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HMGA1 high mobility group AT-hook 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 746594, updated on 3-Apr-2024

Summary

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Official Symbol
HMGA1provided by VGNC
Official Full Name
high mobility group AT-hook 1provided by VGNC
Primary source
VGNC:VGNC:3119
Locus tag
CK820_G0007023
See related
Ensembl:ENSPTRG00000040884
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (40114520..40123943)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (40114533..40123949)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 4 Neighboring gene keratin, type I cytoskeletal 18-like Neighboring gene large ribosomal subunit protein uL29-like Neighboring gene small integral membrane protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein HMG-I/HMG-Y

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246496.1 → NP_001233425.1  high mobility group protein HMG-I/HMG-Y

    See identical proteins and their annotated locations for NP_001233425.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306394
    UniProtKB/TrEMBL
    A0A2I3SIC2, A0A2J8NYR8, A0A6D2W5C9, G2HI30
    Related
    ENSPTRP00000059798.1, ENSPTRT00000076350.2

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    40114520..40123943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009451064.3 → XP_009449339.1  high mobility group protein HMG-I/HMG-Y isoform X2

    See identical proteins and their annotated locations for XP_009449339.1

    UniProtKB/TrEMBL
    A0A2I3SU50, A0A2J8NYT3, A0A6D2X154, G2HF61

  2. XM_009451063.4 → XP_009449338.1  high mobility group protein HMG-I/HMG-Y isoform X1

    See identical proteins and their annotated locations for XP_009449338.1

    UniProtKB/TrEMBL
    A0A2I3SIC2, A0A2J8NYR8, A0A6D2W5C9, G2HI30

  3. XM_063812033.1 → XP_063668103.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    A0A2J8NYT3, A0A6D2X154, G2HF61

  4. XM_054685548.1 → XP_054541523.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    A0A2J8NYR8, A0A6D2W5C9, G2HI30

  5. XM_054685547.2 → XP_054541522.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    A0A2J8NYT3, A0A6D2X154, G2HF61

  6. XM_063812035.1 → XP_063668105.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    A0A2J8NYT3, A0A6D2X154, G2HF61

  7. XM_054685546.2 → XP_054541521.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    A0A2J8NYR8, A0A6D2W5C9, G2HI30
Nucleotide Protein
Heading Accession and Version

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