntingtin-interacting protein 1

  6. XM_040687553.2 → XP_040543487.1  huntingtin-interacting protein 1 isoform X3

    Conserved Domains (3) summary
    smart00307
    Location:799 → 969
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:333 → 623
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cl02544
    Location:8 → 120
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  7. XM_040687552.1 → XP_040543486.1  huntingtin-interacting protein 1 isoform X2

    Conserved Domains (3) summary
    smart00307
    Location:807 → 977
    ILWEQ; I/LWEQ domain
    TIGR02169
    Location:341 → 631
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cl02544
    Location:15 → 128
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein Strain
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