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POLR1E RNA polymerase I subunit E [ Pan troglodytes (chimpanzee) ]

Gene ID: 747551, updated on 29-Mar-2024

Summary

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Official Symbol
POLR1Eprovided by VGNC
Official Full Name
RNA polymerase I subunit Eprovided by VGNC
Primary source
VGNC:VGNC:9189
Locus tag
CK820_G0014294
See related
Ensembl:ENSPTRG00000020944
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (78480837..78498335, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (40370383..40387881)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 5 Neighboring gene F-box protein 10 Neighboring gene BTB/POZ domain-containing protein KCTD9-like Neighboring gene zinc finger and BTB domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase I preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA49
Names
DNA-directed RNA polymerase I-associated factor 53 kDa subunit
RNA polymerase I associated factor 53
polymerase (RNA) I polypeptide E, 53kDa
polymerase (RNA) I subunit E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279994.1 → NP_001266923.1  DNA-directed RNA polymerase I subunit RPA49

    See identical proteins and their annotated locations for NP_001266923.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305002
    UniProtKB/TrEMBL
    A0A2J8QRL0, A0A6D2WDZ0, G2HE38, H2R1V9, K7A0K8
    Related
    ENSPTRP00000042972.4, ENSPTRT00000042273.4
    Conserved Domains (1) summary
    pfam06870
    Location:36 → 411
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    78480837..78498335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009456257.5 → XP_009454532.1  DNA-directed RNA polymerase I subunit RPA49 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SVI5, A0A2J8QRL0, A0A2J8QRL6, A0A6D2WDZ0, A0A6D2X5W6, H2R1V9, K7A0K8
    Related
    ENSPTRP00000081004.1
    Conserved Domains (1) summary
    pfam06870
    Location:94 → 469
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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