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PAX5 paired box 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 747452, updated on 3-Apr-2024

Summary

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Official Symbol
PAX5provided by VGNC
Official Full Name
paired box 5provided by VGNC
Primary source
VGNC:VGNC:13933
Locus tag
CK820_G0014311
See related
Ensembl:ENSPTRG00000020936
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (78953434..79156523)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (39714552..39914985, complement)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129135929 Neighboring gene large ribosomal subunit protein eL32-like Neighboring gene uncharacterized LOC134807669 Neighboring gene maternal embryonic leucine zipper kinase Neighboring gene ring finger protein 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-5
Names
paired box gene 5 (B-cell lineage specific activator)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    78953434..79156523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001169207.8 → XP_001169207.1  paired box protein Pax-5 isoform X1

    See identical proteins and their annotated locations for XP_001169207.1

    UniProtKB/TrEMBL
    A0A2J8QRL4, A0A2J8QRM6, A0A6D2W022, H2R6P1
    Related
    ENSPTRP00000049315.3
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_063787843.1 → XP_063643913.1  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3TKI5, A0A2J8QRK8, A0A6D2WFE0

  3. XM_063787844.1 → XP_063643914.1  paired box protein Pax-5 isoform X4

  4. XM_063787847.1 → XP_063643917.1  paired box protein Pax-5 isoform X6

  5. XM_009456631.5 → XP_009454906.1  paired box protein Pax-5 isoform X2

    See identical proteins and their annotated locations for XP_009454906.1

    UniProtKB/TrEMBL
    A0A2J8QRL4
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_063787845.1 → XP_063643915.1  paired box protein Pax-5 isoform X5

    UniProtKB/TrEMBL
    A0A2I3TCS8, A0A2J8QRK7, A0A6D2W036

  7. XM_016960889.4 → XP_016816378.1  paired box protein Pax-5 isoform X5

    UniProtKB/TrEMBL
    A0A2I3TCS8, A0A2J8QRK7, A0A6D2W036
    Related
    ENSPTRP00000087006.1
    Conserved Domains (2) summary
    pfam12403
    Location:171 → 281
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  8. XM_063787846.1 → XP_063643916.1  paired box protein Pax-5 isoform X6

Nucleotide Protein
Heading Accession and Version

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