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POLR2I RNA polymerase II subunit I [ Pan troglodytes (chimpanzee) ]

Gene ID: 746261, updated on 29-Mar-2024

Summary

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Official Symbol
POLR2Iprovided by VGNC
Official Full Name
RNA polymerase II subunit Iprovided by VGNC
Primary source
VGNC:VGNC:8296
Locus tag
CK820_G0030264
See related
Ensembl:ENSPTRG00000010885
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (39247013..39248227, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (39247040..39248519, complement)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene THAP domain containing 8 Neighboring gene WD repeat domain 62 Neighboring gene ovo like zinc finger 3 Neighboring gene tubulin folding cofactor B Neighboring gene calpain small subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
DNA directed RNA polymerase II polypeptide I
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
polymerase (RNA) II subunit I
XP_001162834.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39247013..39248227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001162834.7 → XP_001162834.1  DNA-directed RNA polymerase II subunit RPB9

    See identical proteins and their annotated locations for XP_001162834.1

    UniProtKB/TrEMBL
    A0A2J8QHU7, A0A6D2XDZ4, H2QG57
    Related
    ENSPTRP00000018648.2
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
Heading Accession and Version

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