zgc:153713 zgc:153713 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:153713provided by ZNC
Official Full Name: zgc:153713provided by ZNC
Primary source: ZFIN:ZDB-GENE-060825-41
See related: AllianceGenome:ZFIN:ZDB-GENE-060825-41
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within small GTPase mediated signal transduction. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 22

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003337172.1 (1597..1945)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003337172.1 (1597..1945)

NW_003337172.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fk85h09.x1 (e-PCR)
- UniSTS:201638

G40075 (e-PCR)
- UniSTS:14010

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables G protein activity	IEA Inferred from Electronic Annotation more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in skeletal muscle satellite cell migration	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within small GTPase-mediated signal transduction	IEA Inferred from Electronic Annotation more info
involved_in wound healing, spreading of cells	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: RhoA_like domain-containing protein

NP_001038815.1

EC 3.6.5.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045350.1 → NP_001038815.1 RhoA_like domain-containing protein

See identical proteins and their annotated locations for NP_001038815.1

Status: PROVISIONAL

Source sequence(s)

BC122391

UniProtKB/TrEMBL

Q0P3X9

Conserved Domains (2) summary

smart00174
Location:8 → 181

RHO; Rho (Ras homology) subfamily of Ras-like small GTPases

cd01870
Location:5 → 179

RhoA_like; Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC