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VIPR1 vasoactive intestinal peptide receptor 1 [ Homo sapiens (human) ]

Gene ID: 7433, updated on 5-Mar-2024

Summary

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Official Symbol
VIPR1provided by HGNC
Official Full Name
vasoactive intestinal peptide receptor 1provided by HGNC
Primary source
HGNC:HGNC:12694
See related
Ensembl:ENSG00000114812 MIM:192321; AllianceGenome:HGNC:12694
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
II; HVR1; RDC1; V1RG; VIPR; VIRG; VAPC1; VPAC1; VPAC1R; VIP-R-1; VPCAP1R; PACAP-R2; PACAP-R-2
Summary
This gene encodes a receptor for vasoactive intestinal peptide, a small neuropeptide. Vasoactive intestinal peptide is involved in smooth muscle relaxation, exocrine and endocrine secretion, and water and ion flux in lung and intestinal epithelia. Its actions are effected through integral membrane receptors associated with a guanine nucleotide binding protein which activates adenylate cyclase. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
Expression
Broad expression in lung (RPKM 17.1), duodenum (RPKM 12.7) and 17 other tissues See more
Orthologs
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Genomic context

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See VIPR1 in Genome Data Viewer
Location:
3p22.1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (42489299..42537568)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (42507314..42555561)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (42530791..42579060)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:42411131-42411759 Neighboring gene NANOG hESC enhancer GRCh37_chr3:42426849-42427356 Neighboring gene lysozyme like 4 Neighboring gene uncharacterized LOC124909371 Neighboring gene ribosomal protein L35a pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19745 Neighboring gene uncharacterized LOC124909372 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:42542633-42543206 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14244 Neighboring gene Sharpr-MPRA regulatory region 5178 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:42566136-42566306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:42574871-42575372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:42581415-42581916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:42581917-42582416 Neighboring gene VIPR1 antisense RNA 1 Neighboring gene SEC22 homolog C, vesicle trafficking protein Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:42622926-42623752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19746 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14246 Neighboring gene SS18 like 2 Neighboring gene ZBTB47 and NKTR antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:42672544-42673392 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:42673393-42674241 Neighboring gene natural killer cell triggering receptor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19747 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. [VIPR1 promoter methylation promotes transcription factor AP-2α binding to inhibit VIPR1 expression and promote hepatocellular carcinoma cell growth in vitro]. Ning S, et al. Nan Fang Yi Ke Da Xue Xue Bao, 2022 Jul 20. PMID 35869757, Free PMC Article
  2. Activation of VIPR1 suppresses hepatocellular carcinoma progression by regulating arginine and pyrimidine metabolism. Fu Y, et al. Int J Biol Sci, 2022. PMID 35864952, Free PMC Article
  3. Cryo-EM structure of an activated VIP1 receptor-G protein complex revealed by a NanoBiT tethering strategy. Duan J, et al. Nat Commun, 2020 Aug 17. PMID 32807782, Free PMC Article
  4. Mechanism of VIPR1 gene regulating human lung adenocarcinoma H1299 cells. Zhao L, et al. Med Oncol, 2019 Sep 27. PMID 31560089
  5. Immune evasion by Salmonella: exploiting the VPAC1/VIP axis in human monocytes. Askar B, et al. Immunology, 2019 Nov. PMID 31408534, Free PMC Article

