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CTNND1 catenin delta 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 743685, updated on 3-Apr-2024

Summary

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Official Symbol
CTNND1provided by VGNC
Official Full Name
catenin delta 1provided by VGNC
Primary source
VGNC:VGNC:53059
Locus tag
CK820_G0030744
See related
Ensembl:ENSPTRG00000003668
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (60024386..60090058)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (59115442..59181102)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene thioredoxin related transmembrane protein 2 Neighboring gene selenoprotein H Neighboring gene BTB domain containing 18 Neighboring gene cytochrome c oxidase subunit NDUFA4 Neighboring gene olfactory receptor 5AP2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin delta-1
Names
catenin (cadherin-associated protein), delta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    60024386..60090058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054662280.2 → XP_054518255.2  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LCB4, A0A6D2XZ47, H2R3Z0, K7CW49

  2. XM_054662281.2 → XP_054518256.2  catenin delta-1 isoform X4

  3. XM_054662286.2 → XP_054518261.2  catenin delta-1 isoform X13

    UniProtKB/TrEMBL
    A0A2J8LCF2

  4. XM_054662287.2 → XP_054518262.1  catenin delta-1 isoform X15

  5. XM_016920913.4 → XP_016776402.3  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SD97, A0A2J8LCE9, A0A6D2X293

  6. XM_054662284.2 → XP_054518259.1  catenin delta-1 isoform X9

  7. XM_063784029.1 → XP_063640099.1  catenin delta-1 isoform X7

  8. XM_001143694.6 → XP_001143694.3  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LCB4, A0A6D2XZ47, H2R3Z0, K7CW49

  9. XM_063784027.1 → XP_063640097.1  catenin delta-1 isoform X4

  10. XM_054662283.2 → XP_054518258.2  catenin delta-1 isoform X8

  11. XM_024347147.3 → XP_024202915.3  catenin delta-1 isoform X13

    UniProtKB/TrEMBL
    A0A2J8LCF2

  12. XM_063784030.1 → XP_063640100.1  catenin delta-1 isoform X9

  13. XM_063784031.1 → XP_063640101.1  catenin delta-1 isoform X9

  14. XM_009440436.5 → XP_009438711.1  catenin delta-1 isoform X17

    See identical proteins and their annotated locations for XP_009438711.1

    UniProtKB/TrEMBL
    A0A2J8LCC6, A0A2J8LCD9
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  15. XM_063784043.1 → XP_063640113.1  catenin delta-1 isoform X19

    UniProtKB/TrEMBL
    A0A2J8LCF3

  16. XM_063784046.1 → XP_063640116.1  catenin delta-1 isoform X20

  17. XM_024347145.3 → XP_024202913.1  catenin delta-1 isoform X9

    UniProtKB/TrEMBL
    A0A2I3T2V0
    Conserved Domains (2) summary
    smart00185
    Location:416 → 457
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:344 → 369
    ARM; armadillo repeat [structural motif]

  18. XM_024347146.3 → XP_024202914.1  catenin delta-1 isoform X9

    UniProtKB/TrEMBL
    A0A2I3T2V0
    Conserved Domains (2) summary
    smart00185
    Location:416 → 457
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:344 → 369
    ARM; armadillo repeat [structural motif]

  19. XM_009440429.5 → XP_009438704.1  catenin delta-1 isoform X6

    See identical proteins and their annotated locations for XP_009438704.1

    UniProtKB/TrEMBL
    A0A2I3T2V0
    Conserved Domains (2) summary
    cd00020
    Location:339 → 457
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:344 → 369
    ARM; armadillo repeat [structural motif]