See all (110) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PAC1, VPAC1, and VPAC2 Receptor Expression in Rat and Human Trigeminal Ganglia: Characterization of PACAP-Responsive Receptor Antibodies.
    Title: PAC(1), VPAC(1), and VPAC(2) Receptor Expression in Rat and Human Trigeminal Ganglia: Characterization of PACAP-Responsive Receptor Antibodies.
  2. [VIPR1 promoter methylation promotes transcription factor AP-2alpha binding to inhibit VIPR1 expression and promote hepatocellular carcinoma cell growth in vitro].
    Title: [VIPR1 promoter methylation promotes transcription factor AP-2α binding to inhibit VIPR1 expression and promote hepatocellular carcinoma cell growth in vitro].
  3. Activation of VIPR1 suppresses hepatocellular carcinoma progression by regulating arginine and pyrimidine metabolism.
    Title: Activation of VIPR1 suppresses hepatocellular carcinoma progression by regulating arginine and pyrimidine metabolism.
  4. Activation of Th lymphocytes alters pattern expression and cellular location of VIP receptors in healthy donors and early arthritis patients.
    Title: Activation of Th lymphocytes alters pattern expression and cellular location of VIP receptors in healthy donors and early arthritis patients.
  5. Cryo-EM structure of an activated VIP1 receptor-G protein complex revealed by a NanoBiT tethering strategy.
    Title: Cryo-EM structure of an activated VIP1 receptor-G protein complex revealed by a NanoBiT tethering strategy.
  6. 3D structure prediction of VAPC1 and identification of dual natural inhibitors for VPAC1 and EGFR.
    Title: 3D structure prediction of VAPC1 and identification of dual natural inhibitors for VPAC1 and EGFR.
  7. follicle-associated epithelium-adjacent villus epithelium in ileum of Crohn's disease possessed more mucosal mast cells and mucosal mast cells expressing VPAC1 but not VPAC2.
    Title: Upregulation of intestinal mucosal mast cells expressing VPAC1 in close proximity to vasoactive intestinal polypeptide in inflammatory bowel disease and murine colitis.
  8. S. Typhimurium infection exploits host VPAC1/VIP to gain survival advantage in human monocytes.
    Title: Immune evasion by Salmonella: exploiting the VPAC1/VIP axis in human monocytes.
  9. Enhanced expression of VPAC1 in primary gastric cancer correlates with metastasis and poor prognosis.VPAC1 activation induces Ca2+ signaling to promote migration and invasion of gastric cancer cells.
    Title: VPAC1 couples with TRPV4 channel to promote calcium-dependent gastric cancer progression via a novel autocrine mechanism.
  10. Findings point out the tumor suppressor roles of VIPR1 in human LUAD pathogenesis.
    Title: Mechanism of VIPR1 gene regulating human lung adenocarcinoma H1299 cells.
Submit: New GeneRIF Correction See all GeneRIFs (65)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env HIV-1 gp120 has sequence similarity to the natural ligand for VPAC1 and it can activate this receptor directly PubMed
Tat tat HIV-1 Tat downregulates the expression of vasoactive intestinal peptide receptor 1 (VIPR1) in human primary T cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ41949

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled peptide receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables peptide hormone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables peptide hormone binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables vasoactive intestinal polypeptide receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables vasoactive intestinal polypeptide receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway TAS
Traceable Author Statement
more info
 PubMed 
involved_in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in adenylate cyclase-modulating G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of cell population proliferation TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane TAS
Traceable Author Statement
more info
  
part_of receptor complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
vasoactive intestinal polypeptide receptor 1
Names
PACAP type II receptor
VIP and PACAP receptor 1
VIP receptor, type I
VPAC1 receptor
pituitary adenylate cyclase activating polypeptide receptor, type II
type 1 vasoactive intestinal peptide receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030371.1 RefSeqGene

    Range
    18345..53270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001251882.2 → NP_001238811.1  vasoactive intestinal polypeptide receptor 1 isoform 2

    See identical proteins and their annotated locations for NP_001238811.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC092047, AK056819, AK298115, BU681817
    Consensus CDS
    CCDS58828.1
    Related
    ENSP00000394950.1, ENST00000433647.5
    Conserved Domains (2) summary
    smart00008
    Location:18 → 87
    HormR; Domain present in hormone receptors
    pfam00002
    Location:98 → 343
    7tm_2; 7 transmembrane receptor (Secretin family)

  2. NM_001251883.2 → NP_001238812.1  vasoactive intestinal polypeptide receptor 1 isoform 3

    See identical proteins and their annotated locations for NP_001238812.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon in the 5' coding region, uses a downstream start codon, and has multiple differences in the coding region, compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC092047, AK293548, BU681817
    Consensus CDS
    CCDS58829.1
    UniProtKB/Swiss-Prot
    P32241
    Related
    ENSP00000415371.2, ENST00000438259.6
    Conserved Domains (1) summary
    cl21561
    Location:55 → 174
    7tm_4; Olfactory receptor