  20. XM_063784032.1 → XP_063640102.1  catenin delta-1 isoform X10

  21. XM_063784035.1 → XP_063640105.1  catenin delta-1 isoform X11

  22. XM_063784042.1 → XP_063640112.1  catenin delta-1 isoform X19

    UniProtKB/TrEMBL
    A0A2J8LCF3

  23. XM_063784045.1 → XP_063640115.1  catenin delta-1 isoform X20

  24. XM_024347151.3 → XP_024202919.1  catenin delta-1 isoform X15

    UniProtKB/TrEMBL
    A0A2I3S679
    Conserved Domains (2) summary
    smart00185
    Location:362 → 403
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:290 → 315
    ARM; armadillo repeat [structural motif]

  25. XM_063784039.1 → XP_063640109.1  catenin delta-1 isoform X14

  26. XM_063784033.1 → XP_063640103.1  catenin delta-1 isoform X10

  27. XM_001141713.7 → XP_001141713.3  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SD97, A0A2J8LCE9, A0A6D2X293

  28. XM_001143182.7 → XP_001143182.3  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LCB4, A0A6D2XZ47, H2R3Z0, K7CW49

  29. XM_063784028.1 → XP_063640098.1  catenin delta-1 isoform X4

  30. XM_009440433.5 → XP_009438708.3  catenin delta-1 isoform X7

  31. XM_063784040.1 → XP_063640110.1  catenin delta-1 isoform X15

  32. XM_063784044.1 → XP_063640114.1  catenin delta-1 isoform X19

    UniProtKB/TrEMBL
    A0A2J8LCF3

  33. XM_001143024.7 → XP_001143024.3  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LCB4, A0A6D2XZ47, H2R3Z0, K7CW49

  34. XM_063784034.1 → XP_063640104.1  catenin delta-1 isoform X10

  35. XM_001142797.7 → XP_001142797.1  catenin delta-1 isoform X17

    See identical proteins and their annotated locations for XP_001142797.1

    UniProtKB/TrEMBL
    A0A2J8LCC6, A0A2J8LCD9
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  36. XM_009440438.5 → XP_009438713.1  catenin delta-1 isoform X17

    See identical proteins and their annotated locations for XP_009438713.1

    UniProtKB/TrEMBL
    A0A2J8LCC6, A0A2J8LCD9
    Conserved Domains (2) summary
    smart00185
    Location:339 → 380
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:267 → 292
    ARM; armadillo repeat [structural motif]

  37. XM_063784026.1 → XP_063640096.1  catenin delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LCB4, A0A6D2XZ47, H2R3Z0, K7CW49

  38. XM_009440424.5 → XP_009438699.3  catenin delta-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SD97, A0A2J8LCE9, A0A6D2X293

  39. XM_009440426.5 → XP_009438701.3  catenin delta-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LCB3

  40. XM_009440428.5 → XP_009438703.3  catenin delta-1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3S7K9, A0A2J8LCE1, A0A6D2X7W3

  41. XM_054662282.2 → XP_054518257.2  catenin delta-1 isoform X4

  42. XM_063784036.1 → XP_063640106.1  catenin delta-1 isoform X12

    UniProtKB/TrEMBL
    A0A2J8LCD0

  43. XM_063784038.1 → XP_063640108.1  catenin delta-1 isoform X13

    UniProtKB/TrEMBL
    A0A2J8LCF2

  44. XM_063784041.1 → XP_063640111.1  catenin delta-1 isoform X16

  45. XM_016920919.4 → XP_016776408.3  catenin delta-1 isoform X21

  46. XM_063784037.1 → XP_063640107.1  catenin delta-1 isoform X13

    UniProtKB/TrEMBL
    A0A2J8LCF2

  47. XM_063784047.1 → XP_063640117.1  catenin delta-1 isoform X20

  48. XM_054662289.2 → XP_054518264.1  catenin delta-1 isoform X18

  49. XM_009440434.5 → XP_009438709.3  catenin delta-1 isoform X12

    UniProtKB/TrEMBL
    A0A2J8LCD0

  50. XM_016920917.4 → XP_016776406.3  catenin delta-1 isoform X12

    UniProtKB/TrEMBL
    A0A2J8LCD0
Nucleotide Protein
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