  3. NM_001251884.2 → NP_001238813.1  vasoactive intestinal polypeptide receptor 1 isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) lacks an alternate exon in the 5' coding region and uses a downstream start codon, compared to variant 1. The resulting isoform (4) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC092047, AK294609, AK298115, BU681817
    Consensus CDS
    CCDS58827.1
    UniProtKB/Swiss-Prot
    P32241
    UniProtKB/TrEMBL
    B4DNY6
    Related
    ENSP00000445701.1, ENST00000543411.5
    Conserved Domains (2) summary
    smart00008
    Location:14 → 81
    HormR; Domain present in hormone receptors
    pfam00002
    Location:91 → 336
    7tm_2; 7 transmembrane receptor (Secretin family)

  4. NM_001251885.2 → NP_001238814.1  vasoactive intestinal polypeptide receptor 1 isoform 5

    See identical proteins and their annotated locations for NP_001238814.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks an alternate internal segment in the 5' coding region and uses a downstream start codon, compared to variant 1. The resulting isoform (5z) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC092047, AK298115, BU681817
    UniProtKB/TrEMBL
    B4DNY6
    Conserved Domains (2) summary
    smart00008
    Location:32 → 101
    HormR; Domain present in hormone receptors
    pfam00002
    Location:112 → 357
    7tm_2; 7 transmembrane receptor (Secretin family)

  5. NM_004624.4 → NP_004615.2  vasoactive intestinal polypeptide receptor 1 isoform 1 precursor

    See identical proteins and their annotated locations for NP_004615.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC092047, BU681817, DA200439, L13288, X75299
    Consensus CDS
    CCDS2698.1
    UniProtKB/Swiss-Prot
    A5JUT9, B3KPV1, B4DEB5, B4DGI4, F5H1F5, G3V0I1, P32241, Q15871, Q6P2M6
    Related
    ENSP00000327246.4, ENST00000325123.5
    Conserved Domains (2) summary
    smart00008
    Location:59 → 128
    HormR; Domain present in hormone receptors
    pfam00002
    Location:139 → 384
    7tm_2; 7 transmembrane receptor (Secretin family)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    42489299..42537568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005265437.3 → XP_005265494.1  vasoactive intestinal polypeptide receptor 1 isoform X1

    Conserved Domains (2) summary
    smart00008
    Location:59 → 128
    HormR; Domain present in hormone receptors
    pfam00002
    Location:138 → 383
    7tm_2; 7 transmembrane receptor (Secretin family)

  2. XM_005265439.3 → XP_005265496.1  vasoactive intestinal polypeptide receptor 1 isoform X2

    Conserved Domains (2) summary
    smart00008
    Location:14 → 81
    HormR; Domain present in hormone receptors
    pfam00002
    Location:92 → 337
    7tm_2; 7 transmembrane receptor (Secretin family)

  3. XM_011534080.3 → XP_011532382.1  vasoactive intestinal polypeptide receptor 1 isoform X3

    Conserved Domains (3) summary
    smart00008
    Location:59 → 128
    HormR; Domain present in hormone receptors
    cd14964
    Location:142 → 166
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:139 → 337
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  4. XM_047448850.1 → XP_047304806.1  vasoactive intestinal polypeptide receptor 1 isoform X4

  5. XM_047448851.1 → XP_047304807.1  vasoactive intestinal polypeptide receptor 1 isoform X5

RNA

  1. XR_007095725.1 RNA Sequence

    Related
    ENST00000436487.5

  2. XR_940500.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    42507314..42555561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054347745.1 → XP_054203720.1  vasoactive intestinal polypeptide receptor 1 isoform X1

  2. XM_054347746.1 → XP_054203721.1  vasoactive intestinal polypeptide receptor 1 isoform X2

  3. XM_054347747.1 → XP_054203722.1  vasoactive intestinal polypeptide receptor 1 isoform X3

  4. XM_054347748.1 → XP_054203723.1  vasoactive intestinal polypeptide receptor 1 isoform X4

  5. XM_054347749.1 → XP_054203724.1  vasoactive intestinal polypeptide receptor 1 isoform X5

RNA

  1. XR_008486791.1 RNA Sequence

  2. XR_008486792.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P32241.1 GenPept UniProtKB/Swiss-Prot:P32241

Gene LinkOut

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